FvH4_7g10340

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0009898
Physical Location & Seq
Forward (+)
9808587 .. 9815252
6666 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g10340.t3

Sequence Viewer

Length: 612 bp
ATGGCCCTGGCAATAGCTTTCCTCATACTCTTGGTGGCAGCTCCAGCTGCAGTTTTTGGAGCTGATCACATTGTTGGTGATGACCAGGGATGGAACTCAGGTGTAGATTATGAGACTTGGGCTTCCGGCAAAACCTTCACCGTCGGTGACACCCTTGTGTTCAACTTTCTCAGTAACCACGAAGTCGATGAGGTAAGCCTAGCAGACTACAACGGTTGCAGTTCAAGTAATACCATCAAAAACTATGACAGTAGCCCCGCGAAAATCACCCTCTCCAAAGCTGGTCCAAGCTACTACATATGCCCTACCCCAGGTCACTGTGCTAGTGGCATGAAGCTTTTGGTCAATGCTGTGGCCGCTGGCACCCCAAGTGCCACCCCGCCTACTACCCCCACCACGCCAGCACCACCCACAACCACGCCGGCACCACCCACCACCACGCCAGCGCCACCCACCACCACACCAGCACCACCCACTAACACCACTCCTGCCAGCAATGACTCGCCACCTCCACCACCACCACCGCCAAAGATTTCACCGGCGAGTAGTCTACACATGAGTTTGGTTGGGGTTCCACTTGTGTTGGGAACTTTGATTGCGTGTATGGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

204

Amino Acids

20.56

Weight (kDa)

4.82

Isoelectric Point (pI)

49.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 31 - 111 3.1e-26 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 362, 424
AccI GTMKAC 1 cut(s) 550
AccII CGCG 1 cut(s) 260
AciI CCGC 4 cut(s) 258, 357, 380, 524
AcoI YGGCCR 1 cut(s) 354
AfiI CCNNNNNNNGG 1 cut(s) 311
AgsI TTSAA 2 cut(s) 163, 225
AjnI CCWGG 3 cut(s) 6, 84, 310
AleI CACNNNNGTG 1 cut(s) 155
AluBI AGCT 7 cut(s) 17, 41, 47, 62, 281, 291, 337
AluI AGCT 7 cut(s) 17, 41, 47, 62, 281, 291, 337
Alw26I GTCTC 1 cut(s) 107
AoxI GGCC 2 cut(s) 3, 354
ApeKI GCWGC 2 cut(s) 38, 47
AspLEI GCGC 1 cut(s) 448
AspS9I GGNCC 2 cut(s) 4, 284
AsuHPI GGTGA 5 cut(s) 89, 130, 158, 259, 528
AvaII GGWCC 1 cut(s) 284
BanI GGYRCC 2 cut(s) 362, 424
BbvI GCAGC 2 cut(s) 34, 50
BccI CCATC 2 cut(s) 84, 242
BciT130I CCWGG 3 cut(s) 8, 86, 312
BclI TGATCA 1 cut(s) 64
BcoDI GTCTC 1 cut(s) 107
BfaI CTAG 3 cut(s) 200, 324, 610
BfmI CTRYAG 1 cut(s) 48
BfoI RGCGCY 1 cut(s) 449
BisI GCNGC 3 cut(s) 39, 48, 357
BlsI GCNGC 3 cut(s) 40, 49, 358
Bme1390I CCNGG 3 cut(s) 8, 86, 312
Bme18I GGWCC 1 cut(s) 284
BmgT120I GGNCC 2 cut(s) 4, 284
BmiI GGNNCC 3 cut(s) 364, 426, 573
BmrFI CCNGG 3 cut(s) 8, 86, 312
BpmI CTGGAG 1 cut(s) 27
BsaJI CCNNGG 3 cut(s) 6, 85, 310
Bsc4I CCNNNNNNNGG 1 cut(s) 311
Bse118I RCCGGY 2 cut(s) 421, 538
Bse3DI GCAATG 1 cut(s) 502
BseBI CCWGG 3 cut(s) 8, 86, 312
BseDI CCNNGG 3 cut(s) 6, 85, 310
BseGI GGATG 1 cut(s) 95
BseLI CCNNNNNNNGG 1 cut(s) 311
BseMI GCAATG 1 cut(s) 502
BseMII CTCAG 2 cut(s) 111, 184
BseXI GCAGC 2 cut(s) 34, 50
Bsh1236I CGCG 1 cut(s) 260
BshFI GGCC 2 cut(s) 5, 356
BshNI GGYRCC 2 cut(s) 362, 424
BsiSI CCGG 3 cut(s) 126, 422, 539
BslI CCNNNNNNNGG 1 cut(s) 311
BsmAI GTCTC 1 cut(s) 107
BsnI GGCC 2 cut(s) 5, 356
Bsp143I GATC 1 cut(s) 64
BspACI CCGC 4 cut(s) 258, 357, 380, 524
BspANI GGCC 2 cut(s) 5, 356
BspCNI CTCAG 2 cut(s) 110, 183
BspFNI CGCG 1 cut(s) 260
BspLI GGNNCC 3 cut(s) 364, 426, 573
BspMAI CTGCAG 1 cut(s) 52
BspT107I GGYRCC 2 cut(s) 362, 424
BsrDI GCAATG 1 cut(s) 502
BsrFI RCCGGY 2 cut(s) 421, 538
BssAI RCCGGY 2 cut(s) 421, 538
BssECI CCNNGG 3 cut(s) 6, 85, 310
BssMI GATC 1 cut(s) 64
Bst2UI CCWGG 3 cut(s) 8, 86, 312
Bst4CI ACNGT 4 cut(s) 142, 215, 251, 320
BstC8I GCNNGC 5 cut(s) 361, 402, 423, 444, 493
BstDEI CTNAG 2 cut(s) 97, 170
BstENI CCTNNNNNAGG 1 cut(s) 309
BstF5I GGATG 1 cut(s) 95
BstFNI CGCG 1 cut(s) 260
BstH2I RGCGCY 1 cut(s) 449
BstHHI GCGC 1 cut(s) 448
BstKTI GATC 1 cut(s) 67
BstMAI GTCTC 1 cut(s) 107
BstMBI GATC 1 cut(s) 64
BstMWI GCNNNNNNNGC 3 cut(s) 44, 47, 356
BstNI CCWGG 3 cut(s) 8, 86, 312
BstSCI CCNGG 3 cut(s) 6, 84, 310
BstSFI CTRYAG 1 cut(s) 48
BstUI CGCG 1 cut(s) 260
BstV1I GCAGC 2 cut(s) 34, 50
BsuRI GGCC 2 cut(s) 5, 356
BtsCI GGATG 1 cut(s) 95
BtsIMutI CAGTG 1 cut(s) 316
Cac8I GCNNGC 5 cut(s) 361, 402, 423, 444, 493
CfoI GCGC 1 cut(s) 448
Cfr10I RCCGGY 2 cut(s) 421, 538
Cfr13I GGNCC 2 cut(s) 4, 284
CspCI CAANNNNNGTGG 2 cut(s) 564, 599
CviAII CATG 2 cut(s) 331, 556
DdeI CTNAG 2 cut(s) 97, 170
DpnI GATC 1 cut(s) 66
DpnII GATC 1 cut(s) 64
EaeI YGGCCR 1 cut(s) 354
Eco47I GGWCC 1 cut(s) 284
EcoNI CCTNNNNNAGG 1 cut(s) 309
EcoRII CCWGG 3 cut(s) 6, 84, 310
FaeI CATG 2 cut(s) 334, 559
FaiI YATR 8 cut(s) 26, 111, 246, 299, 301, 332, 557, 605
FatI CATG 2 cut(s) 330, 555
FauI CCCGC 2 cut(s) 265, 387
FauNDI CATATG 1 cut(s) 299
FbaI TGATCA 1 cut(s) 64
FblI GTMKAC 1 cut(s) 550
Fnu4HI GCNGC 3 cut(s) 39, 48, 357
FokI GGATG 1 cut(s) 102
Fsp4HI GCNGC 3 cut(s) 39, 48, 357
FspBI CTAG 3 cut(s) 200, 324, 610
GlaI GCGC 1 cut(s) 447
GluI GCNGC 3 cut(s) 39, 48, 357
GsuI CTGGAG 1 cut(s) 27
HaeII RGCGCY 1 cut(s) 449
HaeIII GGCC 2 cut(s) 5, 356
HapII CCGG 3 cut(s) 126, 422, 539
HhaI GCGC 1 cut(s) 448
Hin1II CATG 2 cut(s) 334, 559
Hin6I GCGC 1 cut(s) 446
HinP1I GCGC 1 cut(s) 446
HindIII AAGCTT 1 cut(s) 335
HinfI GANTC 1 cut(s) 500
HpaII CCGG 3 cut(s) 126, 422, 539
HphI GGTGA 5 cut(s) 89, 130, 158, 259, 528
Hpy166II GTNNAC 1 cut(s) 551
Hpy8I GTNNAC 1 cut(s) 551
Hpy99I CGWCG 1 cut(s) 146
HpyAV CCTTC 1 cut(s) 145
HpyCH4III ACNGT 4 cut(s) 142, 215, 251, 320
HpyCH4V TGCA 2 cut(s) 50, 219
HpyF10VI GCNNNNNNNGC 3 cut(s) 44, 47, 356
HpyF3I CTNAG 2 cut(s) 97, 170
Hsp92II CATG 2 cut(s) 334, 559
HspAI GCGC 1 cut(s) 446
KroI GCCGGC 1 cut(s) 421
KroNI GCCGGC 1 cut(s) 423
Ksp22I TGATCA 1 cut(s) 64
Kzo9I GATC 1 cut(s) 64
LmnI GCTCC 2 cut(s) 46, 59
Lsp1109I GCAGC 2 cut(s) 34, 50
MaeI CTAG 3 cut(s) 200, 324, 610
MaeIII GTNAC 3 cut(s) 146, 173, 314
MalI GATC 1 cut(s) 66
MboI GATC 1 cut(s) 64
MlyI GAGTC 1 cut(s) 494
MnlI CCTC 4 cut(s) 32, 184, 281, 519
MroNI GCCGGC 1 cut(s) 421
MslI CAYNNNNRTG 1 cut(s) 155
MspA1I CMGCKG 2 cut(s) 47, 359
MspI CCGG 3 cut(s) 126, 422, 539
MspR9I CCNGG 3 cut(s) 8, 86, 312
MvaI CCWGG 3 cut(s) 8, 86, 312
MvnI CGCG 1 cut(s) 260
MwoI GCNNNNNNNGC 3 cut(s) 44, 47, 356
NaeI GCCGGC 1 cut(s) 423
NdeI CATATG 1 cut(s) 299
NdeII GATC 1 cut(s) 64
NgoMIV GCCGGC 1 cut(s) 421
NlaIII CATG 2 cut(s) 334, 559
NlaIV GGNNCC 3 cut(s) 364, 426, 573
NmuCI GTSAC 2 cut(s) 146, 314
OliI CACNNNNGTG 1 cut(s) 155
PdiI GCCGGC 1 cut(s) 423
PkrI GCNGC 3 cut(s) 40, 49, 358
PleI GAGTC 1 cut(s) 494
PpsI GAGTC 1 cut(s) 494
Psp6I CCWGG 3 cut(s) 6, 84, 310
PspGI CCWGG 3 cut(s) 6, 84, 310
PspN4I GGNNCC 3 cut(s) 364, 426, 573
PspPI GGNCC 2 cut(s) 4, 284
PstI CTGCAG 1 cut(s) 52
PvuII CAGCTG 1 cut(s) 47
RseI CAYNNNNRTG 1 cut(s) 155
SatI GCNGC 3 cut(s) 39, 48, 357
Sau3AI GATC 1 cut(s) 64
Sau96I GGNCC 2 cut(s) 4, 284
SchI GAGTC 1 cut(s) 494
ScrFI CCNGG 3 cut(s) 8, 86, 312
SfcI CTRYAG 1 cut(s) 48
SgrAI CRCCGGYG 1 cut(s) 538
SinI GGWCC 1 cut(s) 284
SmiMI CAYNNNNRTG 1 cut(s) 155
SsiI CCGC 4 cut(s) 258, 357, 380, 524
SspMI CTAG 3 cut(s) 200, 324, 610
StyD4I CCNGG 3 cut(s) 6, 84, 310
TaaI ACNGT 4 cut(s) 142, 215, 251, 320
TaqI TCGA 1 cut(s) 186
TauI GCSGC 1 cut(s) 359
TscAI CASTG 1 cut(s) 323
TseFI GTSAC 2 cut(s) 146, 314
TseI GCWGC 2 cut(s) 38, 47
Tsp45I GTSAC 2 cut(s) 146, 314
TspDTI ATGAA 1 cut(s) 347
TspRI CASTG 1 cut(s) 323
VpaK11BI GGWCC 1 cut(s) 284
XagI CCTNNNNNAGG 1 cut(s) 309
XmiI GTMKAC 1 cut(s) 550
XspI CTAG 3 cut(s) 200, 324, 610
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.