AT3G60280

copper ion binding electron carrier

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0009898
Physical Location & Seq
Reverse (-)
22279485 .. 22280691
1207 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G60280.1

Sequence Viewer

Length: 669 bp
ATGGGATCAACCGTGGCCGCCGCTCTCCTCCTCTTCCTAGCGGCAGTCCCTGCCGTCTTTGCCGCAACTTTCAAGGTCGGCGATATTTCTGGCTGGACCAGTAATCTTGATTACACGGTTTGGCTCACTGGAAAGACTTTCAGAGTCGGTGACACTCTAGAGTTCGTATATGGTCTTTCACACTCGGTGTCCGTGGTGGATAAAGCTGGCTACGATAACTGCGACAGTAGCGGAGCCACACAGAACTTTGCCGATGGAGACACTAAGATCGATCTTACCACAGTTGGAACAATGCACTTCCTTTGCCCTACTTTTGGTCACTGCAAGAACGGCATGAAACTCGCCGTTCCTGTCCTCGCCGCCGCTCCATCTCCTTCGACTCCTTCTTCGCCTCCCTCCACTCCTTCGACTCCTTCTTCCCCGCCCTCCACTCCGTCTACCCCTTCTTCGCCCCCCTCCCCTCCTTCGCCTCCTTCTCCATCGCTCCCCCCTAGCTCTCTGCCTCCATCTGCATCTCCGCCGACCAATGGCACGCCGGATTCAGAGACATTGACGCCTCCGCCAGCTCCATTGCCGCCTTCGCTGTCTCCAAACGCGGCATCTAAGGGAGTCATGAGCTATGGAATAATTGGAGTCACGATGATATTGATGTACGCTGTTATGACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

222

Amino Acids

22.52

Weight (kDa)

5.05

Isoelectric Point (pI)

64.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 32 - 112 4.1e-27 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 23, 365
AccI GTMKAC 1 cut(s) 437
AccII CGCG 1 cut(s) 596
AclWI GGATC 1 cut(s) 13
AcoI YGGCCR 1 cut(s) 15
AcyI GRCGYC 1 cut(s) 554
AdeI CACNNNGTG 1 cut(s) 187
AfaI GTAC 1 cut(s) 653
AfiI CCNNNNNNNGG 2 cut(s) 314, 527
AgsI TTSAA 1 cut(s) 73
AluBI AGCT 4 cut(s) 206, 495, 566, 618
AluI AGCT 4 cut(s) 206, 495, 566, 618
Alw26I GTCTC 3 cut(s) 252, 539, 591
AlwI GGATC 1 cut(s) 13
AlwNI CAGNNNCTG 1 cut(s) 50
AoxI GGCC 1 cut(s) 15
ArsI GACNNNNNNTTYG 2 cut(s) 370, 402
AspS9I GGNCC 1 cut(s) 96
AsuHPI GGTGA 1 cut(s) 161
AvaII GGWCC 1 cut(s) 96
BccI CCATC 4 cut(s) 248, 376, 487, 514
BceAI ACGGC 3 cut(s) 38, 329, 346
BcgI CGANNNNNNTGC 2 cut(s) 322, 356
BcoDI GTCTC 3 cut(s) 252, 539, 591
BfaI CTAG 3 cut(s) 38, 158, 492
BisI GCNGC 8 cut(s) 18, 21, 42, 63, 360, 363, 575, 597
BlsI GCNGC 8 cut(s) 19, 22, 43, 64, 361, 364, 576, 598
Bme18I GGWCC 1 cut(s) 96
BmgT120I GGNCC 1 cut(s) 96
BmiI GGNNCC 1 cut(s) 235
BmsI GCATC 2 cut(s) 521, 608
Bsa29I ATCGAT 1 cut(s) 270
BsaHI GRCGYC 1 cut(s) 554
BsaJI CCNNGG 2 cut(s) 12, 192
Bsc4I CCNNNNNNNGG 2 cut(s) 314, 527
Bse1I ACTGG 2 cut(s) 99, 133
Bse3DI GCAATG 1 cut(s) 569
BseCI ATCGAT 1 cut(s) 270
BseDI CCNNGG 2 cut(s) 12, 192
BseLI CCNNNNNNNGG 2 cut(s) 314, 527
BseMI GCAATG 1 cut(s) 569
BseNI ACTGG 2 cut(s) 99, 133
BseRI GAGGAG 2 cut(s) 17, 20
Bsh1236I CGCG 1 cut(s) 596
BshFI GGCC 1 cut(s) 17
BshVI ATCGAT 1 cut(s) 270
BsiSI CCGG 1 cut(s) 536
BslFI GGGAC 1 cut(s) 32
BslI CCNNNNNNNGG 2 cut(s) 314, 527
BsmAI GTCTC 3 cut(s) 252, 539, 591
BsmFI GGGAC 1 cut(s) 32
BsnI GGCC 1 cut(s) 17
Bsp143I GATC 3 cut(s) 5, 267, 271
BspANI GGCC 1 cut(s) 17
BspDI ATCGAT 1 cut(s) 270
BspFNI CGCG 1 cut(s) 596
BspHI TCATGA 1 cut(s) 612
BspLI GGNNCC 1 cut(s) 235
BspPI GGATC 1 cut(s) 13
BsrBI CCGCTC 2 cut(s) 23, 365
BsrDI GCAATG 1 cut(s) 569
BsrI ACTGG 2 cut(s) 99, 133
BssECI CCNNGG 2 cut(s) 12, 192
BssMI GATC 3 cut(s) 5, 267, 271
BssNI GRCGYC 1 cut(s) 554
Bst4CI ACNGT 4 cut(s) 13, 118, 227, 283
Bst6I CTCTTC 1 cut(s) 38
BstACI GRCGYC 1 cut(s) 554
BstAPI GCANNNNNTGC 1 cut(s) 50
BstC8I GCNNGC 3 cut(s) 208, 533, 564
BstDEI CTNAG 2 cut(s) 264, 603
BstDSI CCRYGG 2 cut(s) 12, 192
BstFNI CGCG 1 cut(s) 596
BstKTI GATC 3 cut(s) 8, 270, 274
BstMAI GTCTC 3 cut(s) 252, 539, 591
BstMBI GATC 3 cut(s) 5, 267, 271
BstMWI GCNNNNNNNGC 5 cut(s) 50, 59, 228, 330, 580
BstUI CGCG 1 cut(s) 596
Bsu15I ATCGAT 1 cut(s) 270
BsuRI GGCC 1 cut(s) 17
BsuTUI ATCGAT 1 cut(s) 270
BtgI CCRYGG 2 cut(s) 12, 192
BtgZI GCGATG 1 cut(s) 465
BtsI GCAGTG 1 cut(s) 319
BtsIMutI CAGTG 2 cut(s) 126, 319
Cac8I GCNNGC 3 cut(s) 208, 533, 564
CaiI CAGNNNCTG 1 cut(s) 50
CciI TCATGA 1 cut(s) 612
Cfr13I GGNCC 1 cut(s) 96
ClaI ATCGAT 1 cut(s) 270
CseI GACGC 1 cut(s) 562
Csp6I GTAC 1 cut(s) 652
CviAII CATG 2 cut(s) 334, 613
CviJI RGCY 9 cut(s) 17, 93, 124, 206, 210, 236, 495, 566, 618
CviKI_1 RGCY 9 cut(s) 17, 93, 124, 206, 210, 236, 495, 566, 618
CviQI GTAC 1 cut(s) 652
DdeI CTNAG 2 cut(s) 264, 603
DpnI GATC 3 cut(s) 7, 269, 273
DpnII GATC 3 cut(s) 5, 267, 271
DraIII CACNNNGTG 1 cut(s) 187
EaeI YGGCCR 1 cut(s) 15
Eam1104I CTCTTC 1 cut(s) 38
EarI CTCTTC 1 cut(s) 38
EciI GGCGGA 2 cut(s) 507, 549
Eco47I GGWCC 1 cut(s) 96
FaeI CATG 2 cut(s) 337, 616
FaiI YATR 6 cut(s) 169, 171, 335, 614, 621, 662
FaqI GGGAC 1 cut(s) 32
FatI CATG 2 cut(s) 333, 612
FauI CCCGC 1 cut(s) 429
FblI GTMKAC 1 cut(s) 437
Fnu4HI GCNGC 8 cut(s) 18, 21, 42, 63, 360, 363, 575, 597
Fsp4HI GCNGC 8 cut(s) 18, 21, 42, 63, 360, 363, 575, 597
FspBI CTAG 3 cut(s) 38, 158, 492
GluI GCNGC 8 cut(s) 18, 21, 42, 63, 360, 363, 575, 597
HaeIII GGCC 1 cut(s) 17
HapII CCGG 1 cut(s) 536
HgaI GACGC 1 cut(s) 562
Hin1I GRCGYC 1 cut(s) 554
Hin1II CATG 2 cut(s) 337, 616
HinfI GANTC 6 cut(s) 144, 379, 409, 539, 609, 633
HpaII CCGG 1 cut(s) 536
HphI GGTGA 1 cut(s) 161
Hpy166II GTNNAC 1 cut(s) 438
Hpy188I TCNGA 2 cut(s) 143, 544
Hpy188III TCNNGA 4 cut(s) 107, 158, 613, 637
Hpy8I GTNNAC 1 cut(s) 438
HpyAV CCTTC 8 cut(s) 384, 393, 414, 423, 453, 474, 483, 588
HpyCH4III ACNGT 4 cut(s) 13, 118, 227, 283
HpyCH4V TGCA 3 cut(s) 295, 324, 512
HpyF10VI GCNNNNNNNGC 5 cut(s) 50, 59, 228, 330, 580
HpyF3I CTNAG 2 cut(s) 264, 603
Hsp92I GRCGYC 1 cut(s) 554
Hsp92II CATG 2 cut(s) 337, 616
Kzo9I GATC 3 cut(s) 5, 267, 271
LmnI GCTCC 4 cut(s) 233, 370, 489, 571
LpnPI CCDG 9 cut(s) 63, 75, 79, 112, 114, 192, 363, 549, 576
LweI GCATC 2 cut(s) 521, 608
MaeI CTAG 3 cut(s) 38, 158, 492
MaeIII GTNAC 3 cut(s) 149, 317, 634
MalI GATC 3 cut(s) 7, 269, 273
MbiI CCGCTC 2 cut(s) 23, 365
MboI GATC 3 cut(s) 5, 267, 271
MboII GAAGA 4 cut(s) 25, 378, 408, 438
MluCI AATT 1 cut(s) 627
MlyI GAGTC 5 cut(s) 153, 373, 403, 618, 642
MmeI TCCRAC 1 cut(s) 265
MspI CCGG 1 cut(s) 536
MvnI CGCG 1 cut(s) 596
MwoI GCNNNNNNNGC 5 cut(s) 50, 59, 228, 330, 580
NdeII GATC 3 cut(s) 5, 267, 271
NlaIII CATG 2 cut(s) 337, 616
NlaIV GGNNCC 1 cut(s) 235
NmuCI GTSAC 3 cut(s) 149, 317, 634
PagI TCATGA 1 cut(s) 612
PcsI WCGNNNNNNNCGW 1 cut(s) 219
PfeI GAWTC 1 cut(s) 539
PkrI GCNGC 8 cut(s) 19, 22, 43, 64, 361, 364, 576, 598
PleI GAGTC 5 cut(s) 152, 373, 403, 617, 641
PpsI GAGTC 5 cut(s) 152, 373, 403, 617, 641
PspN4I GGNNCC 1 cut(s) 235
PspPI GGNCC 1 cut(s) 96
PstNI CAGNNNCTG 1 cut(s) 50
RsaI GTAC 1 cut(s) 653
RsaNI GTAC 1 cut(s) 652
SatI GCNGC 8 cut(s) 18, 21, 42, 63, 360, 363, 575, 597
Sau3AI GATC 3 cut(s) 5, 267, 271
Sau96I GGNCC 1 cut(s) 96
SchI GAGTC 5 cut(s) 153, 373, 403, 618, 642
SetI ASST 6 cut(s) 78, 208, 497, 568, 620, 668
SfaNI GCATC 2 cut(s) 521, 608
SinI GGWCC 1 cut(s) 96
Sse9I AATT 1 cut(s) 627
SspMI CTAG 3 cut(s) 38, 158, 492
TaaI ACNGT 4 cut(s) 13, 118, 227, 283
TaqI TCGA 3 cut(s) 270, 377, 407
TasI AATT 1 cut(s) 627
TauI GCSGC 8 cut(s) 20, 23, 44, 65, 362, 365, 577, 599
TfiI GAWTC 1 cut(s) 539
TscAI CASTG 2 cut(s) 133, 326
TseFI GTSAC 3 cut(s) 149, 317, 634
Tsp45I GTSAC 3 cut(s) 149, 317, 634
TspDTI ATGAA 1 cut(s) 350
TspGWI ACGGA 2 cut(s) 181, 423
TspRI CASTG 2 cut(s) 133, 326
VpaK11BI GGWCC 1 cut(s) 96
XbaI TCTAGA 1 cut(s) 157
XmiI GTMKAC 1 cut(s) 437
XspI CTAG 3 cut(s) 38, 158, 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.