pycom07g09410

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0009898
Physical Location & Seq
Forward (+)
8699262 .. 8699912
651 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g09410.1

Sequence Viewer

Length: 504 bp
ATGGCCAATGCAACAGCTCTGCTGATTCTCCTGCTGGCAGCCCCAACAGTGTATGGAGTGCAGCACATTGTCGGTGACGCCTCTGGTTGGAGCACATCGGTAGATTATGACTCTTGGGCTGCAATGTTCAACTATGGTAGTTCCCACAAAGTGGATATTGTAAACCAAGCTGACTACGCCAGTTGCAGTTCAAGCAATTCCCTAAAAACCTATGATGATGGCGCCACGACAATCACCCTCTCCCAACCTGGTCCAGCCTACTTCATATGCCCTTCTGCAGGCCACTGTGCTAATGGCATGAAGCTTTCAGTCAATGTTGTAGCAGCTGGCACCCCAAGTGGTACTCCGTCAACCACCCCCCCATCTACACCCACCACTCCTGGAAGCAATCCTTCACCACCGCCACCGCCACCACCTCCTGAGGGAGCAGCAAATTCTCTTGACATGAATATGCTTGGGTTTCCACTTGTGTTGTTGGCAACCTTGGTTGCATTCATGGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

168

Amino Acids

16.97

Weight (kDa)

4.41

Isoelectric Point (pI)

41.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 41 - 100 1.3e-15 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 221, 329
AccB7I CCANNNNNTGG 1 cut(s) 151
AciI CCGC 2 cut(s) 401, 407
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 433
AcyI GRCGYC 2 cut(s) 78, 222
AdeI CACNNNGTG 1 cut(s) 151
AfaI GTAC 1 cut(s) 343
AfiI CCNNNNNNNGG 4 cut(s) 87, 151, 278, 422
AgsI TTSAA 2 cut(s) 130, 192
AjnI CCWGG 2 cut(s) 247, 379
AluBI AGCT 4 cut(s) 17, 170, 304, 326
AluI AGCT 4 cut(s) 17, 170, 304, 326
Alw21I GWGCWC 1 cut(s) 95
AoxI GGCC 2 cut(s) 3, 280
ApeKI GCWGC 5 cut(s) 38, 61, 119, 323, 428
ApoI RAATTY 1 cut(s) 433
AspLEI GCGC 1 cut(s) 224
AspS9I GGNCC 1 cut(s) 251
AsuHPI GGTGA 3 cut(s) 86, 226, 387
AvaII GGWCC 1 cut(s) 251
AxyI CCTNAGG 1 cut(s) 420
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 2 cut(s) 221, 329
Bbv12I GWGCWC 1 cut(s) 95
BbvI GCAGC 5 cut(s) 50, 73, 106, 335, 440
BccI CCATC 2 cut(s) 212, 370
BciT130I CCWGG 2 cut(s) 249, 381
BfmI CTRYAG 1 cut(s) 276
BfoI RGCGCY 1 cut(s) 225
BisI GCNGC 5 cut(s) 39, 62, 120, 324, 429
BlsI GCNGC 5 cut(s) 40, 63, 121, 325, 430
Bme1390I CCNGG 2 cut(s) 249, 381
Bme18I GGWCC 1 cut(s) 251
BmgT120I GGNCC 1 cut(s) 251
BmiI GGNNCC 2 cut(s) 223, 331
BmrFI CCNGG 2 cut(s) 249, 381
BsaHI GRCGYC 2 cut(s) 78, 222
BsaJI CCNNGG 1 cut(s) 483
Bsc4I CCNNNNNNNGG 4 cut(s) 87, 151, 278, 422
Bse1I ACTGG 1 cut(s) 180
Bse21I CCTNAGG 1 cut(s) 420
Bse3DI GCAATG 1 cut(s) 129
BseBI CCWGG 2 cut(s) 249, 381
BseDI CCNNGG 1 cut(s) 483
BseLI CCNNNNNNNGG 4 cut(s) 87, 151, 278, 422
BseMI GCAATG 1 cut(s) 129
BseMII CTCAG 1 cut(s) 411
BseNI ACTGG 1 cut(s) 180
BseXI GCAGC 5 cut(s) 50, 73, 106, 335, 440
BsgI GTGCAG 1 cut(s) 80
BshFI GGCC 2 cut(s) 5, 282
BshNI GGYRCC 2 cut(s) 221, 329
BsiHKAI GWGCWC 1 cut(s) 95
BslI CCNNNNNNNGG 4 cut(s) 87, 151, 278, 422
BsmI GAATGC 1 cut(s) 491
BsnI GGCC 2 cut(s) 5, 282
Bsp1286I GDGCHC 1 cut(s) 95
BspACI CCGC 2 cut(s) 401, 407
BspANI GGCC 2 cut(s) 5, 282
BspCNI CTCAG 1 cut(s) 412
BspLI GGNNCC 2 cut(s) 223, 331
BspMAI CTGCAG 1 cut(s) 280
BspT107I GGYRCC 2 cut(s) 221, 329
BsrDI GCAATG 1 cut(s) 129
BsrI ACTGG 1 cut(s) 180
BssECI CCNNGG 1 cut(s) 483
BssNI GRCGYC 2 cut(s) 78, 222
BssT1I CCWWGG 1 cut(s) 483
Bst2UI CCWGG 2 cut(s) 249, 381
Bst4CI ACNGT 2 cut(s) 49, 287
BstACI GRCGYC 2 cut(s) 78, 222
BstC8I GCNNGC 3 cut(s) 36, 280, 328
BstDEI CTNAG 1 cut(s) 420
BstENI CCTNNNNNAGG 1 cut(s) 276
BstH2I RGCGCY 1 cut(s) 225
BstHHI GCGC 1 cut(s) 224
BstMWI GCNNNNNNNGC 2 cut(s) 176, 192
BstNI CCWGG 2 cut(s) 249, 381
BstSCI CCNGG 2 cut(s) 247, 379
BstSFI CTRYAG 1 cut(s) 276
BstV1I GCAGC 5 cut(s) 50, 73, 106, 335, 440
Bsu36I CCTNAGG 1 cut(s) 420
BsuRI GGCC 2 cut(s) 5, 282
BtsIMutI CAGTG 2 cut(s) 54, 283
Cac8I GCNNGC 3 cut(s) 36, 280, 328
CfoI GCGC 1 cut(s) 224
Cfr13I GGNCC 1 cut(s) 251
CseI GACGC 1 cut(s) 86
CsiI ACCWGGT 1 cut(s) 247
Csp6I GTAC 1 cut(s) 342
CspCI CAANNNNNGTGG 2 cut(s) 453, 488
CviAII CATG 3 cut(s) 298, 445, 496
CviJI RGCY 9 cut(s) 5, 17, 41, 119, 170, 257, 282, 304, 326
CviKI_1 RGCY 9 cut(s) 5, 17, 41, 119, 170, 257, 282, 304, 326
CviQI GTAC 1 cut(s) 342
DdeI CTNAG 1 cut(s) 420
DinI GGCGCC 1 cut(s) 223
DraIII CACNNNGTG 1 cut(s) 151
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 483
Eco47I GGWCC 1 cut(s) 251
Eco81I CCTNAGG 1 cut(s) 420
EcoNI CCTNNNNNAGG 1 cut(s) 276
EcoRII CCWGG 2 cut(s) 247, 379
EcoT14I CCWWGG 1 cut(s) 483
EgeI GGCGCC 1 cut(s) 223
EheI GGCGCC 1 cut(s) 223
ErhI CCWWGG 1 cut(s) 483
FaeI CATG 3 cut(s) 301, 448, 499
FalI AAGNNNNNCTT 2 cut(s) 376, 408
FatI CATG 3 cut(s) 297, 444, 495
FauNDI CATATG 1 cut(s) 266
Fnu4HI GCNGC 5 cut(s) 39, 62, 120, 324, 429
Fsp4HI GCNGC 5 cut(s) 39, 62, 120, 324, 429
GlaI GCGC 1 cut(s) 223
GluI GCNGC 5 cut(s) 39, 62, 120, 324, 429
HaeII RGCGCY 1 cut(s) 225
HaeIII GGCC 2 cut(s) 5, 282
HgaI GACGC 1 cut(s) 86
HhaI GCGC 1 cut(s) 224
Hin1I GRCGYC 2 cut(s) 78, 222
Hin1II CATG 3 cut(s) 301, 448, 499
Hin6I GCGC 1 cut(s) 222
HinP1I GCGC 1 cut(s) 222
HincII GTYRAC 1 cut(s) 351
HindII GTYRAC 1 cut(s) 351
HindIII AAGCTT 1 cut(s) 302
HinfI GANTC 2 cut(s) 25, 110
HphI GGTGA 3 cut(s) 86, 226, 387
Hpy166II GTNNAC 2 cut(s) 163, 351
Hpy188III TCNNGA 2 cut(s) 419, 440
Hpy8I GTNNAC 2 cut(s) 163, 351
HpyAV CCTTC 2 cut(s) 282, 402
HpyCH4III ACNGT 2 cut(s) 49, 287
HpyCH4V TGCA 6 cut(s) 11, 61, 122, 186, 278, 491
HpyF10VI GCNNNNNNNGC 2 cut(s) 176, 192
HpyF3I CTNAG 1 cut(s) 420
Hsp92I GRCGYC 2 cut(s) 78, 222
Hsp92II CATG 3 cut(s) 301, 448, 499
HspAI GCGC 1 cut(s) 222
KasI GGCGCC 1 cut(s) 221
LmnI GCTCC 2 cut(s) 90, 425
Lsp1109I GCAGC 5 cut(s) 50, 73, 106, 335, 440
MabI ACCWGGT 1 cut(s) 247
MaeIII GTNAC 1 cut(s) 74
MhlI GDGCHC 1 cut(s) 95
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 196, 433
MluNI TGGCCA 1 cut(s) 5
Mly113I GGCGCC 1 cut(s) 222
MlyI GAGTC 1 cut(s) 104
MmeI TCCRAC 1 cut(s) 68
MnlI CCTC 4 cut(s) 91, 248, 415, 426
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MslI CAYNNNNRTG 1 cut(s) 449
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 326
MspR9I CCNGG 2 cut(s) 249, 381
Mva1269I GAATGC 1 cut(s) 491
MvaI CCWGG 2 cut(s) 249, 381
MwoI GCNNNNNNNGC 2 cut(s) 176, 192
NarI GGCGCC 1 cut(s) 222
NdeI CATATG 1 cut(s) 266
NlaIII CATG 3 cut(s) 301, 448, 499
NlaIV GGNNCC 2 cut(s) 223, 331
NmuCI GTSAC 1 cut(s) 74
PctI GAATGC 1 cut(s) 491
PfeI GAWTC 1 cut(s) 25
PflMI CCANNNNNTGG 1 cut(s) 151
PfoI TCCNGGA 1 cut(s) 379
PkrI GCNGC 5 cut(s) 40, 63, 121, 325, 430
PleI GAGTC 1 cut(s) 104
PluTI GGCGCC 1 cut(s) 225
PpsI GAGTC 1 cut(s) 104
Psp6I CCWGG 2 cut(s) 247, 379
PspGI CCWGG 2 cut(s) 247, 379
PspN4I GGNNCC 2 cut(s) 223, 331
PspPI GGNCC 1 cut(s) 251
PstI CTGCAG 1 cut(s) 280
PvuII CAGCTG 1 cut(s) 326
RsaI GTAC 1 cut(s) 343
RsaNI GTAC 1 cut(s) 342
RseI CAYNNNNRTG 1 cut(s) 449
SatI GCNGC 5 cut(s) 39, 62, 120, 324, 429
Sau96I GGNCC 1 cut(s) 251
SchI GAGTC 1 cut(s) 104
ScrFI CCNGG 2 cut(s) 249, 381
SduI GDGCHC 1 cut(s) 95
SetI ASST 8 cut(s) 19, 172, 212, 250, 306, 328, 418, 485
SexAI ACCWGGT 1 cut(s) 247
SfcI CTRYAG 1 cut(s) 276
SfoI GGCGCC 1 cut(s) 223
SinI GGWCC 1 cut(s) 251
SmiMI CAYNNNNRTG 1 cut(s) 449
Sse9I AATT 2 cut(s) 196, 433
SsiI CCGC 2 cut(s) 401, 407
SspDI GGCGCC 1 cut(s) 221
StyD4I CCNGG 2 cut(s) 247, 379
StyI CCWWGG 1 cut(s) 483
TaaI ACNGT 2 cut(s) 49, 287
TasI AATT 2 cut(s) 196, 433
TfiI GAWTC 1 cut(s) 25
TscAI CASTG 2 cut(s) 54, 290
TseFI GTSAC 1 cut(s) 74
TseI GCWGC 5 cut(s) 38, 61, 119, 323, 428
Tsp45I GTSAC 1 cut(s) 74
TspDTI ATGAA 4 cut(s) 253, 314, 461, 484
TspGWI ACGGA 1 cut(s) 336
TspRI CASTG 2 cut(s) 54, 290
Van91I CCANNNNNTGG 1 cut(s) 151
VpaK11BI GGWCC 1 cut(s) 251
XagI CCTNNNNNAGG 1 cut(s) 276
XapI RAATTY 1 cut(s) 433
XcmI CCANNNNNNNNNTGG 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.