Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013963

Physical Location & Seq

Genomic Coordinates Reverse (-)

22320580 .. 22322661

Gene Structure 2082 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G60390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGAGTGAAAGAGATGATGGATTGGGGCTAAGTTTGAGCTTGAGTTTAGGTTTTAATCAAAAGGACCCGTCTTCGAGGTTAAATCCAATGCCTCTGGCTTCTTATGCATCTTCATCACACATGCAGCATATGCAGCAGAGCAATTATAACCATCCTCAAAAGATTCAGAACACTTGGATTAACATGTTTCAGTCATCAGAGAGAAACTCGGACATGAGATCGTTTCTCCGGGGAATAGACGTGAACAGAGCTCCATCGACGGTGGTGGTTGACGTGGAGGATGAAGGCGCCGGAGTTTCGTCTCCGAACAGCACCGTCTCAAGCGTGATGAGCGGGAAGAAGAGCGAGCGAGAGCTAATGGCTGCGGCAGGTGCAGTTGGAGGAGGTAGAGTAGAAGATAATGAGATTGAGAGAGCTTCTTGCTCGCTCGGCGGTGGTAGCGACGATGAAGACGGTAGCGGGAACGGAGATGACAGTTCGAGGAAGAAACTCCGATTGTCTAAAGAACAAGCTTTGGTTCTTGAAGAAACTTTTAAAGAACATAGTACACTCAATCCGAAGCAAAAGATGGCTTTGGCTAAGCAATTGAATCTGAGGACGAGACAAGTTGAAGTGTGGTTCCAAAACCGAAGGGCAAGGACGAAGCTGAAGCAAACGGAAGTAGACTGTGAATATCTTAAGAGATGTTGCGAGAATCTAACGGATGAGAATCGGAGATTGCAAAAGGAAGTGAGTGAGCTTAGGGCTTTAAAGCTTTCTCCACACTTATACATGCACATGAAACCTCCCACTACTCTCACAATGTGTCCTTCTTGCGAGCGAGTCGCTGTTACGTCATCTTCGTCATCGGTGGCTCCTCCTGTGATGAATTCATCGTCTCCGATGGGTCCGATGAGTCCGTGGGCTGCCATGCCTCTACGGCAACGACCTGCTGCTGGTTCTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005911 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009639 GO:0009641 GO:0009719 GO:0009725 GO:0009889 GO:0010033 GO:0010218 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030054 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055044 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ HD-ZIP_N Homeobox

Protein Analysis

315

Amino Acids

34.75

Weight (kDa)

8.49

Isoelectric Point (pI)

65.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HD-ZIP_N	PF04618	1 - 118	2.1e-38	HD-ZIP protein N terminus
Homeodomain	PF00046	161 - 215	8.3e-16	Homeodomain
HALZ	PF02183	217 - 251	4.5e-11	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60390
fragaria_vesca	FvH4_7g09820 FvH4_7g09820 FvH4_7g09820
malus_domestica	MD02G1216800.v1.1
prunus_persica	Prupe.2G127300_v2.0.a1
pyrus_communis	pycom02g17850
rosa_chinensis	RchiOBHm_Chr1g0346981
rosa_laevigata	RLG00000028766
rosa_multiflora	Rmu_co8350045.1_g000001 Rmu_sc0002705.1_g000018
rosa_roxburghii	Rroxscaffold_4G00308000
rosa_samantha	Rh1AG202800 Rh1BG168800 Rh1CG187500 Rh1DG199500
rosa_wichuraiana	Rw1G016990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	147
AarI	CACCTGC	1 cut(s)	359
Acc36I	ACCTGC	2 cut(s)	359, 937
AccB1I	GGYRCC	1 cut(s)	287
AccBSI	CCGCTC	1 cut(s)	333
AccI	GTMKAC	1 cut(s)	663
AciI	CCGC	4 cut(s)	333, 365, 432, 459
AcsI	RAATTY	1 cut(s)	868
AcuI	CTGAAG	1 cut(s)	668
AcyI	GRCGYC	1 cut(s)	288
AdeI	CACNNNGTG	1 cut(s)	804
AfaI	GTAC	1 cut(s)	547
AfiI	CCNNNNNNNGG	1 cut(s)	935
AflII	CTTAAG	1 cut(s)	677
AflIII	ACRYGT	1 cut(s)	183
AgsI	TTSAA	3 cut(s)	524, 589, 611
AjiI	CACGTC	2 cut(s)	241, 274
AluBI	AGCT	8 cut(s)	39, 251, 355, 416, 512, 646, 739, 754
AluI	AGCT	8 cut(s)	39, 251, 355, 416, 512, 646, 739, 754
Alw21I	GWGCWC	1 cut(s)	253
Alw26I	GTCTC	4 cut(s)	306, 322, 595, 882
ApeKI	GCWGC	5 cut(s)	124, 133, 362, 905, 932
ApoI	RAATTY	1 cut(s)	868
AspLEI	GCGC	1 cut(s)	290
AspS9I	GGNCC	2 cut(s)	64, 887
AsuC2I	CCSGG	1 cut(s)	230
AvaII	GGWCC	2 cut(s)	64, 887
BanI	GGYRCC	1 cut(s)	287
BanII	GRGCYC	1 cut(s)	253
BbsI	GAAGAC	2 cut(s)	63, 456
Bbv12I	GWGCWC	1 cut(s)	253
BbvI	GCAGC	5 cut(s)	136, 145, 349, 892, 919
BccI	CCATC	5 cut(s)	11, 159, 262, 562, 877
BceAI	ACGGC	1 cut(s)	935
BcnI	CCSGG	1 cut(s)	230
BcoDI	GTCTC	4 cut(s)	306, 322, 595, 882
BfoI	RGCGCY	1 cut(s)	291
BfrI	CTTAAG	1 cut(s)	677
BfuAI	ACCTGC	2 cut(s)	359, 937
BglI	GCCNNNNNGGC	1 cut(s)	919
BisI	GCNGC	6 cut(s)	125, 134, 363, 366, 906, 933
BlpI	GCTNAGC	1 cut(s)	579
BlsI	GCNGC	6 cut(s)	126, 135, 364, 367, 907, 934
Bme1390I	CCNGG	1 cut(s)	230
Bme18I	GGWCC	2 cut(s)	64, 887
BmgBI	CACGTC	2 cut(s)	241, 274
BmgT120I	GGNCC	2 cut(s)	64, 887
BmiI	GGNNCC	5 cut(s)	66, 289, 620, 855, 888
BmrFI	CCNGG	1 cut(s)	230
BmsI	GCATC	1 cut(s)	116
BpiI	GAAGAC	2 cut(s)	63, 456
BplI	GAGNNNNNCTC	2 cut(s)	191, 223
Bpu10I	CCTNAGC	1 cut(s)	740
Bpu1102I	GCTNAGC	1 cut(s)	579
BpuEI	CTTGAG	2 cut(s)	61, 304
BpuMI	CCSGG	1 cut(s)	230
BsaBI	GATNNNNATC	1 cut(s)	708
BsaHI	GRCGYC	1 cut(s)	288
BsaJI	CCNNGG	2 cut(s)	229, 899
BsaXI	ACNNNNNCTCC	2 cut(s)	375, 405
Bsc4I	CCNNNNNNNGG	1 cut(s)	935
Bse8I	GATNNNNATC	1 cut(s)	708
BseDI	CCNNGG	2 cut(s)	229, 899
BseGI	GGATG	3 cut(s)	151, 286, 709
BseJI	GATNNNNATC	1 cut(s)	708
BseLI	CCNNNNNNNGG	1 cut(s)	935
BseMII	CTCAG	1 cut(s)	584
BseRI	GAGGAG	2 cut(s)	396, 846
BseXI	GCAGC	5 cut(s)	136, 145, 349, 892, 919
BsgI	GTGCAG	1 cut(s)	393
BshNI	GGYRCC	1 cut(s)	287
BsiHKAI	GWGCWC	1 cut(s)	253
BsiSI	CCGG	2 cut(s)	229, 291
BslI	CCNNNNNNNGG	1 cut(s)	935
BsmAI	GTCTC	4 cut(s)	306, 322, 595, 882
BsmBI	CGTCTC	3 cut(s)	306, 322, 882
Bsp1286I	GDGCHC	1 cut(s)	253
Bsp143I	GATC	1 cut(s)	218
Bsp1720I	GCTNAGC	1 cut(s)	579
BspACI	CCGC	4 cut(s)	333, 365, 432, 459
BspCNI	CTCAG	1 cut(s)	585
BspLI	GGNNCC	5 cut(s)	66, 289, 620, 855, 888
BspMI	ACCTGC	2 cut(s)	359, 937
BspQI	GCTCTTC	1 cut(s)	335
BspT107I	GGYRCC	1 cut(s)	287
BspTI	CTTAAG	1 cut(s)	677
BsrBI	CCGCTC	1 cut(s)	333
BssECI	CCNNGG	2 cut(s)	229, 899
BssMI	GATC	1 cut(s)	218
BssNI	GRCGYC	1 cut(s)	288
Bst4CI	ACNGT	5 cut(s)	262, 316, 455, 476, 668
Bst6I	CTCTTC	1 cut(s)	335
BstACI	GRCGYC	1 cut(s)	288
BstAFI	CTTAAG	1 cut(s)	677
BstAPI	GCANNNNNTGC	1 cut(s)	130
BstC8I	GCNNGC	3 cut(s)	347, 425, 818
BstDEI	CTNAG	4 cut(s)	29, 579, 593, 740
BstDSI	CCRYGG	1 cut(s)	899
BstF5I	GGATG	3 cut(s)	151, 286, 709
BstH2I	RGCGCY	1 cut(s)	291
BstHHI	GCGC	1 cut(s)	290
BstKTI	GATC	1 cut(s)	221
BstMAI	GTCTC	4 cut(s)	306, 322, 595, 882
BstMBI	GATC	1 cut(s)	218
BstMWI	GCNNNNNNNGC	8 cut(s)	104, 130, 133, 330, 371, 429, 438, 919
BstNSI	RCATGY	3 cut(s)	124, 187, 775
BstSCI	CCNGG	1 cut(s)	228
BstV1I	GCAGC	5 cut(s)	136, 145, 349, 892, 919
BstV2I	GAAGAC	2 cut(s)	63, 456
BtgI	CCRYGG	1 cut(s)	899
BtrI	CACGTC	2 cut(s)	241, 274
BtsCI	GGATG	3 cut(s)	151, 286, 709
BveI	ACCTGC	2 cut(s)	359, 937
Cac8I	GCNNGC	3 cut(s)	347, 425, 818
CfoI	GCGC	1 cut(s)	290
Cfr13I	GGNCC	2 cut(s)	64, 887
Csp6I	GTAC	1 cut(s)	546
CviAII	CATG	6 cut(s)	121, 184, 214, 772, 778, 910
CviQI	GTAC	1 cut(s)	546
DdeI	CTNAG	4 cut(s)	29, 579, 593, 740
DinI	GGCGCC	1 cut(s)	289
DpnI	GATC	1 cut(s)	220
DpnII	GATC	1 cut(s)	218
DraI	TTTAAA	2 cut(s)	535, 750
DraIII	CACNNNGTG	1 cut(s)	804
Eam1104I	CTCTTC	1 cut(s)	335
EarI	CTCTTC	1 cut(s)	335
Ecl136II	GAGCTC	1 cut(s)	251
Eco24I	GRGCYC	1 cut(s)	253
Eco47I	GGWCC	2 cut(s)	64, 887
Eco53kI	GAGCTC	1 cut(s)	251
Eco57I	CTGAAG	1 cut(s)	668
EcoICRI	GAGCTC	1 cut(s)	251
EcoO109I	RGGNCCY	1 cut(s)	64
EcoRI	GAATTC	1 cut(s)	868
EcoT22I	ATGCAT	1 cut(s)	109
EcoT38I	GRGCYC	1 cut(s)	253
EgeI	GGCGCC	1 cut(s)	289
EheI	GGCGCC	1 cut(s)	289
Esp3I	CGTCTC	3 cut(s)	306, 322, 882
FaeI	CATG	6 cut(s)	124, 187, 217, 775, 781, 913
FatI	CATG	6 cut(s)	120, 183, 213, 771, 777, 909
FauI	CCCGC	2 cut(s)	326, 452
FauNDI	CATATG	1 cut(s)	129
FblI	GTMKAC	1 cut(s)	663
Fnu4HI	GCNGC	6 cut(s)	125, 134, 363, 366, 906, 933
FokI	GGATG	3 cut(s)	138, 293, 716
FriOI	GRGCYC	1 cut(s)	253
Fsp4HI	GCNGC	6 cut(s)	125, 134, 363, 366, 906, 933
GlaI	GCGC	1 cut(s)	289
GluI	GCNGC	6 cut(s)	125, 134, 363, 366, 906, 933
HaeII	RGCGCY	1 cut(s)	291
HapII	CCGG	2 cut(s)	229, 291
HhaI	GCGC	1 cut(s)	290
Hin1I	GRCGYC	1 cut(s)	288
Hin1II	CATG	6 cut(s)	124, 187, 217, 775, 781, 913
Hin6I	GCGC	1 cut(s)	288
HinP1I	GCGC	1 cut(s)	288
HincII	GTYRAC	1 cut(s)	271
HindII	GTYRAC	1 cut(s)	271
HindIII	AAGCTT	2 cut(s)	510, 752
HinfI	GANTC	6 cut(s)	163, 589, 694, 709, 822, 895
HpaII	CCGG	2 cut(s)	229, 291
Hpy166II	GTNNAC	4 cut(s)	244, 271, 548, 664
Hpy188III	TCNNGA	1 cut(s)	521
Hpy8I	GTNNAC	4 cut(s)	244, 271, 548, 664
Hpy99I	CGWCG	2 cut(s)	262, 446
HpyAV	CCTTC	3 cut(s)	278, 624, 819
HpyCH4III	ACNGT	5 cut(s)	262, 316, 455, 476, 668
HpyCH4IV	ACGT	3 cut(s)	240, 273, 833
HpyCH4V	TGCA	6 cut(s)	107, 124, 133, 374, 721, 775
HpyF10VI	GCNNNNNNNGC	8 cut(s)	104, 130, 133, 330, 371, 429, 438, 919
HpyF3I	CTNAG	4 cut(s)	29, 579, 593, 740
HpySE526I	ACGT	3 cut(s)	240, 273, 833
Hsp92I	GRCGYC	1 cut(s)	288
Hsp92II	CATG	6 cut(s)	124, 187, 217, 775, 781, 913
HspAI	GCGC	1 cut(s)	288
KasI	GGCGCC	1 cut(s)	287
Kzo9I	GATC	1 cut(s)	218
LguI	GCTCTTC	1 cut(s)	335
LmnI	GCTCC	2 cut(s)	256, 859
LpnPI	CCDG	7 cut(s)	80, 242, 304, 354, 873, 921, 942
Lsp1109I	GCAGC	5 cut(s)	136, 145, 349, 892, 919
LweI	GCATC	1 cut(s)	116
MaeII	ACGT	3 cut(s)	240, 273, 833
MaeIII	GTNAC	1 cut(s)	829
MalI	GATC	1 cut(s)	220
MbiI	CCGCTC	1 cut(s)	333
MboI	GATC	1 cut(s)	218
MboII	GAAGA	9 cut(s)	63, 102, 349, 352, 407, 461, 496, 536, 831
MfeI	CAATTG	1 cut(s)	584
MhlI	GDGCHC	1 cut(s)	253
MluCI	AATT	3 cut(s)	142, 584, 868
Mly113I	GGCGCC	1 cut(s)	288
MlyI	GAGTC	2 cut(s)	831, 904
MmeI	TCCRAC	1 cut(s)	358
Mph1103I	ATGCAT	1 cut(s)	109
MseI	TTAA	6 cut(s)	54, 80, 180, 534, 678, 749
MslI	CAYNNNNRTG	1 cut(s)	776
MspCI	CTTAAG	1 cut(s)	677
MspI	CCGG	2 cut(s)	229, 291
MspR9I	CCNGG	1 cut(s)	230
MunI	CAATTG	1 cut(s)	584
MwoI	GCNNNNNNNGC	8 cut(s)	104, 130, 133, 330, 371, 429, 438, 919
NarI	GGCGCC	1 cut(s)	288
NciI	CCSGG	1 cut(s)	230
NdeI	CATATG	1 cut(s)	129
NdeII	GATC	1 cut(s)	218
NlaIII	CATG	6 cut(s)	124, 187, 217, 775, 781, 913
NlaIV	GGNNCC	5 cut(s)	66, 289, 620, 855, 888
NmeAIII	GCCGAG	1 cut(s)	408
NsiI	ATGCAT	1 cut(s)	109
NspI	RCATGY	3 cut(s)	124, 187, 775
PaqCI	CACCTGC	1 cut(s)	359
PciI	ACATGT	1 cut(s)	183
PciSI	GCTCTTC	1 cut(s)	335
PcsI	WCGNNNNNNNCGW	1 cut(s)	839
PfeI	GAWTC	4 cut(s)	163, 589, 694, 709
PkrI	GCNGC	6 cut(s)	126, 135, 364, 367, 907, 934
PleI	GAGTC	2 cut(s)	830, 903
PluTI	GGCGCC	1 cut(s)	291
PpsI	GAGTC	2 cut(s)	830, 903
PpuMI	RGGWCCY	1 cut(s)	64
PscI	ACATGT	1 cut(s)	183
PsiI	TTATAA	1 cut(s)	147
Psp124BI	GAGCTC	1 cut(s)	253
Psp5II	RGGWCCY	1 cut(s)	64
PspN4I	GGNNCC	5 cut(s)	66, 289, 620, 855, 888
PspPI	GGNCC	2 cut(s)	64, 887
PspPPI	RGGWCCY	1 cut(s)	64
RsaI	GTAC	1 cut(s)	547
RsaNI	GTAC	1 cut(s)	546
RseI	CAYNNNNRTG	1 cut(s)	776
SacI	GAGCTC	1 cut(s)	253
SapI	GCTCTTC	1 cut(s)	335
SaqAI	TTAA	6 cut(s)	54, 80, 180, 534, 678, 749
SatI	GCNGC	6 cut(s)	125, 134, 363, 366, 906, 933
Sau3AI	GATC	1 cut(s)	218
Sau96I	GGNCC	2 cut(s)	64, 887
SchI	GAGTC	2 cut(s)	831, 904
ScrFI	CCNGG	1 cut(s)	230
SduI	GDGCHC	1 cut(s)	253
SfaNI	GCATC	1 cut(s)	116
SfoI	GGCGCC	1 cut(s)	289
SinI	GGWCC	2 cut(s)	64, 887
SmiMI	CAYNNNNRTG	1 cut(s)	776
SmlI	CTYRAG	3 cut(s)	40, 319, 677
SmoI	CTYRAG	3 cut(s)	40, 319, 677
Sse9I	AATT	3 cut(s)	142, 584, 868
SsiI	CCGC	4 cut(s)	333, 365, 432, 459
SspDI	GGCGCC	1 cut(s)	287
SstI	GAGCTC	1 cut(s)	253
StyD4I	CCNGG	1 cut(s)	228
TaaI	ACNGT	5 cut(s)	262, 316, 455, 476, 668
TaiI	ACGT	3 cut(s)	243, 276, 836
TaqI	TCGA	3 cut(s)	74, 257, 479
TasI	AATT	3 cut(s)	142, 584, 868
TatI	WGTACW	1 cut(s)	545
TauI	GCSGC	1 cut(s)	368
TfiI	GAWTC	4 cut(s)	163, 589, 694, 709
Tru1I	TTAA	6 cut(s)	54, 80, 180, 534, 678, 749
Tru9I	TTAA	6 cut(s)	54, 80, 180, 534, 678, 749
TseI	GCWGC	5 cut(s)	124, 133, 362, 905, 932
TspDTI	ATGAA	6 cut(s)	102, 297, 462, 794, 861, 881
TspGWI	ACGGA	4 cut(s)	480, 671, 716, 888
Vha464I	CTTAAG	1 cut(s)	677
VpaK11BI	GGWCC	2 cut(s)	64, 887
XapI	RAATTY	1 cut(s)	868
XceI	RCATGY	3 cut(s)	124, 187, 775
XmiI	GTMKAC	1 cut(s)	663
Zsp2I	ATGCAT	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.