Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0013963

Physical Location & Seq

Genomic Coordinates Forward (+)

9378801 .. 9381308

Gene Structure 2508 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g09820.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGAGTGACAAGAATGATGAGTTGGGTTTGAGTCTGGGTCTAGGTTTAGGTTATGGAGCCAACCGGTCTTCTTCCTTCTCCTCTTTTCACTTGAATCTCATGCAGAATCCTCCAGACACAACCCTCAATCTTCAGCGAGTTTTTGGATTCACTGATCGAAATGCGACGTCGTTTCGGCGAGTAATCGACGTGAACCAGCTTCCGGCGGCGGTGGGGGATTTCGACGACGAAAACGGCGTGTCGTCTCCCAACAGCACAGTGTCTAGCCAGAGCGGGAAGAGGAGCGAGAGAGGCGACGAGAACGAGGCGGAGAGGACGTCGTGCTCGCTCGGCGGGAGCGACGACGAGGACGGCAATGGCGGCGGCGACACGTCGAAGAAGAAGCTCCGGCTCACCAAGGAGCAGTCTCTGCTGCTTGAGGACTTGTTCAAGGACCAACACACTCTCAACACGAGGCAAAAGCAGGAGTTGGCACAGAAGTTGAACCTGAGTGCAAGACAAGTGGAGGTTTGGTTTCAGAACAGGAGGGCAAGGACTAAGTTGAAGCAAACAGAGGTGGACTGTGAGCAGCTAAGAAAGTGCTGTGAGAATCTAACAGAAGAGAACAAGAGGTTGCAGAAAGAAGTGCAAGAGCTGAGGGCACTCAAGCTTTCGCCACAGTTCTACATGCAAATGAACCCTCCCACAACTCTCACCATGTGCCCTTCATGCCAATGTGTGGCTGTCTCATCCTCATCGGCGGCATCTTCTGCTACTGCTACTACTGCTTCCTCCACAGTTCCGGTCACTGGCCCTACTGGCAACCCAGGGCTCCCAGCAATCCAAATGCCTGTTCCAATCAGCCCTTGGGCTACATTGCCAATCCCACATCATCGACCAGTTGATGCACCTGCATCTCAGTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005911 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009639 GO:0009641 GO:0009719 GO:0009725 GO:0009889 GO:0010033 GO:0010218 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030054 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055044 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ HD-ZIP_N Homeobox

Protein Analysis

302

Amino Acids

32.84

Weight (kDa)

6.14

Isoelectric Point (pI)

58.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HD-ZIP_N	PF04618	1 - 97	4.5e-20	HD-ZIP protein N terminus
Homeodomain	PF00046	126 - 180	2.1e-16	Homeodomain
HALZ	PF02183	182 - 216	8.6e-10	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60390
fragaria_vesca	FvH4_7g09820 FvH4_7g09820 FvH4_7g09820
malus_domestica	MD02G1216800.v1.1
prunus_persica	Prupe.2G127300_v2.0.a1
pyrus_communis	pycom02g17850
rosa_chinensis	RchiOBHm_Chr1g0346981
rosa_laevigata	RLG00000028766
rosa_multiflora	Rmu_co8350045.1_g000001 Rmu_sc0002705.1_g000018
rosa_roxburghii	Rroxscaffold_4G00308000
rosa_samantha	Rh1AG202800 Rh1BG168800 Rh1CG187500 Rh1DG199500
rosa_wichuraiana	Rw1G016990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	898
AatII	GACGTC	2 cut(s)	170, 320
Acc36I	ACCTGC	1 cut(s)	898
AccB7I	CCANNNNNTGG	1 cut(s)	718
AccBSI	CCGCTC	1 cut(s)	273
AciI	CCGC	8 cut(s)	206, 209, 273, 308, 333, 360, 363, 740
AcuI	CTGAAG	1 cut(s)	116
AcyI	GRCGYC	2 cut(s)	167, 317
AdeI	CACNNNGTG	1 cut(s)	699
AfiI	CCNNNNNNNGG	3 cut(s)	202, 718, 788
AflIII	ACRYGT	1 cut(s)	369
AgeI	ACCGGT	1 cut(s)	63
AgsI	TTSAA	4 cut(s)	94, 430, 484, 544
AjiI	CACGTC	2 cut(s)	190, 372
AjnI	CCWGG	1 cut(s)	805
AjuI	GAANNNNNNNTTGG	3 cut(s)	37, 816, 848
AluBI	AGCT	5 cut(s)	199, 385, 571, 634, 649
AluI	AGCT	5 cut(s)	199, 385, 571, 634, 649
Alw21I	GWGCWC	1 cut(s)	326
Alw26I	GTCTC	3 cut(s)	249, 411, 730
AlwNI	CAGNNNCTG	1 cut(s)	409
AoxI	GGCC	1 cut(s)	790
ApeKI	GCWGC	2 cut(s)	412, 568
AsiGI	ACCGGT	1 cut(s)	63
AspS9I	GGNCC	2 cut(s)	433, 791
AsuHPI	GGTGA	2 cut(s)	385, 685
AvaII	GGWCC	1 cut(s)	433
BaeGI	GKGCMC	2 cut(s)	643, 704
BanII	GRGCYC	1 cut(s)	813
BauI	CACGAG	1 cut(s)	451
BbsI	GAAGAC	1 cut(s)	60
Bbv12I	GWGCWC	1 cut(s)	326
BbvCI	CCTCAGC	1 cut(s)	635
BbvI	GCAGC	2 cut(s)	399, 580
BceAI	ACGGC	2 cut(s)	250, 367
BcgI	CGANNNNNNTGC	1 cut(s)	882
BciT130I	CCWGG	1 cut(s)	807
BcoDI	GTCTC	3 cut(s)	249, 411, 730
BfaI	CTAG	2 cut(s)	41, 264
BfuAI	ACCTGC	1 cut(s)	898
BglI	GCCNNNNNGGC	1 cut(s)	798
BisI	GCNGC	6 cut(s)	207, 361, 364, 413, 569, 741
BlsI	GCNGC	6 cut(s)	208, 362, 365, 414, 570, 742
Bme1390I	CCNGG	1 cut(s)	807
Bme18I	GGWCC	1 cut(s)	433
BmgBI	CACGTC	2 cut(s)	190, 372
BmgT120I	GGNCC	2 cut(s)	433, 791
BmiI	GGNNCC	2 cut(s)	58, 812
BmrFI	CCNGG	1 cut(s)	807
BmsI	GCATC	3 cut(s)	752, 874, 902
BpiI	GAAGAC	1 cut(s)	60
BpmI	CTGGAG	1 cut(s)	96
Bpu10I	CCTNAGC	1 cut(s)	635
BpuEI	CTTGAG	2 cut(s)	437, 629
BsaHI	GRCGYC	2 cut(s)	167, 317
BsaJI	CCNNGG	4 cut(s)	396, 805, 806, 845
BsaWI	WCCGGW	2 cut(s)	63, 781
BsaXI	ACNNNNNCTCC	4 cut(s)	302, 332, 497, 527
Bsc4I	CCNNNNNNNGG	3 cut(s)	202, 718, 788
Bse118I	RCCGGY	1 cut(s)	63
Bse1I	ACTGG	3 cut(s)	793, 802, 878
Bse3DI	GCAATG	2 cut(s)	361, 854
BseBI	CCWGG	1 cut(s)	807
BseDI	CCNNGG	4 cut(s)	396, 805, 806, 845
BseGI	GGATG	1 cut(s)	728
BseLI	CCNNNNNNNGG	3 cut(s)	202, 718, 788
BseMI	GCAATG	2 cut(s)	361, 854
BseMII	CTCAG	2 cut(s)	479, 626
BseNI	ACTGG	3 cut(s)	793, 802, 878
BseRI	GAGGAG	2 cut(s)	70, 295
BseSI	GKGCMC	2 cut(s)	643, 704
BseXI	GCAGC	2 cut(s)	399, 580
BseYI	CCCAGC	1 cut(s)	814
BshFI	GGCC	1 cut(s)	792
BshTI	ACCGGT	1 cut(s)	63
BsiHKAI	GWGCWC	1 cut(s)	326
BsiSI	CCGG	4 cut(s)	64, 203, 388, 782
BslI	CCNNNNNNNGG	3 cut(s)	202, 718, 788
BsmAI	GTCTC	3 cut(s)	249, 411, 730
BsmBI	CGTCTC	1 cut(s)	249
BsnI	GGCC	1 cut(s)	792
Bsp1286I	GDGCHC	4 cut(s)	326, 643, 704, 813
Bsp143I	GATC	1 cut(s)	154
BspACI	CCGC	8 cut(s)	206, 209, 273, 308, 333, 360, 363, 740
BspANI	GGCC	1 cut(s)	792
BspCNI	CTCAG	2 cut(s)	480, 627
BspLI	GGNNCC	2 cut(s)	58, 812
BspMI	ACCTGC	1 cut(s)	898
BsrBI	CCGCTC	1 cut(s)	273
BsrDI	GCAATG	2 cut(s)	361, 854
BsrFI	RCCGGY	1 cut(s)	63
BsrI	ACTGG	3 cut(s)	793, 802, 878
BssAI	RCCGGY	1 cut(s)	63
BssECI	CCNNGG	4 cut(s)	396, 805, 806, 845
BssMI	GATC	1 cut(s)	154
BssNI	GRCGYC	2 cut(s)	167, 317
BssSI	CACGAG	1 cut(s)	451
BssT1I	CCWWGG	2 cut(s)	396, 845
Bst2BI	CACGAG	1 cut(s)	451
Bst2UI	CCWGG	1 cut(s)	807
Bst4CI	ACNGT	4 cut(s)	259, 563, 660, 778
Bst6I	CTCTTC	2 cut(s)	272, 594
BstACI	GRCGYC	2 cut(s)	167, 317
BstAPI	GCANNNNNTGC	2 cut(s)	409, 749
BstC8I	GCNNGC	1 cut(s)	326
BstDEI	CTNAG	5 cut(s)	488, 537, 572, 635, 897
BstF5I	GGATG	1 cut(s)	728
BstKTI	GATC	1 cut(s)	157
BstMAI	GTCTC	3 cut(s)	249, 411, 730
BstMBI	GATC	1 cut(s)	154
BstMWI	GCNNNNNNNGC	8 cut(s)	291, 330, 360, 409, 708, 749, 764, 798
BstNI	CCWGG	1 cut(s)	807
BstNSI	RCATGY	1 cut(s)	670
BstSCI	CCNGG	1 cut(s)	805
BstSLI	GKGCMC	2 cut(s)	643, 704
BstV1I	GCAGC	2 cut(s)	399, 580
BstV2I	GAAGAC	1 cut(s)	60
BsuRI	GGCC	1 cut(s)	792
BtrI	CACGTC	2 cut(s)	190, 372
BtsCI	GGATG	1 cut(s)	728
BtsIMutI	CAGTG	3 cut(s)	150, 264, 786
BveI	ACCTGC	1 cut(s)	898
Cac8I	GCNNGC	1 cut(s)	326
CaiI	CAGNNNCTG	1 cut(s)	409
Cfr10I	RCCGGY	1 cut(s)	63
Cfr13I	GGNCC	2 cut(s)	433, 791
CspAI	ACCGGT	1 cut(s)	63
CspCI	CAANNNNNGTGG	2 cut(s)	483, 518
CviAII	CATG	4 cut(s)	100, 667, 697, 708
DdeI	CTNAG	5 cut(s)	488, 537, 572, 635, 897
DpnI	GATC	1 cut(s)	156
DpnII	GATC	1 cut(s)	154
DraIII	CACNNNGTG	1 cut(s)	699
Eam1104I	CTCTTC	2 cut(s)	272, 594
EarI	CTCTTC	2 cut(s)	272, 594
EciI	GGCGGA	1 cut(s)	323
Eco130I	CCWWGG	2 cut(s)	396, 845
Eco24I	GRGCYC	1 cut(s)	813
Eco47I	GGWCC	1 cut(s)	433
Eco57I	CTGAAG	1 cut(s)	116
EcoRII	CCWGG	1 cut(s)	805
EcoT14I	CCWWGG	2 cut(s)	396, 845
EcoT38I	GRGCYC	1 cut(s)	813
ErhI	CCWWGG	2 cut(s)	396, 845
Esp3I	CGTCTC	1 cut(s)	249
FaeI	CATG	4 cut(s)	103, 670, 700, 711
FaiI	YATR	5 cut(s)	54, 101, 668, 698, 709
FatI	CATG	4 cut(s)	99, 666, 696, 707
FauI	CCCGC	2 cut(s)	266, 326
Fnu4HI	GCNGC	6 cut(s)	207, 361, 364, 413, 569, 741
FokI	GGATG	1 cut(s)	715
FriOI	GRGCYC	1 cut(s)	813
Fsp4HI	GCNGC	6 cut(s)	207, 361, 364, 413, 569, 741
FspBI	CTAG	2 cut(s)	41, 264
GluI	GCNGC	6 cut(s)	207, 361, 364, 413, 569, 741
GsaI	CCCAGC	1 cut(s)	818
GsuI	CTGGAG	1 cut(s)	96
HaeIII	GGCC	1 cut(s)	792
HapII	CCGG	4 cut(s)	64, 203, 388, 782
Hin1I	GRCGYC	2 cut(s)	167, 317
Hin1II	CATG	4 cut(s)	103, 670, 700, 711
HindIII	AAGCTT	1 cut(s)	647
HinfI	GANTC	5 cut(s)	31, 94, 106, 147, 589
HpaII	CCGG	4 cut(s)	64, 203, 388, 782
HphI	GGTGA	2 cut(s)	385, 685
Hpy166II	GTNNAC	2 cut(s)	193, 559
Hpy188I	TCNGA	1 cut(s)	519
Hpy188III	TCNNGA	2 cut(s)	113, 903
Hpy8I	GTNNAC	2 cut(s)	193, 559
HpyAV	CCTTC	2 cut(s)	85, 714
HpyCH4III	ACNGT	4 cut(s)	259, 563, 660, 778
HpyCH4IV	ACGT	4 cut(s)	167, 189, 317, 371
HpyCH4V	TGCA	7 cut(s)	103, 494, 616, 628, 670, 887, 893
HpyF10VI	GCNNNNNNNGC	8 cut(s)	291, 330, 360, 409, 708, 749, 764, 798
HpyF3I	CTNAG	5 cut(s)	488, 537, 572, 635, 897
HpySE526I	ACGT	4 cut(s)	167, 189, 317, 371
Hsp92I	GRCGYC	2 cut(s)	167, 317
Hsp92II	CATG	4 cut(s)	103, 670, 700, 711
Kzo9I	GATC	1 cut(s)	154
LmnI	GCTCC	6 cut(s)	56, 282, 336, 390, 400, 816
Lsp1109I	GCAGC	2 cut(s)	399, 580
LweI	GCATC	3 cut(s)	752, 874, 902
MaeI	CTAG	2 cut(s)	41, 264
MaeII	ACGT	4 cut(s)	167, 189, 317, 371
MaeIII	GTNAC	2 cut(s)	5, 784
MalI	GATC	1 cut(s)	156
MbiI	CCGCTC	1 cut(s)	273
MboI	GATC	1 cut(s)	154
MboII	GAAGA	8 cut(s)	60, 63, 122, 289, 388, 391, 611, 738
MhlI	GDGCHC	4 cut(s)	326, 643, 704, 813
MlyI	GAGTC	1 cut(s)	40
MslI	CAYNNNNRTG	2 cut(s)	671, 712
MspI	CCGG	4 cut(s)	64, 203, 388, 782
MspR9I	CCNGG	1 cut(s)	807
MvaI	CCWGG	1 cut(s)	807
MwoI	GCNNNNNNNGC	8 cut(s)	291, 330, 360, 409, 708, 749, 764, 798
NdeII	GATC	1 cut(s)	154
NlaIII	CATG	4 cut(s)	103, 670, 700, 711
NlaIV	GGNNCC	2 cut(s)	58, 812
NmeAIII	GCCGAG	1 cut(s)	309
NmuCI	GTSAC	2 cut(s)	5, 784
NspI	RCATGY	1 cut(s)	670
PaqCI	CACCTGC	1 cut(s)	898
PasI	CCCWGGG	1 cut(s)	806
PcsI	WCGNNNNNNNCGW	2 cut(s)	234, 336
PfeI	GAWTC	4 cut(s)	94, 106, 147, 589
PflMI	CCANNNNNTGG	1 cut(s)	718
PinAI	ACCGGT	1 cut(s)	63
PkrI	GCNGC	6 cut(s)	208, 362, 365, 414, 570, 742
PleI	GAGTC	1 cut(s)	39
PpsI	GAGTC	1 cut(s)	39
Psp6I	CCWGG	1 cut(s)	805
PspFI	CCCAGC	1 cut(s)	814
PspGI	CCWGG	1 cut(s)	805
PspN4I	GGNNCC	2 cut(s)	58, 812
PspPI	GGNCC	2 cut(s)	433, 791
PstNI	CAGNNNCTG	1 cut(s)	409
RseI	CAYNNNNRTG	2 cut(s)	671, 712
SatI	GCNGC	6 cut(s)	207, 361, 364, 413, 569, 741
Sau3AI	GATC	1 cut(s)	154
Sau96I	GGNCC	2 cut(s)	433, 791
SchI	GAGTC	1 cut(s)	40
ScrFI	CCNGG	1 cut(s)	807
SduI	GDGCHC	4 cut(s)	326, 643, 704, 813
SfaNI	GCATC	3 cut(s)	752, 874, 902
SinI	GGWCC	1 cut(s)	433
SmiMI	CAYNNNNRTG	2 cut(s)	671, 712
SmlI	CTYRAG	2 cut(s)	416, 644
SmoI	CTYRAG	2 cut(s)	416, 644
SsiI	CCGC	8 cut(s)	206, 209, 273, 308, 333, 360, 363, 740
SspMI	CTAG	2 cut(s)	41, 264
StyD4I	CCNGG	1 cut(s)	805
StyI	CCWWGG	2 cut(s)	396, 845
TaaI	ACNGT	4 cut(s)	259, 563, 660, 778
TaiI	ACGT	4 cut(s)	170, 192, 320, 374
TaqI	TCGA	5 cut(s)	157, 186, 222, 374, 874
TauI	GCSGC	4 cut(s)	209, 363, 366, 743
TfiI	GAWTC	4 cut(s)	94, 106, 147, 589
TscAI	CASTG	3 cut(s)	157, 264, 793
TseFI	GTSAC	2 cut(s)	5, 784
TseI	GCWGC	2 cut(s)	412, 568
Tsp45I	GTSAC	2 cut(s)	5, 784
TspDTI	ATGAA	2 cut(s)	689, 696
TspRI	CASTG	3 cut(s)	157, 264, 793
Van91I	CCANNNNNTGG	1 cut(s)	718
VpaK11BI	GGWCC	1 cut(s)	433
XceI	RCATGY	1 cut(s)	670
XcmI	CCANNNNNNNNNTGG	1 cut(s)	843
XspI	CTAG	2 cut(s)	41, 264
ZraI	GACGTC	2 cut(s)	168, 318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.