Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0013963

Physical Location & Seq

Genomic Coordinates Reverse (-)

16073163 .. 16075330

Gene Structure 2168 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g17850.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGAGTGAGAACATGAAAGATATGAATGGGTTGGGGTTGGGGTTGGGATTGAGTCTGAGCTTGGGATTGAAACCCAATGAGAGTGAGCCTTGTTTGCAGTTGAATCTCATGGAGAAGCCTTCACACCCCATGCAGAATCACCCTCACAGAACTTCATGGAATGAAAGCTTCCAATTTCCTGATCGAAACCCAGATACGAGGTCGTTTCTCATAGACGTGAACGAGGCGCCATCGATGGTGGATTTCGAGGAAGAAAACGGGGTTTCATCGCCGAACAGCACGGTGTCGAGCCTGAGCGGGAAGAGAAGCGATAGGGAGCCCATCGTCGACGAGAACGAGGGCGAGAGGACCTCGTGCTCCCACGGCGGCGGCAGCGACGACGAAGATGGCAACGGCGGCGACATGTCAAGGAAGAAGCTGAGGCTGTCGAAGGAGCAGTCTCTGCTCCTCGAGGAGAATTTTAAGGAGCACAACACTCTGAATCCGAAGCAGAAGCAGGAGTTGGCAAAGCAGCTGAACCTAAGACCAAGACAAGTGGAGGTCTGGTTTCAGAACAGGAGGGCAAGGACTAAGTTAAAGCAAACAGAGGTGGATTGTGAATTACTAAAGAGGTGCTGTGAGAAACTAACAGAGGACAACAGGAGGTTGCACAAGGAAGTGCAAGAGCTTAGAGCACTCAAACTCTCACCACAGTTCTACATGCAGATGAACCCTCCCACAACCCTCACCATGTGCCCGTCATGTGAGCGTGTAGCCGTCTCATCCTCGTCATCTTCTGCTGCTGCTCCTGCTTCCTCCCCAACTCTTGCAAATGGCCCGACCTGCCAAAATGGTCCGCCTAATATCCAACGCCCTATCCCCATCAGCCCGTGGGCGAAATTGCCGATCCAACATCGAACGCTTGATGCTTCCGCCCCTCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005911 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009639 GO:0009641 GO:0009719 GO:0009725 GO:0009889 GO:0010033 GO:0010218 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030054 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055044 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ HD-ZIP_N Homeobox

Protein Analysis

308

Amino Acids

34.35

Weight (kDa)

6.41

Isoelectric Point (pI)

56.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60390
fragaria_vesca	FvH4_7g09820 FvH4_7g09820 FvH4_7g09820
malus_domestica	MD02G1216800.v1.1
prunus_persica	Prupe.2G127300_v2.0.a1
pyrus_communis	pycom02g17850
rosa_chinensis	RchiOBHm_Chr1g0346981
rosa_laevigata	RLG00000028766
rosa_multiflora	Rmu_co8350045.1_g000001 Rmu_sc0002705.1_g000018
rosa_roxburghii	Rroxscaffold_4G00308000
rosa_samantha	Rh1AG202800 Rh1BG168800 Rh1CG187500 Rh1DG199500
rosa_wichuraiana	Rw1G016990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	449
Acc36I	ACCTGC	1 cut(s)	830
AccB1I	GGYRCC	1 cut(s)	226
AccBSI	CCGCTC	1 cut(s)	297
AccI	GTMKAC	1 cut(s)	327
AciI	CCGC	6 cut(s)	297, 366, 369, 396, 836, 912
AclWI	GGATC	1 cut(s)	880
AcsI	RAATTY	1 cut(s)	457
AcyI	GRCGYC	1 cut(s)	227
AdeI	CACNNNGTG	1 cut(s)	732
AfiI	CCNNNNNNNGG	1 cut(s)	918
AflIII	ACRYGT	1 cut(s)	402
AgsI	TTSAA	2 cut(s)	70, 103
AjiI	CACGTC	1 cut(s)	217
AjuI	GAANNNNNNNTTGG	2 cut(s)	485, 517
AluBI	AGCT	5 cut(s)	60, 168, 418, 514, 667
AluI	AGCT	5 cut(s)	60, 168, 418, 514, 667
Alw21I	GWGCWC	3 cut(s)	359, 471, 676
Alw26I	GTCTC	2 cut(s)	444, 763
AlwI	GGATC	1 cut(s)	880
AlwNI	CAGNNNCTG	1 cut(s)	442
Ama87I	CYCGRG	1 cut(s)	449
AoxI	GGCC	1 cut(s)	814
ApeKI	GCWGC	4 cut(s)	372, 511, 779, 782
ApoI	RAATTY	1 cut(s)	457
ArsI	GACNNNNNNTTYG	2 cut(s)	422, 454
AspLEI	GCGC	1 cut(s)	229
AspS9I	GGNCC	3 cut(s)	348, 815, 833
AsuHPI	GGTGA	3 cut(s)	131, 678, 718
AvaI	CYCGRG	1 cut(s)	449
AvaII	GGWCC	2 cut(s)	348, 833
BaeGI	GKGCMC	1 cut(s)	737
BanI	GGYRCC	1 cut(s)	226
BanII	GRGCYC	1 cut(s)	321
BauI	CACGAG	1 cut(s)	352
Bbv12I	GWGCWC	3 cut(s)	359, 471, 676
BbvCI	CCTCAGC	1 cut(s)	419
BbvI	GCAGC	4 cut(s)	384, 523, 766, 769
BccI	CCATC	5 cut(s)	229, 238, 329, 380, 869
BceAI	ACGGC	3 cut(s)	379, 409, 740
BcoDI	GTCTC	2 cut(s)	444, 763
BfoI	RGCGCY	1 cut(s)	230
BfuAI	ACCTGC	1 cut(s)	830
BisI	GCNGC	7 cut(s)	367, 370, 373, 397, 512, 780, 783
BlsI	GCNGC	7 cut(s)	368, 371, 374, 398, 513, 781, 784
Bme18I	GGWCC	2 cut(s)	348, 833
BmeT110I	CYCGRG	1 cut(s)	449
BmgBI	CACGTC	1 cut(s)	217
BmgT120I	GGNCC	3 cut(s)	348, 815, 833
BmiI	GGNNCC	2 cut(s)	228, 318
BmsI	GCATC	1 cut(s)	895
BplI	GAGNNNNNCTC	2 cut(s)	335, 367
Bpu10I	CCTNAGC	2 cut(s)	293, 419
Bsa29I	ATCGAT	1 cut(s)	233
BsaHI	GRCGYC	1 cut(s)	227
BsaJI	CCNNGG	3 cut(s)	361, 869, 917
BsaXI	ACNNNNNCTCC	2 cut(s)	530, 560
Bsc4I	CCNNNNNNNGG	1 cut(s)	918
BseCI	ATCGAT	1 cut(s)	233
BseDI	CCNNGG	3 cut(s)	361, 869, 917
BseGI	GGATG	1 cut(s)	761
BseLI	CCNNNNNNNGG	1 cut(s)	918
BseMII	CTCAG	3 cut(s)	47, 284, 410
BseRI	GAGGAG	2 cut(s)	437, 467
BseSI	GKGCMC	1 cut(s)	737
BseXI	GCAGC	4 cut(s)	384, 523, 766, 769
BshFI	GGCC	1 cut(s)	816
BshNI	GGYRCC	1 cut(s)	226
BshVI	ATCGAT	1 cut(s)	233
BsiHKAI	GWGCWC	3 cut(s)	359, 471, 676
BsiHKCI	CYCGRG	1 cut(s)	449
BslI	CCNNNNNNNGG	1 cut(s)	918
BsmAI	GTCTC	2 cut(s)	444, 763
BsmBI	CGTCTC	1 cut(s)	763
BsnI	GGCC	1 cut(s)	816
BsoBI	CYCGRG	1 cut(s)	449
Bsp1286I	GDGCHC	5 cut(s)	321, 359, 471, 676, 737
Bsp143I	GATC	2 cut(s)	181, 885
BspACI	CCGC	6 cut(s)	297, 366, 369, 396, 836, 912
BspANI	GGCC	1 cut(s)	816
BspCNI	CTCAG	3 cut(s)	48, 285, 411
BspDI	ATCGAT	1 cut(s)	233
BspLI	GGNNCC	2 cut(s)	228, 318
BspMI	ACCTGC	1 cut(s)	830
BspPI	GGATC	1 cut(s)	880
BspT107I	GGYRCC	1 cut(s)	226
BsrBI	CCGCTC	1 cut(s)	297
BssECI	CCNNGG	3 cut(s)	361, 869, 917
BssMI	GATC	2 cut(s)	181, 885
BssNI	GRCGYC	1 cut(s)	227
BssSI	CACGAG	1 cut(s)	352
Bst2BI	CACGAG	1 cut(s)	352
Bst4CI	ACNGT	2 cut(s)	283, 693
Bst6I	CTCTTC	1 cut(s)	296
BstACI	GRCGYC	1 cut(s)	227
BstAPI	GCANNNNNTGC	1 cut(s)	442
BstDEI	CTNAG	6 cut(s)	56, 293, 419, 521, 570, 668
BstDSI	CCRYGG	2 cut(s)	361, 869
BstF5I	GGATG	1 cut(s)	761
BstH2I	RGCGCY	1 cut(s)	230
BstHHI	GCGC	1 cut(s)	229
BstKTI	GATC	2 cut(s)	184, 888
BstMAI	GTCTC	2 cut(s)	444, 763
BstMBI	GATC	2 cut(s)	181, 885
BstMWI	GCNNNNNNNGC	7 cut(s)	94, 363, 372, 396, 442, 788, 822
BstNSI	RCATGY	2 cut(s)	406, 703
BstSLI	GKGCMC	1 cut(s)	737
BstV1I	GCAGC	4 cut(s)	384, 523, 766, 769
Bsu15I	ATCGAT	1 cut(s)	233
BsuRI	GGCC	1 cut(s)	816
BsuTUI	ATCGAT	1 cut(s)	233
BtgI	CCRYGG	2 cut(s)	361, 869
BtgZI	GCGATG	1 cut(s)	252
BtrI	CACGTC	1 cut(s)	217
BtsCI	GGATG	1 cut(s)	761
BveI	ACCTGC	1 cut(s)	830
CaiI	CAGNNNCTG	1 cut(s)	442
CfoI	GCGC	1 cut(s)	229
Cfr13I	GGNCC	3 cut(s)	348, 815, 833
ClaI	ATCGAT	1 cut(s)	233
CspCI	CAANNNNNGTGG	2 cut(s)	516, 551
CviAII	CATG	8 cut(s)	13, 109, 130, 156, 403, 700, 730, 741
DdeI	CTNAG	6 cut(s)	56, 293, 419, 521, 570, 668
DinI	GGCGCC	1 cut(s)	228
DpnI	GATC	2 cut(s)	183, 887
DpnII	GATC	2 cut(s)	181, 885
DraIII	CACNNNGTG	1 cut(s)	732
Eam1104I	CTCTTC	1 cut(s)	296
EarI	CTCTTC	1 cut(s)	296
EciI	GGCGGA	2 cut(s)	825, 901
Eco24I	GRGCYC	1 cut(s)	321
Eco47I	GGWCC	2 cut(s)	348, 833
Eco88I	CYCGRG	1 cut(s)	449
EcoO109I	RGGNCCY	1 cut(s)	348
EcoT38I	GRGCYC	1 cut(s)	321
EgeI	GGCGCC	1 cut(s)	228
EheI	GGCGCC	1 cut(s)	228
Esp3I	CGTCTC	1 cut(s)	763
FaeI	CATG	8 cut(s)	16, 112, 133, 159, 406, 703, 733, 744
FatI	CATG	8 cut(s)	12, 108, 129, 155, 402, 699, 729, 740
FauI	CCCGC	1 cut(s)	290
FblI	GTMKAC	1 cut(s)	327
Fnu4HI	GCNGC	7 cut(s)	367, 370, 373, 397, 512, 780, 783
FokI	GGATG	1 cut(s)	748
FriOI	GRGCYC	1 cut(s)	321
Fsp4HI	GCNGC	7 cut(s)	367, 370, 373, 397, 512, 780, 783
GlaI	GCGC	1 cut(s)	228
GluI	GCNGC	7 cut(s)	367, 370, 373, 397, 512, 780, 783
HaeII	RGCGCY	1 cut(s)	230
HaeIII	GGCC	1 cut(s)	816
HhaI	GCGC	1 cut(s)	229
Hin1I	GRCGYC	1 cut(s)	227
Hin1II	CATG	8 cut(s)	16, 112, 133, 159, 406, 703, 733, 744
Hin6I	GCGC	1 cut(s)	227
HinP1I	GCGC	1 cut(s)	227
HincII	GTYRAC	1 cut(s)	328
HindII	GTYRAC	1 cut(s)	328
HindIII	AAGCTT	1 cut(s)	166
HinfI	GANTC	4 cut(s)	52, 103, 136, 481
HphI	GGTGA	3 cut(s)	131, 678, 718
Hpy166II	GTNNAC	2 cut(s)	220, 328
Hpy188I	TCNGA	4 cut(s)	57, 480, 486, 552
Hpy188III	TCNNGA	1 cut(s)	179
Hpy8I	GTNNAC	2 cut(s)	220, 328
Hpy99I	CGWCG	4 cut(s)	329, 332, 380, 383
HpyAV	CCTTC	2 cut(s)	129, 424
HpyCH4III	ACNGT	2 cut(s)	283, 693
HpyCH4IV	ACGT	1 cut(s)	216
HpyCH4V	TGCA	6 cut(s)	97, 133, 649, 661, 703, 809
HpyF10VI	GCNNNNNNNGC	7 cut(s)	94, 363, 372, 396, 442, 788, 822
HpyF3I	CTNAG	6 cut(s)	56, 293, 419, 521, 570, 668
HpySE526I	ACGT	1 cut(s)	216
Hsp92I	GRCGYC	1 cut(s)	227
Hsp92II	CATG	8 cut(s)	16, 112, 133, 159, 406, 703, 733, 744
HspAI	GCGC	1 cut(s)	227
KasI	GGCGCC	1 cut(s)	226
Kzo9I	GATC	2 cut(s)	181, 885
LmnI	GCTCC	6 cut(s)	316, 362, 433, 450, 466, 790
LpnPI	CCDG	9 cut(s)	192, 204, 305, 482, 529, 541, 625, 801, 835
Lsp1109I	GCAGC	4 cut(s)	384, 523, 766, 769
LweI	GCATC	1 cut(s)	895
MaeII	ACGT	1 cut(s)	216
MalI	GATC	2 cut(s)	183, 887
MbiI	CCGCTC	1 cut(s)	297
MboI	GATC	2 cut(s)	181, 885
MboII	GAAGA	5 cut(s)	263, 313, 395, 424, 765
MhlI	GDGCHC	5 cut(s)	321, 359, 471, 676, 737
MluCI	AATT	4 cut(s)	173, 457, 599, 878
Mly113I	GGCGCC	1 cut(s)	227
MlyI	GAGTC	1 cut(s)	61
MmeI	TCCRAC	2 cut(s)	871, 913
MseI	TTAA	2 cut(s)	462, 575
MslI	CAYNNNNRTG	2 cut(s)	215, 704
MspA1I	CMGCKG	1 cut(s)	514
MwoI	GCNNNNNNNGC	7 cut(s)	94, 363, 372, 396, 442, 788, 822
NarI	GGCGCC	1 cut(s)	227
NdeII	GATC	2 cut(s)	181, 885
NlaIII	CATG	8 cut(s)	16, 112, 133, 159, 406, 703, 733, 744
NlaIV	GGNNCC	2 cut(s)	228, 318
NspI	RCATGY	2 cut(s)	406, 703
PaeR7I	CTCGAG	1 cut(s)	449
PciI	ACATGT	1 cut(s)	402
PcsI	WCGNNNNNNNCGW	1 cut(s)	333
PfeI	GAWTC	3 cut(s)	103, 136, 481
PkrI	GCNGC	7 cut(s)	368, 371, 374, 398, 513, 781, 784
PleI	GAGTC	1 cut(s)	60
PluTI	GGCGCC	1 cut(s)	230
PpsI	GAGTC	1 cut(s)	60
PpuMI	RGGWCCY	1 cut(s)	348
PscI	ACATGT	1 cut(s)	402
Psp5II	RGGWCCY	1 cut(s)	348
PspN4I	GGNNCC	2 cut(s)	228, 318
PspPI	GGNCC	3 cut(s)	348, 815, 833
PspPPI	RGGWCCY	1 cut(s)	348
PspXI	VCTCGAGB	1 cut(s)	449
PstNI	CAGNNNCTG	1 cut(s)	442
PvuII	CAGCTG	1 cut(s)	514
RseI	CAYNNNNRTG	2 cut(s)	215, 704
SalI	GTCGAC	1 cut(s)	326
SaqAI	TTAA	2 cut(s)	462, 575
SatI	GCNGC	7 cut(s)	367, 370, 373, 397, 512, 780, 783
Sau3AI	GATC	2 cut(s)	181, 885
Sau96I	GGNCC	3 cut(s)	348, 815, 833
SchI	GAGTC	1 cut(s)	61
SduI	GDGCHC	5 cut(s)	321, 359, 471, 676, 737
SfaNI	GCATC	1 cut(s)	895
SfoI	GGCGCC	1 cut(s)	228
Sfr274I	CTCGAG	1 cut(s)	449
SgrDI	CGTCGACG	1 cut(s)	326
SinI	GGWCC	2 cut(s)	348, 833
SlaI	CTCGAG	1 cut(s)	449
SmiMI	CAYNNNNRTG	2 cut(s)	215, 704
SmlI	CTYRAG	1 cut(s)	449
SmoI	CTYRAG	1 cut(s)	449
Sse9I	AATT	4 cut(s)	173, 457, 599, 878
SsiI	CCGC	6 cut(s)	297, 366, 369, 396, 836, 912
SspDI	GGCGCC	1 cut(s)	226
TaaI	ACNGT	2 cut(s)	283, 693
TaiI	ACGT	1 cut(s)	219
TaqI	TCGA	8 cut(s)	184, 233, 246, 287, 327, 428, 450, 895
TasI	AATT	4 cut(s)	173, 457, 599, 878
TauI	GCSGC	3 cut(s)	369, 372, 399
TfiI	GAWTC	3 cut(s)	103, 136, 481
Tru1I	TTAA	2 cut(s)	462, 575
Tru9I	TTAA	2 cut(s)	462, 575
TseI	GCWGC	4 cut(s)	372, 511, 779, 782
TspDTI	ATGAA	6 cut(s)	29, 38, 144, 177, 255, 722
VpaK11BI	GGWCC	2 cut(s)	348, 833
XapI	RAATTY	1 cut(s)	457
XceI	RCATGY	2 cut(s)	406, 703
XhoI	CTCGAG	1 cut(s)	449
XmiI	GTMKAC	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.