Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0013963

Physical Location & Seq

Genomic Coordinates Forward (+)

18481040 .. 18483618

Gene Structure 2579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G127300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGGTGAGAAAGATGATGGGTTGGGGTTAGGGTTGAGTTTGAGCTTGGGATGTAAACCCAATGAGAATGAGTCTTCGTTGCGCTTGAATCTCATGGAGAAGCCTTCACAGCCCATGCAAAATCATCAACACAGAACTTCCTGGAATGAAATCTTTCAATTTCCTGATCGAAACCCAGATGCCAGGTCGTGTCTGAGAGGAATCGACGTGAACCAAGCTGCGGATTTTGAAGAGGAAAACGGGGTTTCGTCGCCTAACAGCACGGTGTCGAGCCTGAGCGGGAAGAGGAGCGAGAGAGAGCCCATTGGCGATGAGAATGAGGCTGAGAGGACCTCGTGCTCCCATGGAAGTGACGATGAAGATGGCAATGGTGGCGACCTGTCGAGGAAGAAGCTCAGGCTAACAAAGGAGCAGTCTTTGCTGCTTGAAGACACGTTCAAGGAGCACAACACTCTGAATCCGAGGCAAAAGCAGGCGTTGGCAAAGCAGCTGAACCTAAGACCAAGACAAGTGGAGGTTTGGTTTCAGAACAGGAGGGCAAGGACTAAGTTAAAGCAAACAGAGGTGGATTGTGAGTTGCTAAAGAGATGCTGTGAGAAACTAACAGAAGACAACAGGAGGTTGCAGAAGGAAGTGCAAGAGCTTAGAGCACTCAAGCTTTCACCACAGCTCTACATGCAAATGAGCCCTCCCACAACCCTCACCATGTGCCCTTCATGCGAGCGTGTGGCCGTCTCGTCCTTGTCATCTTCTGCTGCTGCCGCTGCTTCCTCCACATCTCCTGCAAATGGCCAAACCTGCCAAAGTGGTCCGCCCAACGTCCAGCGGCCCATCCCGATCAGCCCATGGGCTACATTGCCGATCCAACGCCGACCACTTGATGCATCCGCACCCAAGTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005911 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009639 GO:0009641 GO:0009719 GO:0009725 GO:0009889 GO:0010033 GO:0010218 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030054 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055044 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ HD-ZIP_N Homeobox

Protein Analysis

301

Amino Acids

33.39

Weight (kDa)

7.53

Isoelectric Point (pI)

60.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60390
fragaria_vesca	FvH4_7g09820 FvH4_7g09820 FvH4_7g09820
malus_domestica	MD02G1216800.v1.1
prunus_persica	Prupe.2G127300_v2.0.a1
pyrus_communis	pycom02g17850
rosa_chinensis	RchiOBHm_Chr1g0346981
rosa_laevigata	RLG00000028766
rosa_multiflora	Rmu_co8350045.1_g000001 Rmu_sc0002705.1_g000018
rosa_roxburghii	Rroxscaffold_4G00308000
rosa_samantha	Rh1AG202800 Rh1BG168800 Rh1CG187500 Rh1DG199500
rosa_wichuraiana	Rw1G016990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	806
AccBSI	CCGCTC	1 cut(s)	279
AciI	CCGC	6 cut(s)	221, 279, 762, 812, 826, 888
AclWI	GGATC	1 cut(s)	856
AcoI	YGGCCR	2 cut(s)	729, 790
AdeI	CACNNNGTG	1 cut(s)	708
AfiI	CCNNNNNNNGG	2 cut(s)	220, 788
AflIII	ACRYGT	1 cut(s)	432
AgsI	TTSAA	5 cut(s)	88, 158, 230, 428, 439
AjiI	CACGTC	1 cut(s)	208
AjnI	CCWGG	2 cut(s)	140, 182
AluBI	AGCT	7 cut(s)	45, 218, 394, 490, 643, 658, 670
AluI	AGCT	7 cut(s)	45, 218, 394, 490, 643, 658, 670
Alw21I	GWGCWC	3 cut(s)	341, 447, 652
Alw26I	GTCTC	1 cut(s)	739
AlwI	GGATC	1 cut(s)	856
AoxI	GGCC	3 cut(s)	729, 790, 827
ApeKI	GCWGC	6 cut(s)	218, 421, 487, 755, 758, 764
ArsI	GACNNNNNNTTYG	2 cut(s)	398, 430
Asp700I	GAANNNNTTC	1 cut(s)	153
AspLEI	GCGC	1 cut(s)	84
AspS9I	GGNCC	3 cut(s)	330, 809, 828
AsuHPI	GGTGA	3 cut(s)	17, 654, 694
AvaII	GGWCC	2 cut(s)	330, 809
BaeGI	GKGCMC	1 cut(s)	713
BalI	TGGCCA	1 cut(s)	792
BanII	GRGCYC	2 cut(s)	303, 689
BauI	CACGAG	1 cut(s)	334
BbsI	GAAGAC	3 cut(s)	66, 435, 615
Bbv12I	GWGCWC	3 cut(s)	341, 447, 652
BbvI	GCAGC	6 cut(s)	205, 408, 499, 742, 745, 751
BccI	CCATC	3 cut(s)	11, 356, 839
BceAI	ACGGC	1 cut(s)	716
BcgI	CGANNNNNNTGC	1 cut(s)	879
BciT130I	CCWGG	2 cut(s)	142, 184
BcoDI	GTCTC	1 cut(s)	739
BfuAI	ACCTGC	1 cut(s)	806
BisI	GCNGC	8 cut(s)	219, 422, 488, 756, 759, 762, 765, 827
BlsI	GCNGC	8 cut(s)	220, 423, 489, 757, 760, 763, 766, 828
Bme1390I	CCNGG	2 cut(s)	142, 184
Bme18I	GGWCC	2 cut(s)	330, 809
BmgBI	CACGTC	1 cut(s)	208
BmgT120I	GGNCC	3 cut(s)	330, 809, 828
BmrFI	CCNGG	2 cut(s)	142, 184
BmsI	GCATC	4 cut(s)	169, 578, 871, 893
BpiI	GAAGAC	3 cut(s)	66, 435, 615
BplI	GAGNNNNNCTC	2 cut(s)	317, 349
Bpu10I	CCTNAGC	2 cut(s)	275, 395
BpuEI	CTTGAG	1 cut(s)	638
BsaJI	CCNNGG	3 cut(s)	343, 461, 845
BsaXI	ACNNNNNCTCC	2 cut(s)	506, 536
Bsc4I	CCNNNNNNNGG	2 cut(s)	220, 788
Bse3DI	GCAATG	2 cut(s)	373, 854
BseBI	CCWGG	2 cut(s)	142, 184
BseDI	CCNNGG	3 cut(s)	343, 461, 845
BseGI	GGATG	3 cut(s)	56, 831, 884
BseLI	CCNNNNNNNGG	2 cut(s)	220, 788
BseMI	GCAATG	2 cut(s)	373, 854
BseMII	CTCAG	4 cut(s)	185, 266, 315, 409
BseRI	GAGGAG	1 cut(s)	301
BseSI	GKGCMC	1 cut(s)	713
BseXI	GCAGC	6 cut(s)	205, 408, 499, 742, 745, 751
BshFI	GGCC	3 cut(s)	731, 792, 829
BsiHKAI	GWGCWC	3 cut(s)	341, 447, 652
BslI	CCNNNNNNNGG	2 cut(s)	220, 788
BsmAI	GTCTC	1 cut(s)	739
BsmBI	CGTCTC	1 cut(s)	739
BsnI	GGCC	3 cut(s)	731, 792, 829
Bsp1286I	GDGCHC	6 cut(s)	303, 341, 447, 652, 689, 713
Bsp143I	GATC	3 cut(s)	166, 837, 861
Bsp19I	CCATGG	2 cut(s)	343, 845
BspACI	CCGC	6 cut(s)	221, 279, 762, 812, 826, 888
BspANI	GGCC	3 cut(s)	731, 792, 829
BspCNI	CTCAG	4 cut(s)	186, 267, 316, 408
BspMI	ACCTGC	1 cut(s)	806
BspPI	GGATC	1 cut(s)	856
BsrBI	CCGCTC	1 cut(s)	279
BsrDI	GCAATG	2 cut(s)	373, 854
BssECI	CCNNGG	3 cut(s)	343, 461, 845
BssMI	GATC	3 cut(s)	166, 837, 861
BssSI	CACGAG	1 cut(s)	334
BssT1I	CCWWGG	2 cut(s)	343, 845
Bst2BI	CACGAG	1 cut(s)	334
Bst2UI	CCWGG	2 cut(s)	142, 184
Bst4CI	ACNGT	1 cut(s)	265
Bst6I	CTCTTC	2 cut(s)	225, 278
BstAPI	GCANNNNNTGC	1 cut(s)	418
BstC8I	GCNNGC	2 cut(s)	474, 722
BstDEI	CTNAG	7 cut(s)	194, 275, 324, 395, 497, 546, 644
BstDSI	CCRYGG	2 cut(s)	343, 845
BstF5I	GGATG	3 cut(s)	56, 831, 884
BstHHI	GCGC	1 cut(s)	84
BstKTI	GATC	3 cut(s)	169, 840, 864
BstMAI	GTCTC	1 cut(s)	739
BstMBI	GATC	3 cut(s)	166, 837, 861
BstMWI	GCNNNNNNNGC	8 cut(s)	109, 372, 418, 676, 717, 761, 764, 798
BstNI	CCWGG	2 cut(s)	142, 184
BstNSI	RCATGY	1 cut(s)	679
BstSCI	CCNGG	2 cut(s)	140, 182
BstSLI	GKGCMC	1 cut(s)	713
BstV1I	GCAGC	6 cut(s)	205, 408, 499, 742, 745, 751
BstV2I	GAAGAC	3 cut(s)	66, 435, 615
BsuRI	GGCC	3 cut(s)	731, 792, 829
BtgI	CCRYGG	2 cut(s)	343, 845
BtgZI	GCGATG	1 cut(s)	324
BtrI	CACGTC	1 cut(s)	208
BtsCI	GGATG	3 cut(s)	56, 831, 884
BveI	ACCTGC	1 cut(s)	806
Cac8I	GCNNGC	2 cut(s)	474, 722
CfoI	GCGC	1 cut(s)	84
Cfr13I	GGNCC	3 cut(s)	330, 809, 828
CspCI	CAANNNNNGTGG	2 cut(s)	492, 527
CviAII	CATG	7 cut(s)	94, 115, 344, 676, 706, 717, 846
DdeI	CTNAG	7 cut(s)	194, 275, 324, 395, 497, 546, 644
DpnI	GATC	3 cut(s)	168, 839, 863
DpnII	GATC	3 cut(s)	166, 837, 861
DraIII	CACNNNGTG	1 cut(s)	708
EaeI	YGGCCR	2 cut(s)	729, 790
Eam1104I	CTCTTC	2 cut(s)	225, 278
EarI	CTCTTC	2 cut(s)	225, 278
EciI	GGCGGA	1 cut(s)	801
Eco130I	CCWWGG	2 cut(s)	343, 845
Eco24I	GRGCYC	2 cut(s)	303, 689
Eco47I	GGWCC	2 cut(s)	330, 809
EcoO109I	RGGNCCY	1 cut(s)	330
EcoRII	CCWGG	2 cut(s)	140, 182
EcoT14I	CCWWGG	2 cut(s)	343, 845
EcoT22I	ATGCAT	1 cut(s)	886
EcoT38I	GRGCYC	2 cut(s)	303, 689
ErhI	CCWWGG	2 cut(s)	343, 845
Esp3I	CGTCTC	1 cut(s)	739
FaeI	CATG	7 cut(s)	97, 118, 347, 679, 709, 720, 849
FaiI	YATR	7 cut(s)	95, 116, 345, 677, 707, 718, 847
FatI	CATG	7 cut(s)	93, 114, 343, 675, 705, 716, 845
FauI	CCCGC	1 cut(s)	272
Fnu4HI	GCNGC	8 cut(s)	219, 422, 488, 756, 759, 762, 765, 827
FokI	GGATG	3 cut(s)	63, 818, 871
FriOI	GRGCYC	2 cut(s)	303, 689
Fsp4HI	GCNGC	8 cut(s)	219, 422, 488, 756, 759, 762, 765, 827
GlaI	GCGC	1 cut(s)	83
GluI	GCNGC	8 cut(s)	219, 422, 488, 756, 759, 762, 765, 827
HaeIII	GGCC	3 cut(s)	731, 792, 829
HhaI	GCGC	1 cut(s)	84
Hin1II	CATG	7 cut(s)	97, 118, 347, 679, 709, 720, 849
Hin6I	GCGC	1 cut(s)	82
HinP1I	GCGC	1 cut(s)	82
HindIII	AAGCTT	1 cut(s)	656
HinfI	GANTC	4 cut(s)	71, 88, 201, 457
HphI	GGTGA	3 cut(s)	17, 654, 694
Hpy166II	GTNNAC	2 cut(s)	56, 211
Hpy188I	TCNGA	4 cut(s)	195, 456, 462, 528
Hpy188III	TCNNGA	2 cut(s)	164, 835
Hpy8I	GTNNAC	2 cut(s)	56, 211
Hpy99I	CGWCG	2 cut(s)	209, 253
HpyAV	CCTTC	3 cut(s)	114, 622, 723
HpyCH4III	ACNGT	1 cut(s)	265
HpyCH4IV	ACGT	3 cut(s)	207, 434, 819
HpyCH4V	TGCA	6 cut(s)	118, 625, 637, 679, 785, 884
HpyF10VI	GCNNNNNNNGC	8 cut(s)	109, 372, 418, 676, 717, 761, 764, 798
HpyF3I	CTNAG	7 cut(s)	194, 275, 324, 395, 497, 546, 644
HpySE526I	ACGT	3 cut(s)	207, 434, 819
Hsp92II	CATG	7 cut(s)	97, 118, 347, 679, 709, 720, 849
HspAI	GCGC	1 cut(s)	82
Kzo9I	GATC	3 cut(s)	166, 837, 861
LmnI	GCTCC	4 cut(s)	288, 344, 409, 442
Lsp1109I	GCAGC	6 cut(s)	205, 408, 499, 742, 745, 751
LweI	GCATC	4 cut(s)	169, 578, 871, 893
MaeII	ACGT	3 cut(s)	207, 434, 819
MaeIII	GTNAC	1 cut(s)	350
MalI	GATC	3 cut(s)	168, 839, 863
MbiI	CCGCTC	1 cut(s)	279
MboI	GATC	3 cut(s)	166, 837, 861
MboII	GAAGA	8 cut(s)	66, 242, 295, 371, 400, 440, 620, 741
MhlI	GDGCHC	6 cut(s)	303, 341, 447, 652, 689, 713
MlsI	TGGCCA	1 cut(s)	792
MluCI	AATT	1 cut(s)	158
MluNI	TGGCCA	1 cut(s)	792
MlyI	GAGTC	1 cut(s)	80
MmeI	TCCRAC	1 cut(s)	889
Mox20I	TGGCCA	1 cut(s)	792
Mph1103I	ATGCAT	1 cut(s)	886
MroXI	GAANNNNTTC	1 cut(s)	153
MscI	TGGCCA	1 cut(s)	792
MseI	TTAA	1 cut(s)	551
MslI	CAYNNNNRTG	2 cut(s)	348, 680
Msp20I	TGGCCA	1 cut(s)	792
MspA1I	CMGCKG	3 cut(s)	490, 764, 826
MspR9I	CCNGG	2 cut(s)	142, 184
MvaI	CCWGG	2 cut(s)	142, 184
MwoI	GCNNNNNNNGC	8 cut(s)	109, 372, 418, 676, 717, 761, 764, 798
NcoI	CCATGG	2 cut(s)	343, 845
NdeII	GATC	3 cut(s)	166, 837, 861
NlaIII	CATG	7 cut(s)	97, 118, 347, 679, 709, 720, 849
NmuCI	GTSAC	1 cut(s)	350
NsiI	ATGCAT	1 cut(s)	886
NspI	RCATGY	1 cut(s)	679
PdmI	GAANNNNTTC	1 cut(s)	153
PfeI	GAWTC	3 cut(s)	88, 201, 457
PfoI	TCCNGGA	1 cut(s)	140
PkrI	GCNGC	8 cut(s)	220, 423, 489, 757, 760, 763, 766, 828
PleI	GAGTC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	79
PpuMI	RGGWCCY	1 cut(s)	330
Psp5II	RGGWCCY	1 cut(s)	330
Psp6I	CCWGG	2 cut(s)	140, 182
PspGI	CCWGG	2 cut(s)	140, 182
PspPI	GGNCC	3 cut(s)	330, 809, 828
PspPPI	RGGWCCY	1 cut(s)	330
PvuII	CAGCTG	1 cut(s)	490
RseI	CAYNNNNRTG	2 cut(s)	348, 680
SaqAI	TTAA	1 cut(s)	551
SatI	GCNGC	8 cut(s)	219, 422, 488, 756, 759, 762, 765, 827
Sau3AI	GATC	3 cut(s)	166, 837, 861
Sau96I	GGNCC	3 cut(s)	330, 809, 828
SchI	GAGTC	1 cut(s)	80
ScrFI	CCNGG	2 cut(s)	142, 184
SduI	GDGCHC	6 cut(s)	303, 341, 447, 652, 689, 713
SfaNI	GCATC	4 cut(s)	169, 578, 871, 893
SinI	GGWCC	2 cut(s)	330, 809
SmiMI	CAYNNNNRTG	2 cut(s)	348, 680
SmlI	CTYRAG	1 cut(s)	653
SmoI	CTYRAG	1 cut(s)	653
Sse9I	AATT	1 cut(s)	158
SsiI	CCGC	6 cut(s)	221, 279, 762, 812, 826, 888
StyD4I	CCNGG	2 cut(s)	140, 182
StyI	CCWWGG	2 cut(s)	343, 845
TaaI	ACNGT	1 cut(s)	265
TaiI	ACGT	3 cut(s)	210, 437, 822
TaqI	TCGA	4 cut(s)	169, 204, 269, 383
TasI	AATT	1 cut(s)	158
TauI	GCSGC	2 cut(s)	764, 829
TfiI	GAWTC	3 cut(s)	88, 201, 457
Tru1I	TTAA	1 cut(s)	551
Tru9I	TTAA	1 cut(s)	551
TseFI	GTSAC	1 cut(s)	350
TseI	GCWGC	6 cut(s)	218, 421, 487, 755, 758, 764
Tsp45I	GTSAC	1 cut(s)	350
TspDTI	ATGAA	3 cut(s)	162, 372, 705
VpaK11BI	GGWCC	2 cut(s)	330, 809
XceI	RCATGY	1 cut(s)	679
XmnI	GAANNNNTTC	1 cut(s)	153
Zsp2I	ATGCAT	1 cut(s)	886

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.