Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0013963

Physical Location & Seq

Genomic Coordinates Reverse (-)

24771237 .. 24773810

Gene Structure 2574 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1216800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGAGTGAGAAAATGAAAGATATGAAAGGGTTGGGGTTGGGGTTGGGATCGAGTCTGAGCTTGGGATTGAAACCCAATGAGAGTGAGCCTTGTTTGCAGTTGAATCTCATGGAGAAGCCTTCACACCCCATGCAGAATCACCCTCACAGAACTTCATGGAATGAAATCTTCCAATTTCCTGATCGAAACCCAAATACGAGGTCGTTTATCGGAGGAATAGACGTGAACGAGGCGCCGTCGATGGCGGATTTCGAGGAAGAAAACGGGATTTCATCGCCGAACAGCACGGTGTCGAGCCTGAGCGGGAAGAGGAGCGATAGGGAGCCCATCGTCGACGAGAACGAGGGCGAGAGGACCTCGTGCTCCCACGGCGGCGGCAGCGACGACGAAGACGGCTACGGCGGCGACATGTCAAGGAAGAAGCTGAGGCTGTCGAAGGAGCAGTCTCTGCTGCTCGAGGAGACGTTTAAGGAGCACAACACTCTGAATACGAAGCAGAAGCAGGAGTTGGCAAAGCAGCTGAACCTAAGAGCGAGACAAGTGGAGGTCTGGTTTCAGAACAGGAGGGCAAGGACTAAGTTAAAGCAAACAGAGGTGGATTGTGAATTACTAAAGAGGTGCTGTGAGAAACTAACAGAGGACAACAGGAGGTTGCACAAGGAAGTGCAAGAGCTTAGAGCACTCAAACTCTCACCACACTTCTACATGCAGATGAACCCTCCCACAACCCTCACCATGTGCCCGTCATGCCAGCGTGTAGCCGTCTCATCCTCGTCATCTTCTGCTGCTGTTCCTGCTTCCTCCACAACTCTTGCAAATGCCCCGACCCGCCAACATGGTCCGCCTAATATCCAACGCCCTATCCCCATCAGCCCGTGGGCAAAATTGCCGATCCAACATCCAACGCTTGATGCTTCCGCCCCTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005911 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009639 GO:0009641 GO:0009719 GO:0009725 GO:0009889 GO:0010033 GO:0010218 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030054 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055044 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ HD-ZIP_N Homeobox

Protein Analysis

310

Amino Acids

34.57

Weight (kDa)

8.13

Isoelectric Point (pI)

59.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HD-ZIP_N	PF04618	14 - 108	2.2e-26	HD-ZIP protein N terminus
Homeodomain	PF00046	139 - 193	2.8e-15	Homeodomain
HALZ	PF02183	195 - 229	9.8e-11	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60390
fragaria_vesca	FvH4_7g09820 FvH4_7g09820 FvH4_7g09820
malus_domestica	MD02G1216800.v1.1
prunus_persica	Prupe.2G127300_v2.0.a1
pyrus_communis	pycom02g17850
rosa_chinensis	RchiOBHm_Chr1g0346981
rosa_laevigata	RLG00000028766
rosa_multiflora	Rmu_co8350045.1_g000001 Rmu_sc0002705.1_g000018
rosa_roxburghii	Rroxscaffold_4G00308000
rosa_samantha	Rh1AG202800 Rh1BG168800 Rh1CG187500 Rh1DG199500
rosa_wichuraiana	Rw1G016990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	232
AccBSI	CCGCTC	1 cut(s)	303
AccI	GTMKAC	1 cut(s)	333
AciI	CCGC	8 cut(s)	245, 303, 372, 375, 402, 829, 842, 918
AclWI	GGATC	2 cut(s)	55, 886
AcyI	GRCGYC	1 cut(s)	233
AdeI	CACNNNGTG	1 cut(s)	738
AflIII	ACRYGT	1 cut(s)	408
AgsI	TTSAA	2 cut(s)	70, 103
AjiI	CACGTC	1 cut(s)	223
AjuI	GAANNNNNNNTTGG	2 cut(s)	491, 523
AluBI	AGCT	4 cut(s)	60, 424, 520, 673
AluI	AGCT	4 cut(s)	60, 424, 520, 673
Alw21I	GWGCWC	3 cut(s)	365, 477, 682
Alw26I	GTCTC	4 cut(s)	450, 455, 529, 769
AlwI	GGATC	2 cut(s)	55, 886
AlwNI	CAGNNNCTG	1 cut(s)	448
Ama87I	CYCGRG	1 cut(s)	455
ApeKI	GCWGC	4 cut(s)	378, 451, 517, 785
ArsI	GACNNNNNNTTYG	4 cut(s)	185, 217, 428, 460
AspLEI	GCGC	1 cut(s)	235
AspS9I	GGNCC	2 cut(s)	354, 839
AsuHPI	GGTGA	3 cut(s)	131, 684, 724
AvaI	CYCGRG	1 cut(s)	455
AvaII	GGWCC	2 cut(s)	354, 839
BaeGI	GKGCMC	1 cut(s)	743
BanI	GGYRCC	1 cut(s)	232
BanII	GRGCYC	1 cut(s)	327
BauI	CACGAG	1 cut(s)	358
BbsI	GAAGAC	1 cut(s)	396
Bbv12I	GWGCWC	3 cut(s)	365, 477, 682
BbvCI	CCTCAGC	1 cut(s)	425
BbvI	GCAGC	4 cut(s)	390, 438, 529, 772
BccI	CCATC	3 cut(s)	235, 335, 875
BceAI	ACGGC	5 cut(s)	220, 385, 409, 415, 746
BcoDI	GTCTC	4 cut(s)	450, 455, 529, 769
BfoI	RGCGCY	1 cut(s)	236
BisI	GCNGC	7 cut(s)	373, 376, 379, 403, 452, 518, 786
BlsI	GCNGC	7 cut(s)	374, 377, 380, 404, 453, 519, 787
Bme18I	GGWCC	2 cut(s)	354, 839
BmeT110I	CYCGRG	1 cut(s)	455
BmgBI	CACGTC	1 cut(s)	223
BmgT120I	GGNCC	2 cut(s)	354, 839
BmiI	GGNNCC	2 cut(s)	234, 324
BmsI	GCATC	1 cut(s)	901
BpiI	GAAGAC	1 cut(s)	396
BplI	GAGNNNNNCTC	2 cut(s)	341, 373
Bpu10I	CCTNAGC	2 cut(s)	299, 425
BsaHI	GRCGYC	1 cut(s)	233
BsaJI	CCNNGG	2 cut(s)	367, 875
BsaXI	ACNNNNNCTCC	2 cut(s)	536, 566
BseDI	CCNNGG	2 cut(s)	367, 875
BseGI	GGATG	2 cut(s)	767, 898
BseMII	CTCAG	3 cut(s)	47, 290, 416
BseRI	GAGGAG	2 cut(s)	325, 473
BseSI	GKGCMC	1 cut(s)	743
BseXI	GCAGC	4 cut(s)	390, 438, 529, 772
BshNI	GGYRCC	1 cut(s)	232
BsiHKAI	GWGCWC	3 cut(s)	365, 477, 682
BsiHKCI	CYCGRG	1 cut(s)	455
BsmAI	GTCTC	4 cut(s)	450, 455, 529, 769
BsmBI	CGTCTC	2 cut(s)	455, 769
BsoBI	CYCGRG	1 cut(s)	455
Bsp1286I	GDGCHC	5 cut(s)	327, 365, 477, 682, 743
Bsp143I	GATC	3 cut(s)	47, 181, 891
BspACI	CCGC	8 cut(s)	245, 303, 372, 375, 402, 829, 842, 918
BspCNI	CTCAG	3 cut(s)	48, 291, 417
BspLI	GGNNCC	2 cut(s)	234, 324
BspPI	GGATC	2 cut(s)	55, 886
BspT107I	GGYRCC	1 cut(s)	232
BsrBI	CCGCTC	1 cut(s)	303
BssECI	CCNNGG	2 cut(s)	367, 875
BssMI	GATC	3 cut(s)	47, 181, 891
BssNI	GRCGYC	1 cut(s)	233
BssSI	CACGAG	1 cut(s)	358
Bst2BI	CACGAG	1 cut(s)	358
Bst4CI	ACNGT	1 cut(s)	289
Bst6I	CTCTTC	1 cut(s)	302
BstACI	GRCGYC	1 cut(s)	233
BstAPI	GCANNNNNTGC	1 cut(s)	448
BstC8I	GCNNGC	1 cut(s)	752
BstDEI	CTNAG	6 cut(s)	56, 299, 425, 527, 576, 674
BstDSI	CCRYGG	2 cut(s)	367, 875
BstF5I	GGATG	2 cut(s)	767, 898
BstH2I	RGCGCY	1 cut(s)	236
BstHHI	GCGC	1 cut(s)	235
BstKTI	GATC	3 cut(s)	50, 184, 894
BstMAI	GTCTC	4 cut(s)	450, 455, 529, 769
BstMBI	GATC	3 cut(s)	47, 181, 891
BstMWI	GCNNNNNNNGC	7 cut(s)	94, 369, 378, 402, 448, 747, 794
BstNSI	RCATGY	2 cut(s)	412, 709
BstSLI	GKGCMC	1 cut(s)	743
BstV1I	GCAGC	4 cut(s)	390, 438, 529, 772
BstV2I	GAAGAC	1 cut(s)	396
BtgI	CCRYGG	2 cut(s)	367, 875
BtgZI	GCGATG	1 cut(s)	258
BtrI	CACGTC	1 cut(s)	223
BtsCI	GGATG	2 cut(s)	767, 898
Cac8I	GCNNGC	1 cut(s)	752
CaiI	CAGNNNCTG	1 cut(s)	448
CfoI	GCGC	1 cut(s)	235
Cfr13I	GGNCC	2 cut(s)	354, 839
CspCI	CAANNNNNGTGG	2 cut(s)	793, 828
CviAII	CATG	8 cut(s)	109, 130, 156, 409, 706, 736, 747, 836
DdeI	CTNAG	6 cut(s)	56, 299, 425, 527, 576, 674
DinI	GGCGCC	1 cut(s)	234
DpnI	GATC	3 cut(s)	49, 183, 893
DpnII	GATC	3 cut(s)	47, 181, 891
DraIII	CACNNNGTG	1 cut(s)	738
Eam1104I	CTCTTC	1 cut(s)	302
EarI	CTCTTC	1 cut(s)	302
EciI	GGCGGA	3 cut(s)	260, 831, 907
Eco24I	GRGCYC	1 cut(s)	327
Eco47I	GGWCC	2 cut(s)	354, 839
Eco88I	CYCGRG	1 cut(s)	455
EcoO109I	RGGNCCY	1 cut(s)	354
EcoT38I	GRGCYC	1 cut(s)	327
EgeI	GGCGCC	1 cut(s)	234
EheI	GGCGCC	1 cut(s)	234
Esp3I	CGTCTC	2 cut(s)	455, 769
FaeI	CATG	8 cut(s)	112, 133, 159, 412, 709, 739, 750, 839
FaiI	YATR	9 cut(s)	23, 110, 131, 157, 410, 707, 737, 748, 837
FatI	CATG	8 cut(s)	108, 129, 155, 408, 705, 735, 746, 835
FauI	CCCGC	2 cut(s)	296, 836
FblI	GTMKAC	1 cut(s)	333
Fnu4HI	GCNGC	7 cut(s)	373, 376, 379, 403, 452, 518, 786
FokI	GGATG	2 cut(s)	754, 885
FriOI	GRGCYC	1 cut(s)	327
Fsp4HI	GCNGC	7 cut(s)	373, 376, 379, 403, 452, 518, 786
GlaI	GCGC	1 cut(s)	234
GluI	GCNGC	7 cut(s)	373, 376, 379, 403, 452, 518, 786
HaeII	RGCGCY	1 cut(s)	236
HhaI	GCGC	1 cut(s)	235
Hin1I	GRCGYC	1 cut(s)	233
Hin1II	CATG	8 cut(s)	112, 133, 159, 412, 709, 739, 750, 839
Hin6I	GCGC	1 cut(s)	233
HinP1I	GCGC	1 cut(s)	233
HincII	GTYRAC	1 cut(s)	334
HindII	GTYRAC	1 cut(s)	334
HinfI	GANTC	3 cut(s)	52, 103, 136
HphI	GGTGA	3 cut(s)	131, 684, 724
Hpy166II	GTNNAC	2 cut(s)	226, 334
Hpy188I	TCNGA	4 cut(s)	57, 212, 486, 558
Hpy188III	TCNNGA	1 cut(s)	179
Hpy8I	GTNNAC	2 cut(s)	226, 334
Hpy99I	CGWCG	5 cut(s)	241, 335, 338, 386, 389
HpyAV	CCTTC	2 cut(s)	129, 430
HpyCH4III	ACNGT	1 cut(s)	289
HpyCH4IV	ACGT	2 cut(s)	222, 464
HpyCH4V	TGCA	6 cut(s)	97, 133, 655, 667, 709, 815
HpyF10VI	GCNNNNNNNGC	7 cut(s)	94, 369, 378, 402, 448, 747, 794
HpyF3I	CTNAG	6 cut(s)	56, 299, 425, 527, 576, 674
HpySE526I	ACGT	2 cut(s)	222, 464
Hsp92I	GRCGYC	1 cut(s)	233
Hsp92II	CATG	8 cut(s)	112, 133, 159, 412, 709, 739, 750, 839
HspAI	GCGC	1 cut(s)	233
KasI	GGCGCC	1 cut(s)	232
Kzo9I	GATC	3 cut(s)	47, 181, 891
LmnI	GCTCC	5 cut(s)	312, 322, 368, 439, 472
LpnPI	CCDG	8 cut(s)	192, 311, 488, 535, 547, 631, 764, 807
Lsp1109I	GCAGC	4 cut(s)	390, 438, 529, 772
LweI	GCATC	1 cut(s)	901
MaeII	ACGT	2 cut(s)	222, 464
MalI	GATC	3 cut(s)	49, 183, 893
MbiI	CCGCTC	1 cut(s)	303
MboI	GATC	3 cut(s)	47, 181, 891
MboII	GAAGA	6 cut(s)	160, 269, 319, 401, 430, 771
MhlI	GDGCHC	5 cut(s)	327, 365, 477, 682, 743
MluCI	AATT	3 cut(s)	173, 605, 884
Mly113I	GGCGCC	1 cut(s)	233
MlyI	GAGTC	1 cut(s)	61
MmeI	TCCRAC	3 cut(s)	877, 919, 926
MseI	TTAA	2 cut(s)	468, 581
MslI	CAYNNNNRTG	1 cut(s)	710
MspA1I	CMGCKG	1 cut(s)	520
MwoI	GCNNNNNNNGC	7 cut(s)	94, 369, 378, 402, 448, 747, 794
NarI	GGCGCC	1 cut(s)	233
NdeII	GATC	3 cut(s)	47, 181, 891
NlaIII	CATG	8 cut(s)	112, 133, 159, 412, 709, 739, 750, 839
NlaIV	GGNNCC	2 cut(s)	234, 324
NspI	RCATGY	2 cut(s)	412, 709
PaeR7I	CTCGAG	1 cut(s)	455
PciI	ACATGT	1 cut(s)	408
PcsI	WCGNNNNNNNCGW	1 cut(s)	339
PfeI	GAWTC	2 cut(s)	103, 136
PkrI	GCNGC	7 cut(s)	374, 377, 380, 404, 453, 519, 787
PleI	GAGTC	1 cut(s)	60
PluTI	GGCGCC	1 cut(s)	236
PpsI	GAGTC	1 cut(s)	60
PpuMI	RGGWCCY	1 cut(s)	354
PscI	ACATGT	1 cut(s)	408
Psp5II	RGGWCCY	1 cut(s)	354
PspN4I	GGNNCC	2 cut(s)	234, 324
PspPI	GGNCC	2 cut(s)	354, 839
PspPPI	RGGWCCY	1 cut(s)	354
PspXI	VCTCGAGB	1 cut(s)	455
PstNI	CAGNNNCTG	1 cut(s)	448
PvuII	CAGCTG	1 cut(s)	520
RseI	CAYNNNNRTG	1 cut(s)	710
SalI	GTCGAC	1 cut(s)	332
SaqAI	TTAA	2 cut(s)	468, 581
SatI	GCNGC	7 cut(s)	373, 376, 379, 403, 452, 518, 786
Sau3AI	GATC	3 cut(s)	47, 181, 891
Sau96I	GGNCC	2 cut(s)	354, 839
SchI	GAGTC	1 cut(s)	61
SduI	GDGCHC	5 cut(s)	327, 365, 477, 682, 743
SfaNI	GCATC	1 cut(s)	901
SfoI	GGCGCC	1 cut(s)	234
Sfr274I	CTCGAG	1 cut(s)	455
SgrDI	CGTCGACG	1 cut(s)	332
SinI	GGWCC	2 cut(s)	354, 839
SlaI	CTCGAG	1 cut(s)	455
SmiMI	CAYNNNNRTG	1 cut(s)	710
SmlI	CTYRAG	1 cut(s)	455
SmoI	CTYRAG	1 cut(s)	455
Sse9I	AATT	3 cut(s)	173, 605, 884
SsiI	CCGC	8 cut(s)	245, 303, 372, 375, 402, 829, 842, 918
SspDI	GGCGCC	1 cut(s)	232
TaaI	ACNGT	1 cut(s)	289
TaiI	ACGT	2 cut(s)	225, 467
TaqI	TCGA	9 cut(s)	50, 184, 239, 252, 293, 333, 434, 456, 925
TasI	AATT	3 cut(s)	173, 605, 884
TauI	GCSGC	3 cut(s)	375, 378, 405
TfiI	GAWTC	2 cut(s)	103, 136
Tru1I	TTAA	2 cut(s)	468, 581
Tru9I	TTAA	2 cut(s)	468, 581
TseI	GCWGC	4 cut(s)	378, 451, 517, 785
TspDTI	ATGAA	6 cut(s)	29, 38, 144, 177, 261, 728
VpaK11BI	GGWCC	2 cut(s)	354, 839
XceI	RCATGY	2 cut(s)	412, 709
XhoI	CTCGAG	1 cut(s)	455
XmiI	GTMKAC	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.