Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0013963

Physical Location & Seq

Genomic Coordinates Forward (+)

27004005 .. 27005438

Gene Structure 1434 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG168800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGCAGAATCCAGAAACTAATCATCAACGAGTTTTTGGGATTTTTGGATTCACTGATCGAAATGCGACGTCGTTTCGGCGAGGAATCGACGTGAACCAGGCGGCGGTGGGGGATTACGAGGACGAAAACGGCGTGTCGTCTCCGAACAGCACGGTGTCGAGCCTGAGCGGGAAGCGTAGCGAGAGAGGCGAAGACAACGAGGCGGAGAGGACTTCGTGCTCGCTCGGCGGAAGCGACGATGAGGACGGCATTGGCGGCGGCGACACGTCGAAGAAGAAGGTCCGCCTCACCAAGGAGCAGTCTCTGCTGCTCGAGGACATGTTCAAGGAGCACCACACTCTCAACACGGTTAGTGTCAATTCGAGGCAAAAGCAGGAATTGGCACAGAAGTTGAACCTGAGCGCAAGACAAGTGGAGGTGTGGTTTCAGAACCGGAGGGCAAGGACTAAGTTGAAGCAAACAGAGGTGGATTGTGATCAACTAAGGAAGTGCTGTGAGAATCTAACAGAAGAGAACAGGAGGTTGCAGAAAGAAGTGCAAGAGCTGAGGGCACTCAAGCTCTCGCCACAGTTCTACATGCAAATGAACCCTCCCACAACTCTCACCATGTGCCCTTCATGCCAATGTGTGGGTGTCTCATCCTCATCTTCATCTTCTGCTAGTGCTACTACTGCTTCCTCCACAGTTCCGGCAACCAGCCCAACTGGCCACCCAGGGAAGGCAACTATCCATCGGCCTGTTCCAATCAGCCCGTGGGCCACATTGCCGATCCCACAGCATCGACCAGTTGATGCACCCGCACCTGCATCTCGGTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005911 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009639 GO:0009641 GO:0009719 GO:0009725 GO:0009889 GO:0010033 GO:0010218 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030054 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055044 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ HD-ZIP_N Homeobox

Protein Analysis

272

Amino Acids

29.89

Weight (kDa)

8.16

Isoelectric Point (pI)

58.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HD-ZIP_N	PF04618	21 - 62	1.5e-14	HD-ZIP protein N terminus
Homeodomain	PF00046	91 - 150	2.4e-14	Homeodomain
HALZ	PF02183	152 - 186	1.4e-10	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60390
fragaria_vesca	FvH4_7g09820 FvH4_7g09820 FvH4_7g09820
malus_domestica	MD02G1216800.v1.1
prunus_persica	Prupe.2G127300_v2.0.a1
pyrus_communis	pycom02g17850
rosa_chinensis	RchiOBHm_Chr1g0346981
rosa_laevigata	RLG00000028766
rosa_multiflora	Rmu_co8350045.1_g000001 Rmu_sc0002705.1_g000018
rosa_roxburghii	Rroxscaffold_4G00308000
rosa_samantha	Rh1AG202800 Rh1BG168800 Rh1CG187500 Rh1DG199500
rosa_wichuraiana	Rw1G016990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	811
AatII	GACGTC	1 cut(s)	71
Acc36I	ACCTGC	1 cut(s)	811
AccB7I	CCANNNNNTGG	1 cut(s)	628
AccBSI	CCGCTC	1 cut(s)	168
AciI	CCGC	9 cut(s)	101, 104, 168, 203, 228, 255, 258, 283, 798
AclWI	GGATC	1 cut(s)	763
AcoI	YGGCCR	1 cut(s)	706
AcyI	GRCGYC	1 cut(s)	68
AdeI	CACNNNGTG	1 cut(s)	609
AfiI	CCNNNNNNNGG	4 cut(s)	103, 292, 628, 718
AflIII	ACRYGT	2 cut(s)	264, 318
AgsI	TTSAA	3 cut(s)	325, 394, 454
AjiI	CACGTC	2 cut(s)	91, 267
AjnI	CCWGG	2 cut(s)	96, 712
AluBI	AGCT	2 cut(s)	544, 559
AluI	AGCT	2 cut(s)	544, 559
Alw21I	GWGCWC	2 cut(s)	221, 333
Alw26I	GTCTC	3 cut(s)	144, 306, 640
AlwI	GGATC	1 cut(s)	763
AlwNI	CAGNNNCTG	1 cut(s)	304
Ama87I	CYCGRG	1 cut(s)	311
AoxI	GGCC	3 cut(s)	706, 734, 756
ApeKI	GCWGC	1 cut(s)	307
AspLEI	GCGC	1 cut(s)	404
AspS9I	GGNCC	2 cut(s)	280, 756
AsuHPI	GGTGA	2 cut(s)	280, 595
AvaI	CYCGRG	1 cut(s)	311
AvaII	GGWCC	1 cut(s)	280
BaeGI	GKGCMC	2 cut(s)	553, 614
BalI	TGGCCA	1 cut(s)	708
BbsI	GAAGAC	1 cut(s)	198
Bbv12I	GWGCWC	2 cut(s)	221, 333
BbvCI	CCTCAGC	1 cut(s)	545
BbvI	GCAGC	1 cut(s)	294
BccI	CCATC	1 cut(s)	738
BceAI	ACGGC	2 cut(s)	145, 262
BcgI	CGANNNNNNTGC	1 cut(s)	795
BciT130I	CCWGG	2 cut(s)	98, 714
BclI	TGATCA	1 cut(s)	475
BcoDI	GTCTC	3 cut(s)	144, 306, 640
BfaI	CTAG	1 cut(s)	660
BfuAI	ACCTGC	1 cut(s)	811
BglI	GCCNNNNNGGC	1 cut(s)	705
BisI	GCNGC	4 cut(s)	102, 256, 259, 308
BlsI	GCNGC	4 cut(s)	103, 257, 260, 309
Bme1390I	CCNGG	2 cut(s)	98, 714
Bme18I	GGWCC	1 cut(s)	280
BmeT110I	CYCGRG	1 cut(s)	311
BmgBI	CACGTC	2 cut(s)	91, 267
BmgT120I	GGNCC	2 cut(s)	280, 756
BmrFI	CCNGG	2 cut(s)	98, 714
BmsI	GCATC	3 cut(s)	781, 787, 815
BpiI	GAAGAC	1 cut(s)	198
Bpu10I	CCTNAGC	3 cut(s)	164, 398, 545
BpuEI	CTTGAG	1 cut(s)	539
BsaBI	GATNNNNATC	1 cut(s)	474
BsaHI	GRCGYC	1 cut(s)	68
BsaJI	CCNNGG	4 cut(s)	291, 712, 713, 752
BsaWI	WCCGGW	1 cut(s)	432
BsaXI	ACNNNNNCTCC	2 cut(s)	407, 437
Bsc4I	CCNNNNNNNGG	4 cut(s)	103, 292, 628, 718
Bse1I	ACTGG	2 cut(s)	709, 785
Bse3DI	GCAATG	1 cut(s)	761
Bse8I	GATNNNNATC	1 cut(s)	474
BseBI	CCWGG	2 cut(s)	98, 714
BseDI	CCNNGG	4 cut(s)	291, 712, 713, 752
BseGI	GGATG	1 cut(s)	638
BseJI	GATNNNNATC	1 cut(s)	474
BseLI	CCNNNNNNNGG	4 cut(s)	103, 292, 628, 718
BseMI	GCAATG	1 cut(s)	761
BseMII	CTCAG	3 cut(s)	155, 389, 536
BseNI	ACTGG	2 cut(s)	709, 785
BseSI	GKGCMC	2 cut(s)	553, 614
BseXI	GCAGC	1 cut(s)	294
Bsh1285I	CGRYCG	1 cut(s)	815
BshFI	GGCC	3 cut(s)	708, 736, 758
BsiEI	CGRYCG	1 cut(s)	815
BsiHKAI	GWGCWC	2 cut(s)	221, 333
BsiHKCI	CYCGRG	1 cut(s)	311
BsiSI	CCGG	2 cut(s)	433, 689
BslI	CCNNNNNNNGG	4 cut(s)	103, 292, 628, 718
BsmAI	GTCTC	3 cut(s)	144, 306, 640
BsmBI	CGTCTC	1 cut(s)	144
BsnI	GGCC	3 cut(s)	708, 736, 758
BsoBI	CYCGRG	1 cut(s)	311
Bsp1286I	GDGCHC	4 cut(s)	221, 333, 553, 614
Bsp143I	GATC	3 cut(s)	55, 475, 768
BspACI	CCGC	9 cut(s)	101, 104, 168, 203, 228, 255, 258, 283, 798
BspANI	GGCC	3 cut(s)	708, 736, 758
BspCNI	CTCAG	3 cut(s)	156, 390, 537
BspMI	ACCTGC	1 cut(s)	811
BspPI	GGATC	1 cut(s)	763
BsrBI	CCGCTC	1 cut(s)	168
BsrDI	GCAATG	1 cut(s)	761
BsrI	ACTGG	2 cut(s)	709, 785
BssECI	CCNNGG	4 cut(s)	291, 712, 713, 752
BssMI	GATC	3 cut(s)	55, 475, 768
BssNI	GRCGYC	1 cut(s)	68
BssT1I	CCWWGG	1 cut(s)	291
Bst2UI	CCWGG	2 cut(s)	98, 714
Bst4CI	ACNGT	4 cut(s)	154, 349, 570, 685
Bst6I	CTCTTC	1 cut(s)	504
BstACI	GRCGYC	1 cut(s)	68
BstAPI	GCANNNNNTGC	1 cut(s)	304
BstC8I	GCNNGC	1 cut(s)	221
BstDEI	CTNAG	5 cut(s)	164, 398, 447, 482, 545
BstDSI	CCRYGG	1 cut(s)	752
BstENI	CCTNNNNNAGG	1 cut(s)	290
BstF5I	GGATG	1 cut(s)	638
BstHHI	GCGC	1 cut(s)	404
BstKTI	GATC	3 cut(s)	58, 478, 771
BstMAI	GTCTC	3 cut(s)	144, 306, 640
BstMBI	GATC	3 cut(s)	55, 475, 768
BstMCI	CGRYCG	1 cut(s)	815
BstMWI	GCNNNNNNNGC	7 cut(s)	186, 225, 255, 304, 618, 671, 705
BstNI	CCWGG	2 cut(s)	98, 714
BstNSI	RCATGY	2 cut(s)	322, 580
BstSCI	CCNGG	2 cut(s)	96, 712
BstSLI	GKGCMC	2 cut(s)	553, 614
BstV1I	GCAGC	1 cut(s)	294
BstV2I	GAAGAC	1 cut(s)	198
BsuRI	GGCC	3 cut(s)	708, 736, 758
BtgI	CCRYGG	1 cut(s)	752
BtrI	CACGTC	2 cut(s)	91, 267
BtsCI	GGATG	1 cut(s)	638
BtsIMutI	CAGTG	1 cut(s)	51
BveI	ACCTGC	1 cut(s)	811
Cac8I	GCNNGC	1 cut(s)	221
CaiI	CAGNNNCTG	1 cut(s)	304
CfoI	GCGC	1 cut(s)	404
Cfr13I	GGNCC	2 cut(s)	280, 756
CspCI	CAANNNNNGTGG	2 cut(s)	393, 428
CviAII	CATG	4 cut(s)	319, 577, 607, 618
CviJI	RGCY	8 cut(s)	162, 544, 559, 699, 708, 736, 750, 758
CviKI_1	RGCY	8 cut(s)	162, 544, 559, 699, 708, 736, 750, 758
DdeI	CTNAG	5 cut(s)	164, 398, 447, 482, 545
DpnI	GATC	3 cut(s)	57, 477, 770
DpnII	GATC	3 cut(s)	55, 475, 768
DraIII	CACNNNGTG	1 cut(s)	609
EaeI	YGGCCR	1 cut(s)	706
Eam1104I	CTCTTC	1 cut(s)	504
EarI	CTCTTC	1 cut(s)	504
EciI	GGCGGA	3 cut(s)	218, 243, 272
Eco130I	CCWWGG	1 cut(s)	291
Eco47I	GGWCC	1 cut(s)	280
Eco88I	CYCGRG	1 cut(s)	311
EcoNI	CCTNNNNNAGG	1 cut(s)	290
EcoRII	CCWGG	2 cut(s)	96, 712
EcoT14I	CCWWGG	1 cut(s)	291
ErhI	CCWWGG	1 cut(s)	291
Esp3I	CGTCTC	1 cut(s)	144
FaeI	CATG	4 cut(s)	322, 580, 610, 621
FaiI	YATR	4 cut(s)	320, 578, 608, 619
FatI	CATG	4 cut(s)	318, 576, 606, 617
FauI	CCCGC	2 cut(s)	161, 805
FbaI	TGATCA	1 cut(s)	475
Fnu4HI	GCNGC	4 cut(s)	102, 256, 259, 308
FokI	GGATG	1 cut(s)	625
Fsp4HI	GCNGC	4 cut(s)	102, 256, 259, 308
FspBI	CTAG	1 cut(s)	660
GlaI	GCGC	1 cut(s)	403
GluI	GCNGC	4 cut(s)	102, 256, 259, 308
HaeIII	GGCC	3 cut(s)	708, 736, 758
HapII	CCGG	2 cut(s)	433, 689
HhaI	GCGC	1 cut(s)	404
Hin1I	GRCGYC	1 cut(s)	68
Hin1II	CATG	4 cut(s)	322, 580, 610, 621
Hin6I	GCGC	1 cut(s)	402
HinP1I	GCGC	1 cut(s)	402
HinfI	GANTC	4 cut(s)	7, 48, 84, 499
HpaII	CCGG	2 cut(s)	433, 689
HphI	GGTGA	2 cut(s)	280, 595
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	2 cut(s)	144, 429
Hpy188III	TCNNGA	2 cut(s)	11, 816
Hpy8I	GTNNAC	1 cut(s)	94
Hpy99I	CGWCG	5 cut(s)	70, 73, 92, 239, 271
HpyAV	CCTTC	3 cut(s)	271, 624, 712
HpyCH4III	ACNGT	4 cut(s)	154, 349, 570, 685
HpyCH4IV	ACGT	3 cut(s)	68, 90, 266
HpyCH4V	TGCA	6 cut(s)	4, 526, 538, 580, 794, 806
HpyF10VI	GCNNNNNNNGC	7 cut(s)	186, 225, 255, 304, 618, 671, 705
HpyF3I	CTNAG	5 cut(s)	164, 398, 447, 482, 545
HpySE526I	ACGT	3 cut(s)	68, 90, 266
Hsp92I	GRCGYC	1 cut(s)	68
Hsp92II	CATG	4 cut(s)	322, 580, 610, 621
HspAI	GCGC	1 cut(s)	402
Ksp22I	TGATCA	1 cut(s)	475
Kzo9I	GATC	3 cut(s)	55, 475, 768
LmnI	GCTCC	2 cut(s)	295, 328
Lsp1109I	GCAGC	1 cut(s)	294
LweI	GCATC	3 cut(s)	781, 787, 815
MaeI	CTAG	1 cut(s)	660
MaeII	ACGT	3 cut(s)	68, 90, 266
MalI	GATC	3 cut(s)	57, 477, 770
MbiI	CCGCTC	1 cut(s)	168
MboI	GATC	3 cut(s)	55, 475, 768
MboII	GAAGA	6 cut(s)	203, 283, 286, 521, 639, 645
MhlI	GDGCHC	4 cut(s)	221, 333, 553, 614
MlsI	TGGCCA	1 cut(s)	708
MluCI	AATT	2 cut(s)	358, 377
MluNI	TGGCCA	1 cut(s)	708
Mox20I	TGGCCA	1 cut(s)	708
MscI	TGGCCA	1 cut(s)	708
MslI	CAYNNNNRTG	2 cut(s)	581, 622
Msp20I	TGGCCA	1 cut(s)	708
MspI	CCGG	2 cut(s)	433, 689
MspR9I	CCNGG	2 cut(s)	98, 714
MvaI	CCWGG	2 cut(s)	98, 714
MwoI	GCNNNNNNNGC	7 cut(s)	186, 225, 255, 304, 618, 671, 705
NdeII	GATC	3 cut(s)	55, 475, 768
NlaIII	CATG	4 cut(s)	322, 580, 610, 621
NmeAIII	GCCGAG	1 cut(s)	204
NspI	RCATGY	2 cut(s)	322, 580
PaeR7I	CTCGAG	1 cut(s)	311
PaqCI	CACCTGC	1 cut(s)	811
PasI	CCCWGGG	1 cut(s)	713
PciI	ACATGT	1 cut(s)	318
PcsI	WCGNNNNNNNCGW	2 cut(s)	129, 231
PfeI	GAWTC	4 cut(s)	7, 48, 84, 499
PflMI	CCANNNNNTGG	1 cut(s)	628
PkrI	GCNGC	4 cut(s)	103, 257, 260, 309
PscI	ACATGT	1 cut(s)	318
Psp6I	CCWGG	2 cut(s)	96, 712
PspGI	CCWGG	2 cut(s)	96, 712
PspPI	GGNCC	2 cut(s)	280, 756
PspXI	VCTCGAGB	1 cut(s)	311
PstNI	CAGNNNCTG	1 cut(s)	304
RseI	CAYNNNNRTG	2 cut(s)	581, 622
SatI	GCNGC	4 cut(s)	102, 256, 259, 308
Sau3AI	GATC	3 cut(s)	55, 475, 768
Sau96I	GGNCC	2 cut(s)	280, 756
ScrFI	CCNGG	2 cut(s)	98, 714
SduI	GDGCHC	4 cut(s)	221, 333, 553, 614
SfaNI	GCATC	3 cut(s)	781, 787, 815
Sfr274I	CTCGAG	1 cut(s)	311
SinI	GGWCC	1 cut(s)	280
SlaI	CTCGAG	1 cut(s)	311
SmiMI	CAYNNNNRTG	2 cut(s)	581, 622
SmlI	CTYRAG	2 cut(s)	311, 554
SmoI	CTYRAG	2 cut(s)	311, 554
Sse9I	AATT	2 cut(s)	358, 377
SsiI	CCGC	9 cut(s)	101, 104, 168, 203, 228, 255, 258, 283, 798
SspMI	CTAG	1 cut(s)	660
StyD4I	CCNGG	2 cut(s)	96, 712
StyI	CCWWGG	1 cut(s)	291
TaaI	ACNGT	4 cut(s)	154, 349, 570, 685
TaiI	ACGT	3 cut(s)	71, 93, 269
TaqI	TCGA	7 cut(s)	58, 87, 158, 269, 312, 362, 781
TaqII	GACCGA	1 cut(s)	801
TasI	AATT	2 cut(s)	358, 377
TauI	GCSGC	3 cut(s)	104, 258, 261
TfiI	GAWTC	4 cut(s)	7, 48, 84, 499
TscAI	CASTG	1 cut(s)	58
TseI	GCWGC	1 cut(s)	307
TspDTI	ATGAA	3 cut(s)	599, 606, 639
TspRI	CASTG	1 cut(s)	58
Van91I	CCANNNNNTGG	1 cut(s)	628
VpaK11BI	GGWCC	1 cut(s)	280
XagI	CCTNNNNNAGG	1 cut(s)	290
XceI	RCATGY	2 cut(s)	322, 580
XcmI	CCANNNNNNNNNTGG	1 cut(s)	750
XhoI	CTCGAG	1 cut(s)	311
XspI	CTAG	1 cut(s)	660
ZraI	GACGTC	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.