Rh1CG187500

homeobox-leucine zipper protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0013963
Physical Location & Seq
Forward (+)
40922976 .. 40924105
1130 bp
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UTR
Exon/CDS
Intron
Rh1CG187500.1

Sequence Viewer

Length: 456 bp
ATGGGTGACAAAAATGATGAGTTGGGGTTGAGTTTAGGTCTGGGGTTGGGTTATGGAGCCAAACCGTCTTCTTCTTCTTCTTCCTCATTTCACTTGAACCTCATGCAGAATCCAGAAACTAATCATCAACGAGTTTTTGGGATTTTTGGATTCACTGATCGAAATGCGACGTCGTTTCGGCGAGGAATCGACGTGAACCAGGCGGCGGTGGGGGATTTCGAGGACGAAAACGGCGTGTCGTCTCCGAACAGCACTGTGTCGAGCCTGAGCGGGAAGCGCAGCGAGAGAGGCGAAGACAACGAGGCGGAGAGGACTTCGTGCTCGCTCGGGGGTAGCGACGACGAGGACGGCATTGGCGGCGGCGACACGTCGAAGAAGAAGCTCCGGCTCACCAAGGAGCAGTCTCTCCTGCTTGAGGACATGTTCAAGGAGCACCATACTCTCAACACGGACTAA

Protein Analysis

151

Amino Acids

16.23

Weight (kDa)

4.87

Isoelectric Point (pI)

36.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HD-ZIP_N PF04618 1 - 96 3.1e-20 HD-ZIP protein N terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013963)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G60390
fragaria_vesca FvH4_7g09820 FvH4_7g09820 FvH4_7g09820
malus_domestica MD02G1216800.v1.1
prunus_persica Prupe.2G127300_v2.0.a1
pyrus_communis pycom02g17850
rosa_chinensis RchiOBHm_Chr1g0346981
rosa_laevigata RLG00000028766
rosa_multiflora Rmu_co8350045.1_g000001 Rmu_sc0002705.1_g000018
rosa_roxburghii Rroxscaffold_4G00308000
rosa_samantha Rh1AG202800 Rh1BG168800 Rh1CG187500 Rh1DG199500
rosa_wichuraiana Rw1G016990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 173
AccBSI CCGCTC 1 cut(s) 270
AciI CCGC 6 cut(s) 203, 206, 270, 305, 357, 360
AcyI GRCGYC 1 cut(s) 170
AfiI CCNNNNNNNGG 2 cut(s) 205, 415
AflIII ACRYGT 2 cut(s) 366, 420
AgsI TTSAA 2 cut(s) 97, 427
AjiI CACGTC 2 cut(s) 193, 369
AjnI CCWGG 1 cut(s) 198
AluBI AGCT 1 cut(s) 382
AluI AGCT 1 cut(s) 382
Alw21I GWGCWC 2 cut(s) 323, 435
Alw26I GTCTC 2 cut(s) 246, 408
Ama87I CYCGRG 1 cut(s) 326
ApeKI GCWGC 1 cut(s) 279
AspLEI GCGC 1 cut(s) 279
AsuHPI GGTGA 2 cut(s) 17, 382
AvaI CYCGRG 1 cut(s) 326
BbsI GAAGAC 2 cut(s) 60, 300
Bbv12I GWGCWC 2 cut(s) 323, 435
BbvI GCAGC 1 cut(s) 291
BceAI ACGGC 2 cut(s) 247, 364
BciT130I CCWGG 1 cut(s) 200
BcoDI GTCTC 2 cut(s) 246, 408
BisI GCNGC 4 cut(s) 204, 280, 358, 361
BlsI GCNGC 4 cut(s) 205, 281, 359, 362
Bme1390I CCNGG 1 cut(s) 200
BmeT110I CYCGRG 1 cut(s) 326
BmgBI CACGTC 2 cut(s) 193, 369
BmiI GGNNCC 1 cut(s) 58
BmrFI CCNGG 1 cut(s) 200
BpiI GAAGAC 2 cut(s) 60, 300
Bpu10I CCTNAGC 1 cut(s) 266
BpuEI CTTGAG 1 cut(s) 434
BsaHI GRCGYC 1 cut(s) 170
BsaJI CCNNGG 1 cut(s) 393
Bsc4I CCNNNNNNNGG 2 cut(s) 205, 415
BseBI CCWGG 1 cut(s) 200
BseDI CCNNGG 1 cut(s) 393
BseLI CCNNNNNNNGG 2 cut(s) 205, 415
BseMII CTCAG 1 cut(s) 257
BseXI GCAGC 1 cut(s) 291
BsiHKAI GWGCWC 2 cut(s) 323, 435
BsiHKCI CYCGRG 1 cut(s) 326
BsiSI CCGG 1 cut(s) 385
BslI CCNNNNNNNGG 2 cut(s) 205, 415
BsmAI GTCTC 2 cut(s) 246, 408
BsmBI CGTCTC 1 cut(s) 246
BsoBI CYCGRG 1 cut(s) 326
Bsp1286I GDGCHC 2 cut(s) 323, 435
Bsp143I GATC 1 cut(s) 157
BspACI CCGC 6 cut(s) 203, 206, 270, 305, 357, 360
BspCNI CTCAG 1 cut(s) 258
BspLI GGNNCC 1 cut(s) 58
BsrBI CCGCTC 1 cut(s) 270
BssECI CCNNGG 1 cut(s) 393
BssMI GATC 1 cut(s) 157
BssNI GRCGYC 1 cut(s) 170
BssT1I CCWWGG 1 cut(s) 393
Bst2UI CCWGG 1 cut(s) 200
Bst4CI ACNGT 2 cut(s) 66, 256
BstACI GRCGYC 1 cut(s) 170
BstC8I GCNNGC 1 cut(s) 323
BstDEI CTNAG 1 cut(s) 266
BstENI CCTNNNNNAGG 1 cut(s) 413
BstHHI GCGC 1 cut(s) 279
BstKTI GATC 1 cut(s) 160
BstMAI GTCTC 2 cut(s) 246, 408
BstMBI GATC 1 cut(s) 157
BstMWI GCNNNNNNNGC 3 cut(s) 276, 288, 357
BstNI CCWGG 1 cut(s) 200
BstNSI RCATGY 1 cut(s) 424
BstSCI CCNGG 1 cut(s) 198
BstV1I GCAGC 1 cut(s) 291
BstV2I GAAGAC 2 cut(s) 60, 300
BtrI CACGTC 2 cut(s) 193, 369
BtsIMutI CAGTG 2 cut(s) 153, 252
Cac8I GCNNGC 1 cut(s) 323
CfoI GCGC 1 cut(s) 279
CviAII CATG 2 cut(s) 103, 421
CviJI RGCY 4 cut(s) 59, 264, 382, 388
CviKI_1 RGCY 4 cut(s) 59, 264, 382, 388
DdeI CTNAG 1 cut(s) 266
DpnI GATC 1 cut(s) 159
DpnII GATC 1 cut(s) 157
EciI GGCGGA 1 cut(s) 320
Eco130I CCWWGG 1 cut(s) 393
Eco88I CYCGRG 1 cut(s) 326
EcoNI CCTNNNNNAGG 1 cut(s) 413
EcoRII CCWGG 1 cut(s) 198
EcoT14I CCWWGG 1 cut(s) 393
ErhI CCWWGG 1 cut(s) 393
Esp3I CGTCTC 1 cut(s) 246
FaeI CATG 2 cut(s) 106, 424
FaiI YATR 4 cut(s) 54, 104, 422, 438
FatI CATG 2 cut(s) 102, 420
FauI CCCGC 1 cut(s) 263
Fnu4HI GCNGC 4 cut(s) 204, 280, 358, 361
Fsp4HI GCNGC 4 cut(s) 204, 280, 358, 361
GlaI GCGC 1 cut(s) 278
GluI GCNGC 4 cut(s) 204, 280, 358, 361
HapII CCGG 1 cut(s) 385
HhaI GCGC 1 cut(s) 279
Hin1I GRCGYC 1 cut(s) 170
Hin1II CATG 2 cut(s) 106, 424
Hin6I GCGC 1 cut(s) 277
HinP1I GCGC 1 cut(s) 277
HinfI GANTC 3 cut(s) 109, 150, 186
HpaII CCGG 1 cut(s) 385
HphI GGTGA 2 cut(s) 17, 382
Hpy166II GTNNAC 1 cut(s) 196
Hpy188I TCNGA 1 cut(s) 246
Hpy188III TCNNGA 1 cut(s) 113
Hpy8I GTNNAC 1 cut(s) 196
Hpy99I CGWCG 6 cut(s) 172, 175, 194, 341, 344, 373
HpyCH4III ACNGT 2 cut(s) 66, 256
HpyCH4IV ACGT 3 cut(s) 170, 192, 368
HpyCH4V TGCA 1 cut(s) 106
HpyF10VI GCNNNNNNNGC 3 cut(s) 276, 288, 357
HpyF3I CTNAG 1 cut(s) 266
HpySE526I ACGT 3 cut(s) 170, 192, 368
Hsp92I GRCGYC 1 cut(s) 170
Hsp92II CATG 2 cut(s) 106, 424
HspAI GCGC 1 cut(s) 277
Kzo9I GATC 1 cut(s) 157
LmnI GCTCC 4 cut(s) 56, 387, 397, 430
LpnPI CCDG 7 cut(s) 26, 126, 185, 212, 278, 398, 422
Lsp1109I GCAGC 1 cut(s) 291
MaeII ACGT 3 cut(s) 170, 192, 368
MaeIII GTNAC 1 cut(s) 5
MalI GATC 1 cut(s) 159
MbiI CCGCTC 1 cut(s) 270
MboI GATC 1 cut(s) 157
MboII GAAGA 8 cut(s) 60, 63, 66, 69, 72, 305, 385, 388
MhlI GDGCHC 2 cut(s) 323, 435
MnlI CCTC 9 cut(s) 94, 110, 176, 214, 281, 295, 303, 337, 409
MspI CCGG 1 cut(s) 385
MspR9I CCNGG 1 cut(s) 200
MvaI CCWGG 1 cut(s) 200
MwoI GCNNNNNNNGC 3 cut(s) 276, 288, 357
NdeII GATC 1 cut(s) 157
NlaIII CATG 2 cut(s) 106, 424
NlaIV GGNNCC 1 cut(s) 58
NmuCI GTSAC 1 cut(s) 5
NspI RCATGY 1 cut(s) 424
PciI ACATGT 1 cut(s) 420
PcsI WCGNNNNNNNCGW 2 cut(s) 231, 333
PfeI GAWTC 3 cut(s) 109, 150, 186
PkrI GCNGC 4 cut(s) 205, 281, 359, 362
PscI ACATGT 1 cut(s) 420
Psp6I CCWGG 1 cut(s) 198
PspGI CCWGG 1 cut(s) 198
PspN4I GGNNCC 1 cut(s) 58
SatI GCNGC 4 cut(s) 204, 280, 358, 361
Sau3AI GATC 1 cut(s) 157
ScrFI CCNGG 1 cut(s) 200
SduI GDGCHC 2 cut(s) 323, 435
SetI ASST 6 cut(s) 40, 102, 173, 195, 371, 384
SmlI CTYRAG 1 cut(s) 413
SmoI CTYRAG 1 cut(s) 413
SsiI CCGC 6 cut(s) 203, 206, 270, 305, 357, 360
StyD4I CCNGG 1 cut(s) 198
StyI CCWWGG 1 cut(s) 393
TaaI ACNGT 2 cut(s) 66, 256
TaiI ACGT 3 cut(s) 173, 195, 371
TaqI TCGA 5 cut(s) 160, 189, 219, 260, 371
TauI GCSGC 3 cut(s) 206, 360, 363
TfiI GAWTC 3 cut(s) 109, 150, 186
TscAI CASTG 2 cut(s) 160, 259
TseFI GTSAC 1 cut(s) 5
TseI GCWGC 1 cut(s) 279
Tsp45I GTSAC 1 cut(s) 5
TspRI CASTG 2 cut(s) 160, 259
XagI CCTNNNNNAGG 1 cut(s) 413
XceI RCATGY 1 cut(s) 424
ZraI GACGTC 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.