Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8350045.1

Orthogroup ID

OG0013963

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 607

Gene Structure 607 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8350045.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

atgggtgacaaaaatgatgagttggggttgagtttaggtctggggttgggtcatggagccaaaccgtcttcttcttcttcttcctcgtttcacttgaacctcatgcagaatccagaaactaatcatcaacgagtttttgggatttttggattcaccgatcgaaatgcgacgtcgtttcggcgaggaatcgacgtgaaccaggcggcggtgggggatttcgaggacgaaaacggcgtgtcgtctccgaacagcacggtgtcgagcctgagcgggaagcgcagcgagagaggcgaagacaacgaggcggagaggacttcgtgctcgctcggcggaagcgacgacgaggacggcattggcggcggcgacacgtcgaagaagaagctccggctcaccaaggagcagtctctcctgcttgaggacatgttcaaggagcaccatactctcaacacg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005911 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009639 GO:0009641 GO:0009719 GO:0009725 GO:0009889 GO:0010033 GO:0010218 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030054 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055044 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ HD-ZIP_N Homeobox

Protein Analysis

150

Amino Acids

16.09

Weight (kDa)

5.05

Isoelectric Point (pI)

36.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60390
fragaria_vesca	FvH4_7g09820 FvH4_7g09820 FvH4_7g09820
malus_domestica	MD02G1216800.v1.1
prunus_persica	Prupe.2G127300_v2.0.a1
pyrus_communis	pycom02g17850
rosa_chinensis	RchiOBHm_Chr1g0346981
rosa_laevigata	RLG00000028766
rosa_multiflora	Rmu_co8350045.1_g000001 Rmu_sc0002705.1_g000018
rosa_roxburghii	Rroxscaffold_4G00308000
rosa_samantha	Rh1AG202800 Rh1BG168800 Rh1CG187500 Rh1DG199500
rosa_wichuraiana	Rw1G016990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	173
AccBSI	CCGCTC	1 cut(s)	270
AciI	CCGC	7 cut(s)	203, 206, 270, 305, 330, 357, 360
AcyI	GRCGYC	1 cut(s)	170
AfiI	CCNNNNNNNGG	2 cut(s)	205, 415
AflIII	ACRYGT	2 cut(s)	366, 420
AgsI	TTSAA	2 cut(s)	97, 427
AjiI	CACGTC	2 cut(s)	193, 369
AjnI	CCWGG	1 cut(s)	198
AluBI	AGCT	1 cut(s)	382
AluI	AGCT	1 cut(s)	382
Alw21I	GWGCWC	2 cut(s)	323, 435
Alw26I	GTCTC	2 cut(s)	246, 408
ApeKI	GCWGC	1 cut(s)	279
AspLEI	GCGC	1 cut(s)	279
AsuHPI	GGTGA	3 cut(s)	17, 145, 382
BbsI	GAAGAC	2 cut(s)	60, 300
Bbv12I	GWGCWC	2 cut(s)	323, 435
BbvI	GCAGC	1 cut(s)	291
BceAI	ACGGC	2 cut(s)	247, 364
BcgI	CGANNNNNNTGC	2 cut(s)	146, 180
BciT130I	CCWGG	1 cut(s)	200
BcoDI	GTCTC	2 cut(s)	246, 408
BisI	GCNGC	4 cut(s)	204, 280, 358, 361
BlsI	GCNGC	4 cut(s)	205, 281, 359, 362
Bme1390I	CCNGG	1 cut(s)	200
BmgBI	CACGTC	2 cut(s)	193, 369
BmiI	GGNNCC	1 cut(s)	58
BmrFI	CCNGG	1 cut(s)	200
BpiI	GAAGAC	2 cut(s)	60, 300
Bpu10I	CCTNAGC	1 cut(s)	266
BpuEI	CTTGAG	1 cut(s)	434
BsaHI	GRCGYC	1 cut(s)	170
BsaJI	CCNNGG	1 cut(s)	393
Bsc4I	CCNNNNNNNGG	2 cut(s)	205, 415
BseBI	CCWGG	1 cut(s)	200
BseDI	CCNNGG	1 cut(s)	393
BseLI	CCNNNNNNNGG	2 cut(s)	205, 415
BseMII	CTCAG	1 cut(s)	257
BseXI	GCAGC	1 cut(s)	291
Bsh1285I	CGRYCG	1 cut(s)	160
BsiEI	CGRYCG	1 cut(s)	160
BsiHKAI	GWGCWC	2 cut(s)	323, 435
BsiSI	CCGG	1 cut(s)	385
BslI	CCNNNNNNNGG	2 cut(s)	205, 415
BsmAI	GTCTC	2 cut(s)	246, 408
BsmBI	CGTCTC	1 cut(s)	246
Bsp1286I	GDGCHC	2 cut(s)	323, 435
Bsp143I	GATC	1 cut(s)	157
BspACI	CCGC	7 cut(s)	203, 206, 270, 305, 330, 357, 360
BspCNI	CTCAG	1 cut(s)	258
BspLI	GGNNCC	1 cut(s)	58
BsrBI	CCGCTC	1 cut(s)	270
BssECI	CCNNGG	1 cut(s)	393
BssMI	GATC	1 cut(s)	157
BssNI	GRCGYC	1 cut(s)	170
BssT1I	CCWWGG	1 cut(s)	393
Bst2UI	CCWGG	1 cut(s)	200
Bst4CI	ACNGT	2 cut(s)	66, 256
BstACI	GRCGYC	1 cut(s)	170
BstC8I	GCNNGC	1 cut(s)	323
BstDEI	CTNAG	1 cut(s)	266
BstENI	CCTNNNNNAGG	1 cut(s)	413
BstHHI	GCGC	1 cut(s)	279
BstKTI	GATC	1 cut(s)	160
BstMAI	GTCTC	2 cut(s)	246, 408
BstMBI	GATC	1 cut(s)	157
BstMCI	CGRYCG	1 cut(s)	160
BstMWI	GCNNNNNNNGC	4 cut(s)	276, 288, 327, 357
BstNI	CCWGG	1 cut(s)	200
BstNSI	RCATGY	1 cut(s)	424
BstSCI	CCNGG	1 cut(s)	198
BstV1I	GCAGC	1 cut(s)	291
BstV2I	GAAGAC	2 cut(s)	60, 300
BtrI	CACGTC	2 cut(s)	193, 369
Cac8I	GCNNGC	1 cut(s)	323
CfoI	GCGC	1 cut(s)	279
CviAII	CATG	3 cut(s)	53, 103, 421
CviJI	RGCY	4 cut(s)	59, 264, 382, 388
CviKI_1	RGCY	4 cut(s)	59, 264, 382, 388
DdeI	CTNAG	1 cut(s)	266
DpnI	GATC	1 cut(s)	159
DpnII	GATC	1 cut(s)	157
EciI	GGCGGA	2 cut(s)	320, 345
Eco130I	CCWWGG	1 cut(s)	393
EcoNI	CCTNNNNNAGG	1 cut(s)	413
EcoRII	CCWGG	1 cut(s)	198
EcoT14I	CCWWGG	1 cut(s)	393
ErhI	CCWWGG	1 cut(s)	393
Esp3I	CGTCTC	1 cut(s)	246
FaeI	CATG	3 cut(s)	56, 106, 424
FaiI	YATR	4 cut(s)	54, 104, 422, 438
FatI	CATG	3 cut(s)	52, 102, 420
FauI	CCCGC	1 cut(s)	263
Fnu4HI	GCNGC	4 cut(s)	204, 280, 358, 361
Fsp4HI	GCNGC	4 cut(s)	204, 280, 358, 361
GlaI	GCGC	1 cut(s)	278
GluI	GCNGC	4 cut(s)	204, 280, 358, 361
HapII	CCGG	1 cut(s)	385
HhaI	GCGC	1 cut(s)	279
Hin1I	GRCGYC	1 cut(s)	170
Hin1II	CATG	3 cut(s)	56, 106, 424
Hin6I	GCGC	1 cut(s)	277
HinP1I	GCGC	1 cut(s)	277
HinfI	GANTC	3 cut(s)	109, 150, 186
HpaII	CCGG	1 cut(s)	385
HphI	GGTGA	3 cut(s)	17, 145, 382
Hpy166II	GTNNAC	1 cut(s)	196
Hpy188I	TCNGA	1 cut(s)	246
Hpy188III	TCNNGA	1 cut(s)	113
Hpy8I	GTNNAC	1 cut(s)	196
Hpy99I	CGWCG	6 cut(s)	172, 175, 194, 341, 344, 373
HpyCH4III	ACNGT	2 cut(s)	66, 256
HpyCH4IV	ACGT	3 cut(s)	170, 192, 368
HpyCH4V	TGCA	1 cut(s)	106
HpyF10VI	GCNNNNNNNGC	4 cut(s)	276, 288, 327, 357
HpyF3I	CTNAG	1 cut(s)	266
HpySE526I	ACGT	3 cut(s)	170, 192, 368
Hsp92I	GRCGYC	1 cut(s)	170
Hsp92II	CATG	3 cut(s)	56, 106, 424
HspAI	GCGC	1 cut(s)	277
Kzo9I	GATC	1 cut(s)	157
LmnI	GCTCC	4 cut(s)	56, 387, 397, 430
LpnPI	CCDG	7 cut(s)	26, 126, 185, 212, 278, 398, 422
Lsp1109I	GCAGC	1 cut(s)	291
MaeII	ACGT	3 cut(s)	170, 192, 368
MaeIII	GTNAC	1 cut(s)	5
MalI	GATC	1 cut(s)	159
MbiI	CCGCTC	1 cut(s)	270
MboI	GATC	1 cut(s)	157
MboII	GAAGA	8 cut(s)	60, 63, 66, 69, 72, 305, 385, 388
MhlI	GDGCHC	2 cut(s)	323, 435
MnlI	CCTC	9 cut(s)	94, 110, 176, 214, 281, 295, 303, 337, 409
MspI	CCGG	1 cut(s)	385
MspR9I	CCNGG	1 cut(s)	200
MvaI	CCWGG	1 cut(s)	200
MwoI	GCNNNNNNNGC	4 cut(s)	276, 288, 327, 357
NdeII	GATC	1 cut(s)	157
NlaIII	CATG	3 cut(s)	56, 106, 424
NlaIV	GGNNCC	1 cut(s)	58
NmeAIII	GCCGAG	1 cut(s)	306
NmuCI	GTSAC	1 cut(s)	5
NspI	RCATGY	1 cut(s)	424
PciI	ACATGT	1 cut(s)	420
PcsI	WCGNNNNNNNCGW	2 cut(s)	231, 333
PfeI	GAWTC	3 cut(s)	109, 150, 186
PkrI	GCNGC	4 cut(s)	205, 281, 359, 362
Ple19I	CGATCG	1 cut(s)	160
PscI	ACATGT	1 cut(s)	420
Psp6I	CCWGG	1 cut(s)	198
PspGI	CCWGG	1 cut(s)	198
PspN4I	GGNNCC	1 cut(s)	58
PvuI	CGATCG	1 cut(s)	160
SatI	GCNGC	4 cut(s)	204, 280, 358, 361
Sau3AI	GATC	1 cut(s)	157
ScrFI	CCNGG	1 cut(s)	200
SduI	GDGCHC	2 cut(s)	323, 435
SetI	ASST	6 cut(s)	40, 102, 173, 195, 371, 384
SmlI	CTYRAG	1 cut(s)	413
SmoI	CTYRAG	1 cut(s)	413
SsiI	CCGC	7 cut(s)	203, 206, 270, 305, 330, 357, 360
StyD4I	CCNGG	1 cut(s)	198
StyI	CCWWGG	1 cut(s)	393
TaaI	ACNGT	2 cut(s)	66, 256
TaiI	ACGT	3 cut(s)	173, 195, 371
TaqI	TCGA	5 cut(s)	160, 189, 219, 260, 371
TauI	GCSGC	3 cut(s)	206, 360, 363
TfiI	GAWTC	3 cut(s)	109, 150, 186
TseFI	GTSAC	1 cut(s)	5
TseI	GCWGC	1 cut(s)	279
Tsp45I	GTSAC	1 cut(s)	5
XagI	CCTNNNNNAGG	1 cut(s)	413
XceI	RCATGY	1 cut(s)	424
ZraI	GACGTC	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.