Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0013963

Physical Location & Seq

Genomic Coordinates Forward (+)

37734995 .. 37736878

Gene Structure 1884 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G016990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGGTGACAAAAATGATGAGTTGGGGTTGAGTTTAGGTCTGGGGTTGGGTTATGGAGCCAAACCGTCTTCTTCTTCTTCTTCCTCGTTTCACTTGAACCTCATGCAGAATCCAGAAACTAATCATCAGCGAGTTTTTGGGATTTTTGGATTCACTGATCGAAATGCGACGTCGTTTCGGCGAGGAATCGACGTGAACCAGGCGGCGGTGGGGGATTTCGAGGACGAAAACGGCGTGTCGTCTCCGAACAGCACGGTGTCGAGCCTGAGCGGGAAGCGCAGCGAGAGAGGCGAAGACAACGAGGCGGAGAGGACTTCCTGCTCGCTCGGCGGAAGCGACGACGAGGACGGCATTGGCGGCGGCGACACGTCGAAGAAGAAGCTCCGGCTCACCAAGGAGCAGTCTCTCCTGCTTGAGGACATGTTCAAGGAGCACCATACTCTCAACACGGTTAGTGTCAATTCGAGGCAAAAGCAGGAATTGGCACAGAAGTTGAACCTGAGCGCAAGACAAGTGGAGGTGTGGTTTCAGAACAGGAGGGCAAGGACTAAGTTGAAGCAAACAGAGGTGGATTGTGATCAACTAAGGAAGTGCTGTGAGAATCTGACAGAAGAGAACAGGAGGTTGCAGAAAGAAGTGCAAGAGCTGAGGGCACTCAAGCTTTCGCCACAGTTCTACATGCAAATGAACCCCCCCACGACTCTCACCATGTGCCCTTCATGCCAATGTGTGGGTGTCTCATCCTCGTCCTCATCTTCTGCTAGTGCTACCACTGCTTCCTCTACAGTTCCGGCAACCAGCCCAACTGGCCACCCAGGGCAGCCAACTATCCATCGGCCTGTTCCAATCAGCCCGTGGGCCACATTGCCGATCCCGCAGCATCGACCAGTTGATGCACCTGCACCTGCACCTGCACCTCGGTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005911 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009639 GO:0009641 GO:0009719 GO:0009725 GO:0009889 GO:0010033 GO:0010218 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030054 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055044 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ HD-ZIP_N Homeobox

Protein Analysis

308

Amino Acids

33.51

Weight (kDa)

7.04

Isoelectric Point (pI)

58.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HD-ZIP_N	PF04618	1 - 96	1.1e-19	HD-ZIP protein N terminus
Homeodomain	PF00046	125 - 184	8.2e-14	Homeodomain
HALZ	PF02183	186 - 220	1.7e-10	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60390
fragaria_vesca	FvH4_7g09820 FvH4_7g09820 FvH4_7g09820
malus_domestica	MD02G1216800.v1.1
prunus_persica	Prupe.2G127300_v2.0.a1
pyrus_communis	pycom02g17850
rosa_chinensis	RchiOBHm_Chr1g0346981
rosa_laevigata	RLG00000028766
rosa_multiflora	Rmu_co8350045.1_g000001 Rmu_sc0002705.1_g000018
rosa_roxburghii	Rroxscaffold_4G00308000
rosa_samantha	Rh1AG202800 Rh1BG168800 Rh1CG187500 Rh1DG199500
rosa_wichuraiana	Rw1G016990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	3 cut(s)	907, 913, 919
AatII	GACGTC	1 cut(s)	173
Acc36I	ACCTGC	3 cut(s)	907, 913, 919
AccB7I	CCANNNNNTGG	1 cut(s)	730
AccBSI	CCGCTC	1 cut(s)	270
AciI	CCGC	8 cut(s)	203, 206, 270, 305, 330, 357, 360, 875
AclWI	GGATC	1 cut(s)	865
AcoI	YGGCCR	1 cut(s)	808
AcyI	GRCGYC	1 cut(s)	170
AdeI	CACNNNGTG	1 cut(s)	711
AfiI	CCNNNNNNNGG	3 cut(s)	205, 415, 730
AflIII	ACRYGT	2 cut(s)	366, 420
AgsI	TTSAA	4 cut(s)	97, 427, 496, 556
AjiI	CACGTC	2 cut(s)	193, 369
AjnI	CCWGG	2 cut(s)	198, 814
AluBI	AGCT	3 cut(s)	382, 646, 661
AluI	AGCT	3 cut(s)	382, 646, 661
Alw21I	GWGCWC	1 cut(s)	435
Alw26I	GTCTC	3 cut(s)	246, 408, 742
AlwI	GGATC	1 cut(s)	865
AoxI	GGCC	3 cut(s)	808, 836, 858
ApeKI	GCWGC	3 cut(s)	279, 820, 877
AspLEI	GCGC	2 cut(s)	279, 506
AspS9I	GGNCC	1 cut(s)	858
AsuHPI	GGTGA	3 cut(s)	17, 382, 697
BaeGI	GKGCMC	2 cut(s)	655, 716
BalI	TGGCCA	1 cut(s)	810
BbsI	GAAGAC	2 cut(s)	60, 300
Bbv12I	GWGCWC	1 cut(s)	435
BbvCI	CCTCAGC	1 cut(s)	647
BbvI	GCAGC	3 cut(s)	291, 832, 889
BccI	CCATC	1 cut(s)	840
BceAI	ACGGC	2 cut(s)	247, 364
BcgI	CGANNNNNNTGC	1 cut(s)	903
BciT130I	CCWGG	2 cut(s)	200, 816
BclI	TGATCA	1 cut(s)	577
BcoDI	GTCTC	3 cut(s)	246, 408, 742
BfaI	CTAG	1 cut(s)	762
BfmI	CTRYAG	1 cut(s)	783
BfuAI	ACCTGC	3 cut(s)	907, 913, 919
BglI	GCCNNNNNGGC	1 cut(s)	807
BisI	GCNGC	6 cut(s)	204, 280, 358, 361, 821, 878
BlsI	GCNGC	6 cut(s)	205, 281, 359, 362, 822, 879
Bme1390I	CCNGG	2 cut(s)	200, 816
BmgBI	CACGTC	2 cut(s)	193, 369
BmgT120I	GGNCC	1 cut(s)	858
BmiI	GGNNCC	1 cut(s)	58
BmrFI	CCNGG	2 cut(s)	200, 816
BmsI	GCATC	2 cut(s)	883, 889
BpiI	GAAGAC	2 cut(s)	60, 300
Bpu10I	CCTNAGC	3 cut(s)	266, 500, 647
BpuEI	CTTGAG	2 cut(s)	434, 641
BsaBI	GATNNNNATC	1 cut(s)	576
BsaHI	GRCGYC	1 cut(s)	170
BsaJI	CCNNGG	5 cut(s)	393, 814, 815, 854, 917
BsaXI	ACNNNNNCTCC	2 cut(s)	509, 539
Bsc4I	CCNNNNNNNGG	3 cut(s)	205, 415, 730
Bse1I	ACTGG	2 cut(s)	811, 887
Bse3DI	GCAATG	1 cut(s)	863
Bse8I	GATNNNNATC	1 cut(s)	576
BseBI	CCWGG	2 cut(s)	200, 816
BseDI	CCNNGG	5 cut(s)	393, 814, 815, 854, 917
BseGI	GGATG	1 cut(s)	740
BseJI	GATNNNNATC	1 cut(s)	576
BseLI	CCNNNNNNNGG	3 cut(s)	205, 415, 730
BseMI	GCAATG	1 cut(s)	863
BseMII	CTCAG	3 cut(s)	257, 491, 638
BseNI	ACTGG	2 cut(s)	811, 887
BseSI	GKGCMC	2 cut(s)	655, 716
BseXI	GCAGC	3 cut(s)	291, 832, 889
BsgI	GTGCAG	3 cut(s)	885, 891, 897
Bsh1285I	CGRYCG	1 cut(s)	923
BshFI	GGCC	3 cut(s)	810, 838, 860
BsiEI	CGRYCG	1 cut(s)	923
BsiHKAI	GWGCWC	1 cut(s)	435
BsiSI	CCGG	2 cut(s)	385, 791
BslI	CCNNNNNNNGG	3 cut(s)	205, 415, 730
BsmAI	GTCTC	3 cut(s)	246, 408, 742
BsmBI	CGTCTC	1 cut(s)	246
BsnI	GGCC	3 cut(s)	810, 838, 860
Bsp1286I	GDGCHC	3 cut(s)	435, 655, 716
Bsp143I	GATC	3 cut(s)	157, 577, 870
BspACI	CCGC	8 cut(s)	203, 206, 270, 305, 330, 357, 360, 875
BspANI	GGCC	3 cut(s)	810, 838, 860
BspCNI	CTCAG	3 cut(s)	258, 492, 639
BspLI	GGNNCC	1 cut(s)	58
BspMI	ACCTGC	3 cut(s)	907, 913, 919
BspPI	GGATC	1 cut(s)	865
BsrBI	CCGCTC	1 cut(s)	270
BsrDI	GCAATG	1 cut(s)	863
BsrI	ACTGG	2 cut(s)	811, 887
BssECI	CCNNGG	5 cut(s)	393, 814, 815, 854, 917
BssMI	GATC	3 cut(s)	157, 577, 870
BssNI	GRCGYC	1 cut(s)	170
BssT1I	CCWWGG	1 cut(s)	393
Bst2UI	CCWGG	2 cut(s)	200, 816
Bst4CI	ACNGT	5 cut(s)	66, 256, 451, 672, 787
Bst6I	CTCTTC	1 cut(s)	606
BstACI	GRCGYC	1 cut(s)	170
BstC8I	GCNNGC	1 cut(s)	323
BstDEI	CTNAG	5 cut(s)	266, 500, 549, 584, 647
BstDSI	CCRYGG	1 cut(s)	854
BstENI	CCTNNNNNAGG	1 cut(s)	413
BstF5I	GGATG	1 cut(s)	740
BstHHI	GCGC	2 cut(s)	279, 506
BstKTI	GATC	3 cut(s)	160, 580, 873
BstMAI	GTCTC	3 cut(s)	246, 408, 742
BstMBI	GATC	3 cut(s)	157, 577, 870
BstMCI	CGRYCG	1 cut(s)	923
BstMWI	GCNNNNNNNGC	8 cut(s)	276, 288, 327, 357, 720, 773, 807, 874
BstNI	CCWGG	2 cut(s)	200, 816
BstNSI	RCATGY	2 cut(s)	424, 682
BstSCI	CCNGG	2 cut(s)	198, 814
BstSFI	CTRYAG	1 cut(s)	783
BstSLI	GKGCMC	2 cut(s)	655, 716
BstV1I	GCAGC	3 cut(s)	291, 832, 889
BstV2I	GAAGAC	2 cut(s)	60, 300
BsuRI	GGCC	3 cut(s)	810, 838, 860
BtgI	CCRYGG	1 cut(s)	854
BtrI	CACGTC	2 cut(s)	193, 369
BtsCI	GGATG	1 cut(s)	740
BtsI	GCAGTG	1 cut(s)	771
BtsIMutI	CAGTG	2 cut(s)	153, 771
BveI	ACCTGC	3 cut(s)	907, 913, 919
Cac8I	GCNNGC	1 cut(s)	323
CfoI	GCGC	2 cut(s)	279, 506
Cfr13I	GGNCC	1 cut(s)	858
CspCI	CAANNNNNGTGG	2 cut(s)	495, 530
CviAII	CATG	5 cut(s)	103, 421, 679, 709, 720
DdeI	CTNAG	5 cut(s)	266, 500, 549, 584, 647
DpnI	GATC	3 cut(s)	159, 579, 872
DpnII	GATC	3 cut(s)	157, 577, 870
DraIII	CACNNNGTG	1 cut(s)	711
EaeI	YGGCCR	1 cut(s)	808
Eam1104I	CTCTTC	1 cut(s)	606
EarI	CTCTTC	1 cut(s)	606
EciI	GGCGGA	2 cut(s)	320, 345
Eco130I	CCWWGG	1 cut(s)	393
EcoNI	CCTNNNNNAGG	1 cut(s)	413
EcoRII	CCWGG	2 cut(s)	198, 814
EcoT14I	CCWWGG	1 cut(s)	393
ErhI	CCWWGG	1 cut(s)	393
Esp3I	CGTCTC	1 cut(s)	246
FaeI	CATG	5 cut(s)	106, 424, 682, 712, 723
FaiI	YATR	7 cut(s)	54, 104, 422, 438, 680, 710, 721
FatI	CATG	5 cut(s)	102, 420, 678, 708, 719
FauI	CCCGC	2 cut(s)	263, 882
FbaI	TGATCA	1 cut(s)	577
Fnu4HI	GCNGC	6 cut(s)	204, 280, 358, 361, 821, 878
FokI	GGATG	1 cut(s)	727
Fsp4HI	GCNGC	6 cut(s)	204, 280, 358, 361, 821, 878
FspBI	CTAG	1 cut(s)	762
GlaI	GCGC	2 cut(s)	278, 505
GluI	GCNGC	6 cut(s)	204, 280, 358, 361, 821, 878
HaeIII	GGCC	3 cut(s)	810, 838, 860
HapII	CCGG	2 cut(s)	385, 791
HhaI	GCGC	2 cut(s)	279, 506
Hin1I	GRCGYC	1 cut(s)	170
Hin1II	CATG	5 cut(s)	106, 424, 682, 712, 723
Hin6I	GCGC	2 cut(s)	277, 504
HinP1I	GCGC	2 cut(s)	277, 504
HindIII	AAGCTT	1 cut(s)	659
HinfI	GANTC	5 cut(s)	109, 150, 186, 601, 700
HpaII	CCGG	2 cut(s)	385, 791
HphI	GGTGA	3 cut(s)	17, 382, 697
Hpy166II	GTNNAC	1 cut(s)	196
Hpy188I	TCNGA	3 cut(s)	246, 531, 606
Hpy188III	TCNNGA	2 cut(s)	113, 924
Hpy8I	GTNNAC	1 cut(s)	196
Hpy99I	CGWCG	6 cut(s)	172, 175, 194, 341, 344, 373
HpyAV	CCTTC	1 cut(s)	726
HpyCH4III	ACNGT	5 cut(s)	66, 256, 451, 672, 787
HpyCH4IV	ACGT	3 cut(s)	170, 192, 368
HpyCH4V	TGCA	8 cut(s)	106, 628, 640, 682, 896, 902, 908, 914
HpyF10VI	GCNNNNNNNGC	8 cut(s)	276, 288, 327, 357, 720, 773, 807, 874
HpyF3I	CTNAG	5 cut(s)	266, 500, 549, 584, 647
HpySE526I	ACGT	3 cut(s)	170, 192, 368
Hsp92I	GRCGYC	1 cut(s)	170
Hsp92II	CATG	5 cut(s)	106, 424, 682, 712, 723
HspAI	GCGC	2 cut(s)	277, 504
Ksp22I	TGATCA	1 cut(s)	577
Kzo9I	GATC	3 cut(s)	157, 577, 870
LmnI	GCTCC	4 cut(s)	56, 387, 397, 430
Lsp1109I	GCAGC	3 cut(s)	291, 832, 889
LweI	GCATC	2 cut(s)	883, 889
MaeI	CTAG	1 cut(s)	762
MaeII	ACGT	3 cut(s)	170, 192, 368
MaeIII	GTNAC	1 cut(s)	5
MalI	GATC	3 cut(s)	159, 579, 872
MbiI	CCGCTC	1 cut(s)	270
MboI	GATC	3 cut(s)	157, 577, 870
MhlI	GDGCHC	3 cut(s)	435, 655, 716
MlsI	TGGCCA	1 cut(s)	810
MluCI	AATT	2 cut(s)	460, 479
MluNI	TGGCCA	1 cut(s)	810
MlyI	GAGTC	1 cut(s)	694
Mox20I	TGGCCA	1 cut(s)	810
MscI	TGGCCA	1 cut(s)	810
MslI	CAYNNNNRTG	2 cut(s)	683, 724
Msp20I	TGGCCA	1 cut(s)	810
MspI	CCGG	2 cut(s)	385, 791
MspR9I	CCNGG	2 cut(s)	200, 816
MvaI	CCWGG	2 cut(s)	200, 816
MwoI	GCNNNNNNNGC	8 cut(s)	276, 288, 327, 357, 720, 773, 807, 874
NdeII	GATC	3 cut(s)	157, 577, 870
NlaIII	CATG	5 cut(s)	106, 424, 682, 712, 723
NlaIV	GGNNCC	1 cut(s)	58
NmeAIII	GCCGAG	1 cut(s)	306
NmuCI	GTSAC	1 cut(s)	5
NspI	RCATGY	2 cut(s)	424, 682
PaqCI	CACCTGC	3 cut(s)	907, 913, 919
PasI	CCCWGGG	1 cut(s)	815
PciI	ACATGT	1 cut(s)	420
PcsI	WCGNNNNNNNCGW	2 cut(s)	231, 333
PfeI	GAWTC	4 cut(s)	109, 150, 186, 601
PflMI	CCANNNNNTGG	1 cut(s)	730
PkrI	GCNGC	6 cut(s)	205, 281, 359, 362, 822, 879
PleI	GAGTC	1 cut(s)	694
PpsI	GAGTC	1 cut(s)	694
PscI	ACATGT	1 cut(s)	420
Psp6I	CCWGG	2 cut(s)	198, 814
PspGI	CCWGG	2 cut(s)	198, 814
PspN4I	GGNNCC	1 cut(s)	58
PspPI	GGNCC	1 cut(s)	858
RseI	CAYNNNNRTG	2 cut(s)	683, 724
SatI	GCNGC	6 cut(s)	204, 280, 358, 361, 821, 878
Sau3AI	GATC	3 cut(s)	157, 577, 870
Sau96I	GGNCC	1 cut(s)	858
SchI	GAGTC	1 cut(s)	694
ScrFI	CCNGG	2 cut(s)	200, 816
SduI	GDGCHC	3 cut(s)	435, 655, 716
SfaNI	GCATC	2 cut(s)	883, 889
SfcI	CTRYAG	1 cut(s)	783
SmiMI	CAYNNNNRTG	2 cut(s)	683, 724
SmlI	CTYRAG	2 cut(s)	413, 656
SmoI	CTYRAG	2 cut(s)	413, 656
Sse9I	AATT	2 cut(s)	460, 479
SsiI	CCGC	8 cut(s)	203, 206, 270, 305, 330, 357, 360, 875
SspMI	CTAG	1 cut(s)	762
StyD4I	CCNGG	2 cut(s)	198, 814
StyI	CCWWGG	1 cut(s)	393
TaaI	ACNGT	5 cut(s)	66, 256, 451, 672, 787
TaiI	ACGT	3 cut(s)	173, 195, 371
TaqI	TCGA	7 cut(s)	160, 189, 219, 260, 371, 464, 883
TaqII	GACCGA	1 cut(s)	909
TasI	AATT	2 cut(s)	460, 479
TauI	GCSGC	3 cut(s)	206, 360, 363
TfiI	GAWTC	4 cut(s)	109, 150, 186, 601
TscAI	CASTG	2 cut(s)	160, 778
TseFI	GTSAC	1 cut(s)	5
TseI	GCWGC	3 cut(s)	279, 820, 877
Tsp45I	GTSAC	1 cut(s)	5
TspDTI	ATGAA	2 cut(s)	701, 708
TspRI	CASTG	2 cut(s)	160, 778
Van91I	CCANNNNNTGG	1 cut(s)	730
XagI	CCTNNNNNAGG	1 cut(s)	413
XceI	RCATGY	2 cut(s)	424, 682
XcmI	CCANNNNNNNNNTGG	1 cut(s)	852
XspI	CTAG	1 cut(s)	762
ZraI	GACGTC	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.