AT3G60670

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0014547
Physical Location & Seq
Reverse (-)
22424436 .. 22426369
1934 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G60670.1

Sequence Viewer

Length: 738 bp
ATGGAATCTGGAGAATTTCCTGCATGGCTTGAGGTTCTGTTAAAAGACAAGTTTTTCAACGCTTGTTTGGATCATGAAGATGATAAGAAGAACGAGAAGAACATATTATGTATCGATTGTTGTCTTACCATCTGTCCTCACTGTCTCTCTTCTCATACCTCTCATCGTCTTCTTCAGATAAGAAGATACGTGTATAGAGACGTTTTGAGGGTTGAAGATGGTTCTAAGCTAATGGATTGCTCTTTAATTCAGCCATACACAACGAACAGTTCAAAAGTTGTGTTCATCAATGAACGGCCTCAGTCTCGACAATTTCGTGGTTCCGGTAACATTTGTATCACCTGTGACCGGAGTCTCCAGTCTCCTTACCTCTTCTGCTGTCTCTCCTGCAAGATTAGTGACGTCATAATGAGACAAAGAGGACTCTCAGGGTTTCTCCGCGTCTGCAACGTTCTTGATTTAACCGACGAAGTCACGACAACGACACCGAGTTCCACTCTCGAGCCCACCGGGTCGAACCGAACATCTTCCGAGTCAAGTGGTAACGAAGGAGAAGACATGTTCTGGTGTCAGGCGCTCGCTTGCACCGCCACTACTGAAATCGTTAGGAAGAAAAGAAGCAGCTTGTCGACGACTTGCAGGAGAGTCACGGAGGTGGTTTCAACGACTAACACGGAAGCTCCGGTGAACTTTTTAAACCGTCGGAAGAATCCGCCGCAACGCGCCCCGCTTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
PLATZ

Protein Analysis

245

Amino Acids

27.74

Weight (kDa)

8.13

Isoelectric Point (pI)

60.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 61 - 132 5e-26 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014547)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G60670
fragaria_vesca FvH4_7g11220
malus_domestica MD02G1208800.v1.1 MD07G1117000.v1.1
prunus_persica Prupe.2G140000_v2.0.a1
pyrus_communis pycom07g10810
rosa_chinensis RchiOBHm_Chr1g0349351
rosa_laevigata RLG00000028556
rosa_multiflora Rmu_co8365383.1_g000001 Rmu_sc0031211.1_g000001
rosa_roxburghii Rroxscaffold_4G00305630
rosa_rugosa Rorug01G0202900
rosa_samantha Rh1AG220300 Rh1BG186300 Rh1CG205400 Rh1DG215800
rosa_wichuraiana Rw1G018720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 405
AccI GTMKAC 1 cut(s) 629
AccII CGCG 2 cut(s) 441, 723
AciI CCGC 5 cut(s) 439, 588, 713, 716, 728
AclI AACGTT 1 cut(s) 450
AclWI GGATC 1 cut(s) 78
AcsI RAATTY 1 cut(s) 14
AcuI CTGAAG 1 cut(s) 158
AcyI GRCGYC 1 cut(s) 402
AfiI CCNNNNNNNGG 1 cut(s) 348
AflIII ACRYGT 2 cut(s) 189, 558
AgsI TTSAA 4 cut(s) 58, 215, 273, 663
AleI CACNNNNGTG 1 cut(s) 653
AluBI AGCT 3 cut(s) 229, 624, 680
AluI AGCT 3 cut(s) 229, 624, 680
Alw26I GTCTC 7 cut(s) 149, 192, 309, 359, 366, 386, 406
AlwI GGATC 1 cut(s) 78
Ama87I CYCGRG 1 cut(s) 500
AoxI GGCC 1 cut(s) 296
ApeKI GCWGC 1 cut(s) 621
ApoI RAATTY 1 cut(s) 14
Asp700I GAANNNNTTC 1 cut(s) 526
AspLEI GCGC 2 cut(s) 577, 725
AsuC2I CCSGG 1 cut(s) 511
AsuHPI GGTGA 2 cut(s) 331, 697
AvaI CYCGRG 1 cut(s) 500
BaeI ACNNNNGTAYC 2 cut(s) 319, 352
BanII GRGCYC 1 cut(s) 507
BbsI GAAGAC 2 cut(s) 161, 561
BbvI GCAGC 1 cut(s) 633
BccI CCATC 2 cut(s) 137, 212
BceAI ACGGC 1 cut(s) 311
BcnI CCSGG 1 cut(s) 511
BcoDI GTCTC 7 cut(s) 149, 192, 309, 359, 366, 386, 406
BfoI RGCGCY 1 cut(s) 578
BisI GCNGC 2 cut(s) 622, 716
BlsI GCNGC 2 cut(s) 623, 717
Bme1390I CCNGG 1 cut(s) 511
BmeT110I CYCGRG 1 cut(s) 500
BmiI GGNNCC 1 cut(s) 322
BmrFI CCNGG 1 cut(s) 511
BoxI GACNNNNGTC 1 cut(s) 351
BpiI GAAGAC 2 cut(s) 161, 561
BplI GAGNNNNNCTC 2 cut(s) 481, 513
BpmI CTGGAG 2 cut(s) 30, 341
BpuEI CTTGAG 1 cut(s) 50
BpuMI CCSGG 1 cut(s) 511
Bsa29I ATCGAT 1 cut(s) 114
BsaAI YACGTR 1 cut(s) 190
BsaHI GRCGYC 1 cut(s) 402
BsaWI WCCGGW 3 cut(s) 323, 348, 682
BsaXI ACNNNNNCTCC 2 cut(s) 664, 694
Bsc4I CCNNNNNNNGG 1 cut(s) 348
Bse1I ACTGG 1 cut(s) 358
BseCI ATCGAT 1 cut(s) 114
BseLI CCNNNNNNNGG 1 cut(s) 348
BseMII CTCAG 2 cut(s) 314, 441
BseNI ACTGG 1 cut(s) 358
BseXI GCAGC 1 cut(s) 633
Bsh1236I CGCG 2 cut(s) 441, 723
BshFI GGCC 1 cut(s) 298
BshVI ATCGAT 1 cut(s) 114
BsiHKCI CYCGRG 1 cut(s) 500
BsiSI CCGG 4 cut(s) 324, 349, 510, 683
BslI CCNNNNNNNGG 1 cut(s) 348
BsmAI GTCTC 7 cut(s) 149, 192, 309, 359, 366, 386, 406
BsmBI CGTCTC 1 cut(s) 192
BsnI GGCC 1 cut(s) 298
BsoBI CYCGRG 1 cut(s) 500
Bsp1286I GDGCHC 1 cut(s) 507
Bsp143I GATC 1 cut(s) 70
BspACI CCGC 5 cut(s) 439, 588, 713, 716, 728
BspANI GGCC 1 cut(s) 298
BspCNI CTCAG 2 cut(s) 313, 440
BspDI ATCGAT 1 cut(s) 114
BspFNI CGCG 2 cut(s) 441, 723
BspHI TCATGA 1 cut(s) 73
BspLI GGNNCC 1 cut(s) 322
BspPI GGATC 1 cut(s) 78
BsrI ACTGG 1 cut(s) 358
BssMI GATC 1 cut(s) 70
BssNI GRCGYC 1 cut(s) 402
Bst4CI ACNGT 3 cut(s) 143, 269, 701
Bst6I CTCTTC 2 cut(s) 154, 377
BstACI GRCGYC 1 cut(s) 402
BstBAI YACGTR 1 cut(s) 190
BstC8I GCNNGC 2 cut(s) 579, 583
BstDEI CTNAG 3 cut(s) 225, 300, 427
BstFNI CGCG 2 cut(s) 441, 723
BstH2I RGCGCY 1 cut(s) 578
BstHHI GCGC 2 cut(s) 577, 725
BstKTI GATC 1 cut(s) 73
BstMAI GTCTC 7 cut(s) 149, 192, 309, 359, 366, 386, 406
BstMBI GATC 1 cut(s) 70
BstMWI GCNNNNNNNGC 1 cut(s) 587
BstNSI RCATGY 1 cut(s) 562
BstPAI GACNNNNGTC 1 cut(s) 351
BstSCI CCNGG 1 cut(s) 509
BstUI CGCG 2 cut(s) 441, 723
BstV1I GCAGC 1 cut(s) 633
BstV2I GAAGAC 2 cut(s) 161, 561
Bsu15I ATCGAT 1 cut(s) 114
BsuRI GGCC 1 cut(s) 298
BsuTUI ATCGAT 1 cut(s) 114
BtsIMutI CAGTG 1 cut(s) 139
Cac8I GCNNGC 2 cut(s) 579, 583
CciI TCATGA 1 cut(s) 73
CfoI GCGC 2 cut(s) 577, 725
ClaI ATCGAT 1 cut(s) 114
CseI GACGC 1 cut(s) 430
CviAII CATG 3 cut(s) 24, 74, 559
CviJI RGCY 7 cut(s) 28, 229, 253, 298, 505, 624, 680
CviKI_1 RGCY 7 cut(s) 28, 229, 253, 298, 505, 624, 680
DdeI CTNAG 3 cut(s) 225, 300, 427
DpnI GATC 1 cut(s) 72
DpnII GATC 1 cut(s) 70
DraI TTTAAA 1 cut(s) 696
Eam1104I CTCTTC 2 cut(s) 154, 377
EarI CTCTTC 2 cut(s) 154, 377
EciI GGCGGA 1 cut(s) 702
Eco24I GRGCYC 1 cut(s) 507
Eco57I CTGAAG 1 cut(s) 158
Eco88I CYCGRG 1 cut(s) 500
EcoT38I GRGCYC 1 cut(s) 507
Esp3I CGTCTC 1 cut(s) 192
FaeI CATG 3 cut(s) 27, 77, 562
FaiI YATR 9 cut(s) 25, 75, 104, 109, 156, 195, 256, 407, 560
FatI CATG 3 cut(s) 23, 73, 558
FauI CCCGC 1 cut(s) 735
FblI GTMKAC 1 cut(s) 629
Fnu4HI GCNGC 2 cut(s) 622, 716
FriOI GRGCYC 1 cut(s) 507
Fsp4HI GCNGC 2 cut(s) 622, 716
GlaI GCGC 2 cut(s) 576, 724
GluI GCNGC 2 cut(s) 622, 716
GsuI CTGGAG 2 cut(s) 30, 341
HaeII RGCGCY 1 cut(s) 578
HaeIII GGCC 1 cut(s) 298
HapII CCGG 4 cut(s) 324, 349, 510, 683
HgaI GACGC 1 cut(s) 430
HhaI GCGC 2 cut(s) 577, 725
Hin1I GRCGYC 1 cut(s) 402
Hin1II CATG 3 cut(s) 27, 77, 562
Hin6I GCGC 2 cut(s) 575, 723
HinP1I GCGC 2 cut(s) 575, 723
HincII GTYRAC 1 cut(s) 630
HindII GTYRAC 1 cut(s) 630
HinfI GANTC 6 cut(s) 5, 352, 423, 533, 645, 709
HpaII CCGG 4 cut(s) 324, 349, 510, 683
HphI GGTGA 2 cut(s) 331, 697
Hpy166II GTNNAC 2 cut(s) 630, 688
Hpy188I TCNGA 3 cut(s) 177, 532, 705
Hpy188III TCNNGA 6 cut(s) 9, 74, 306, 455, 475, 500
Hpy8I GTNNAC 2 cut(s) 630, 688
Hpy99I CGWCG 3 cut(s) 470, 634, 705
HpyAV CCTTC 1 cut(s) 542
HpyCH4III ACNGT 3 cut(s) 143, 269, 701
HpyCH4IV ACGT 4 cut(s) 189, 201, 402, 450
HpyCH4V TGCA 5 cut(s) 23, 390, 447, 585, 639
HpyF10VI GCNNNNNNNGC 1 cut(s) 587
HpyF3I CTNAG 3 cut(s) 225, 300, 427
HpySE526I ACGT 4 cut(s) 189, 201, 402, 450
Hsp92I GRCGYC 1 cut(s) 402
Hsp92II CATG 3 cut(s) 27, 77, 562
HspAI GCGC 2 cut(s) 575, 723
Kzo9I GATC 1 cut(s) 70
LmnI GCTCC 1 cut(s) 685
Lsp1109I GCAGC 1 cut(s) 633
MaeII ACGT 4 cut(s) 189, 201, 402, 450
MaeIII GTNAC 6 cut(s) 326, 344, 398, 472, 542, 646
MalI GATC 1 cut(s) 72
MboI GATC 1 cut(s) 70
MhlI GDGCHC 1 cut(s) 507
MluCI AATT 3 cut(s) 14, 246, 311
MlyI GAGTC 4 cut(s) 361, 417, 542, 654
MmeI TCCRAC 1 cut(s) 683
MnlI CCTC 8 cut(s) 25, 147, 169, 201, 309, 380, 413, 646
MroXI GAANNNNTTC 1 cut(s) 526
MseI TTAA 5 cut(s) 41, 245, 461, 695, 736
MslI CAYNNNNRTG 2 cut(s) 78, 653
MspI CCGG 4 cut(s) 324, 349, 510, 683
MspR9I CCNGG 1 cut(s) 511
MvnI CGCG 2 cut(s) 441, 723
MwoI GCNNNNNNNGC 1 cut(s) 587
NciI CCSGG 1 cut(s) 511
NdeII GATC 1 cut(s) 70
NlaIII CATG 3 cut(s) 27, 77, 562
NlaIV GGNNCC 1 cut(s) 322
NmuCI GTSAC 4 cut(s) 344, 398, 472, 646
NspI RCATGY 1 cut(s) 562
OliI CACNNNNGTG 1 cut(s) 653
PaeR7I CTCGAG 1 cut(s) 500
PagI TCATGA 1 cut(s) 73
PciI ACATGT 1 cut(s) 558
PcsI WCGNNNNNNNCGW 1 cut(s) 313
PdmI GAANNNNTTC 1 cut(s) 526
PfeI GAWTC 2 cut(s) 5, 709
PflFI GACNNNGTC 1 cut(s) 470
PkrI GCNGC 2 cut(s) 623, 717
PleI GAGTC 4 cut(s) 360, 417, 541, 653
PpsI GAGTC 4 cut(s) 360, 417, 541, 653
Ppu21I YACGTR 1 cut(s) 190
PscI ACATGT 1 cut(s) 558
PshAI GACNNNNGTC 1 cut(s) 351
Psp1406I AACGTT 1 cut(s) 450
PspN4I GGNNCC 1 cut(s) 322
PsyI GACNNNGTC 1 cut(s) 470
RseI CAYNNNNRTG 2 cut(s) 78, 653
SalI GTCGAC 1 cut(s) 628
SaqAI TTAA 5 cut(s) 41, 245, 461, 695, 736
SatI GCNGC 2 cut(s) 622, 716
Sau3AI GATC 1 cut(s) 70
SchI GAGTC 4 cut(s) 361, 417, 542, 654
ScrFI CCNGG 1 cut(s) 511
SduI GDGCHC 1 cut(s) 507
Sfr274I CTCGAG 1 cut(s) 500
SlaI CTCGAG 1 cut(s) 500
SmiMI CAYNNNNRTG 2 cut(s) 78, 653
SmlI CTYRAG 2 cut(s) 29, 500
SmoI CTYRAG 2 cut(s) 29, 500
Sse9I AATT 3 cut(s) 14, 246, 311
SsiI CCGC 5 cut(s) 439, 588, 713, 716, 728
StyD4I CCNGG 1 cut(s) 509
TaaI ACNGT 3 cut(s) 143, 269, 701
TaiI ACGT 4 cut(s) 192, 204, 405, 453
TaqI TCGA 5 cut(s) 114, 307, 501, 515, 629
TasI AATT 3 cut(s) 14, 246, 311
TauI GCSGC 1 cut(s) 718
TfiI GAWTC 2 cut(s) 5, 709
Tru1I TTAA 5 cut(s) 41, 245, 461, 695, 736
Tru9I TTAA 5 cut(s) 41, 245, 461, 695, 736
TscAI CASTG 1 cut(s) 146
TseFI GTSAC 4 cut(s) 344, 398, 472, 646
TseI GCWGC 1 cut(s) 621
Tsp45I GTSAC 4 cut(s) 344, 398, 472, 646
TspDTI ATGAA 3 cut(s) 90, 274, 306
TspGWI ACGGA 2 cut(s) 665, 689
TspRI CASTG 1 cut(s) 146
Tth111I GACNNNGTC 1 cut(s) 470
XapI RAATTY 1 cut(s) 14
XceI RCATGY 1 cut(s) 562
XhoI CTCGAG 1 cut(s) 500
XmiI GTMKAC 1 cut(s) 629
XmnI GAANNNNTTC 1 cut(s) 526
ZraI GACGTC 1 cut(s) 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.