MD07G1117000.v1.1

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0014547
Physical Location & Seq
Reverse (-)
14225909 .. 14227924
2016 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1117000.v1.1.491

Sequence Viewer

Length: 738 bp
ATGTTTGGTCCTGCAAATCTTCTTCCTCACTGGCTGGAGGTCCTGCTGACTGAGAAATTCTTCAACGCTTGCATAATTCACGAGGAGGCAAAGAAGAACGAGAAGAACGTCTACTGTCTGGACTGTTGCATCAGCCTCTGCCCTCACTGCCTCAACCCCCATACCTCTCACCGACTTTTGCAGATAAGGAGGTATGTGTACAACGATGTCATAAGGTTGGATGATGCTGCCAAGTTATTCGACTGTTCTTCTATTCAATCATACATAACCAACAGTGCAAAAGTGGTATTTTTAAACCAGAGGCCAACAAAGAATTGCAGAGGCTCCGGCAACGTCTGCAGCACCTGTGACAGAAACCTGCAAGACCCATATCTCTTCTGCTCCCTCCACTGCAAGATTGATCACGTTATAAGAACAGAAGGTGGCCTTTCCAAGTATCTCCGCGAGTGCAAGTTCATGGCTTTACCTGAATCCGGTTTAGACGACGGTCTGATGACACCTGACTCGGTTCTCAAACCGGCCGGTTCAACCCGAACCTCGTCTGGGTCTTATGGGTGTGGCGAGGTGAGTTGTTTGGCCTTGGCCTGCACTGCCACGACCGAAATTGTGAGGAAAAAGAGAAGTAACATGGCCGCATATCCGGCTGCTTGTCGACCGGTTTTTTTACCTGTGTCGGAAATCTCAGCCCGGTTGATGAACCGGAGGAAGGGGACTCCACACCGGGCGCCACTGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
PLATZ

Protein Analysis

246

Amino Acids

27.39

Weight (kDa)

8.81

Isoelectric Point (pI)

52.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 63 - 133 1.6e-26 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014547)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G60670
fragaria_vesca FvH4_7g11220
malus_domestica MD02G1208800.v1.1 MD07G1117000.v1.1
prunus_persica Prupe.2G140000_v2.0.a1
pyrus_communis pycom07g10810
rosa_chinensis RchiOBHm_Chr1g0349351
rosa_laevigata RLG00000028556
rosa_multiflora Rmu_co8365383.1_g000001 Rmu_sc0031211.1_g000001
rosa_roxburghii Rroxscaffold_4G00305630
rosa_rugosa Rorug01G0202900
rosa_samantha Rh1AG220300 Rh1BG186300 Rh1CG205400 Rh1DG215800
rosa_wichuraiana Rw1G018720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 410
Acc36I ACCTGC 1 cut(s) 366
AccB1I GGYRCC 1 cut(s) 724
AccI GTMKAC 2 cut(s) 111, 652
AccII CGCG 1 cut(s) 444
AciI CCGC 2 cut(s) 442, 633
AcoI YGGCCR 2 cut(s) 519, 630
AcsI RAATTY 1 cut(s) 56
AcyI GRCGYC 1 cut(s) 725
AfaI GTAC 1 cut(s) 200
AfiI CCNNNNNNNGG 3 cut(s) 473, 543, 706
AgeI ACCGGT 1 cut(s) 655
AgsI TTSAA 3 cut(s) 64, 257, 528
AlwNI CAGNNNCTG 2 cut(s) 138, 345
AoxI GGCC 6 cut(s) 302, 424, 519, 576, 582, 630
ApeKI GCWGC 3 cut(s) 227, 339, 644
ApoI RAATTY 1 cut(s) 56
AsiGI ACCGGT 1 cut(s) 655
Asp700I GAANNNNTTC 1 cut(s) 59
AspLEI GCGC 1 cut(s) 727
AspS9I GGNCC 2 cut(s) 8, 40
AsuC2I CCSGG 2 cut(s) 688, 722
AsuHPI GGTGA 2 cut(s) 161, 577
AvaII GGWCC 2 cut(s) 8, 40
BanI GGYRCC 1 cut(s) 724
BarI GAAGNNNNNNTAC 2 cut(s) 95, 127
BauI CACGAG 1 cut(s) 80
BbvI GCAGC 3 cut(s) 214, 351, 631
BclI TGATCA 1 cut(s) 400
BcnI CCSGG 2 cut(s) 688, 722
BfmI CTRYAG 1 cut(s) 337
BfoI RGCGCY 1 cut(s) 728
BfuAI ACCTGC 1 cut(s) 366
BisI GCNGC 4 cut(s) 228, 340, 633, 645
BlsI GCNGC 4 cut(s) 229, 341, 634, 646
Bme1390I CCNGG 2 cut(s) 688, 722
Bme18I GGWCC 2 cut(s) 8, 40
BmgT120I GGNCC 2 cut(s) 8, 40
BmiI GGNNCC 2 cut(s) 325, 726
BmrFI CCNGG 2 cut(s) 688, 722
BmsI GCATC 2 cut(s) 138, 214
BoxI GACNNNNGTC 1 cut(s) 486
BpmI CTGGAG 1 cut(s) 56
BpuMI CCSGG 2 cut(s) 688, 722
BsaHI GRCGYC 1 cut(s) 725
BsaJI CCNNGG 1 cut(s) 579
BsaWI WCCGGW 3 cut(s) 473, 655, 699
Bsc4I CCNNNNNNNGG 3 cut(s) 473, 543, 706
Bse118I RCCGGY 3 cut(s) 517, 521, 655
Bse1I ACTGG 1 cut(s) 35
BseDI CCNNGG 1 cut(s) 579
BseGI GGATG 1 cut(s) 226
BseLI CCNNNNNNNGG 3 cut(s) 473, 543, 706
BseMII CTCAG 2 cut(s) 42, 696
BseNI ACTGG 1 cut(s) 35
BseRI GAGGAG 1 cut(s) 98
BseX3I CGGCCG 1 cut(s) 519
BseXI GCAGC 3 cut(s) 214, 351, 631
BsgI GTGCAG 1 cut(s) 571
Bsh1236I CGCG 1 cut(s) 444
Bsh1285I CGRYCG 3 cut(s) 522, 600, 656
BshFI GGCC 6 cut(s) 304, 426, 521, 578, 584, 632
BshNI GGYRCC 1 cut(s) 724
BshTI ACCGGT 1 cut(s) 655
BsiEI CGRYCG 3 cut(s) 522, 600, 656
BsiSI CCGG 9 cut(s) 327, 474, 518, 522, 641, 656, 688, 700, 721
BslFI GGGAC 1 cut(s) 724
BslI CCNNNNNNNGG 3 cut(s) 473, 543, 706
BsmFI GGGAC 1 cut(s) 724
BsnI GGCC 6 cut(s) 304, 426, 521, 578, 584, 632
Bsp1407I TGTACA 1 cut(s) 198
Bsp143I GATC 1 cut(s) 400
BspACI CCGC 2 cut(s) 442, 633
BspANI GGCC 6 cut(s) 304, 426, 521, 578, 584, 632
BspCNI CTCAG 2 cut(s) 43, 695
BspFNI CGCG 1 cut(s) 444
BspLI GGNNCC 2 cut(s) 325, 726
BspMAI CTGCAG 1 cut(s) 341
BspMI ACCTGC 1 cut(s) 366
BspT107I GGYRCC 1 cut(s) 724
BsrFI RCCGGY 3 cut(s) 517, 521, 655
BsrGI TGTACA 1 cut(s) 198
BsrI ACTGG 1 cut(s) 35
BssAI RCCGGY 3 cut(s) 517, 521, 655
BssECI CCNNGG 1 cut(s) 579
BssMI GATC 1 cut(s) 400
BssNI GRCGYC 1 cut(s) 725
BssSI CACGAG 1 cut(s) 80
BssT1I CCWWGG 1 cut(s) 579
Bst2BI CACGAG 1 cut(s) 80
Bst4CI ACNGT 6 cut(s) 116, 125, 245, 275, 488, 732
Bst6I CTCTTC 1 cut(s) 380
BstACI GRCGYC 1 cut(s) 725
BstAPI GCANNNNNTGC 1 cut(s) 336
BstAUI TGTACA 1 cut(s) 198
BstC8I GCNNGC 2 cut(s) 70, 586
BstDEI CTNAG 2 cut(s) 51, 682
BstF5I GGATG 1 cut(s) 226
BstFNI CGCG 1 cut(s) 444
BstH2I RGCGCY 1 cut(s) 728
BstHHI GCGC 1 cut(s) 727
BstKTI GATC 1 cut(s) 403
BstMBI GATC 1 cut(s) 400
BstMCI CGRYCG 3 cut(s) 522, 600, 656
BstMWI GCNNNNNNNGC 4 cut(s) 147, 336, 590, 641
BstPAI GACNNNNGTC 1 cut(s) 486
BstSCI CCNGG 2 cut(s) 686, 720
BstSFI CTRYAG 1 cut(s) 337
BstUI CGCG 1 cut(s) 444
BstV1I GCAGC 3 cut(s) 214, 351, 631
BstZI CGGCCG 1 cut(s) 519
BsuRI GGCC 6 cut(s) 304, 426, 521, 578, 584, 632
BtsCI GGATG 1 cut(s) 226
BtsI GCAGTG 3 cut(s) 145, 388, 588
BtsIMutI CAGTG 6 cut(s) 28, 145, 280, 388, 588, 728
BveI ACCTGC 1 cut(s) 366
Cac8I GCNNGC 2 cut(s) 70, 586
CaiI CAGNNNCTG 2 cut(s) 138, 345
CfoI GCGC 1 cut(s) 727
Cfr10I RCCGGY 3 cut(s) 517, 521, 655
Cfr13I GGNCC 2 cut(s) 8, 40
Csp6I GTAC 1 cut(s) 199
CspAI ACCGGT 1 cut(s) 655
CviAII CATG 2 cut(s) 457, 628
CviQI GTAC 1 cut(s) 199
DdeI CTNAG 2 cut(s) 51, 682
DinI GGCGCC 1 cut(s) 726
DpnI GATC 1 cut(s) 402
DpnII GATC 1 cut(s) 400
DraI TTTAAA 1 cut(s) 294
EaeI YGGCCR 2 cut(s) 519, 630
EagI CGGCCG 1 cut(s) 519
Eam1104I CTCTTC 1 cut(s) 380
EarI CTCTTC 1 cut(s) 380
EclXI CGGCCG 1 cut(s) 519
Eco130I CCWWGG 1 cut(s) 579
Eco47I GGWCC 2 cut(s) 8, 40
Eco52I CGGCCG 1 cut(s) 519
EcoO109I RGGNCCY 1 cut(s) 40
EcoT14I CCWWGG 1 cut(s) 579
EgeI GGCGCC 1 cut(s) 726
EheI GGCGCC 1 cut(s) 726
ErhI CCWWGG 1 cut(s) 579
FaeI CATG 2 cut(s) 460, 631
FalI AAGNNNNNCTT 2 cut(s) 411, 443
FaqI GGGAC 1 cut(s) 724
FatI CATG 2 cut(s) 456, 627
FbaI TGATCA 1 cut(s) 400
FblI GTMKAC 2 cut(s) 111, 652
Fnu4HI GCNGC 4 cut(s) 228, 340, 633, 645
FokI GGATG 1 cut(s) 233
Fsp4HI GCNGC 4 cut(s) 228, 340, 633, 645
GlaI GCGC 1 cut(s) 726
GluI GCNGC 4 cut(s) 228, 340, 633, 645
GsuI CTGGAG 1 cut(s) 56
HaeII RGCGCY 1 cut(s) 728
HaeIII GGCC 6 cut(s) 304, 426, 521, 578, 584, 632
HapII CCGG 9 cut(s) 327, 474, 518, 522, 641, 656, 688, 700, 721
HhaI GCGC 1 cut(s) 727
Hin1I GRCGYC 1 cut(s) 725
Hin1II CATG 2 cut(s) 460, 631
Hin6I GCGC 1 cut(s) 725
HinP1I GCGC 1 cut(s) 725
HincII GTYRAC 1 cut(s) 653
HindII GTYRAC 1 cut(s) 653
HinfI GANTC 3 cut(s) 470, 503, 712
HpaII CCGG 9 cut(s) 327, 474, 518, 522, 641, 656, 688, 700, 721
HphI GGTGA 2 cut(s) 161, 577
Hpy166II GTNNAC 3 cut(s) 112, 199, 653
Hpy188I TCNGA 2 cut(s) 492, 676
Hpy188III TCNNGA 2 cut(s) 80, 119
Hpy8I GTNNAC 3 cut(s) 112, 199, 653
Hpy99I CGWCG 1 cut(s) 488
HpyAV CCTTC 2 cut(s) 413, 700
HpyCH4III ACNGT 6 cut(s) 116, 125, 245, 275, 488, 732
HpyCH4IV ACGT 3 cut(s) 108, 333, 405
HpyF10VI GCNNNNNNNGC 4 cut(s) 147, 336, 590, 641
HpyF3I CTNAG 2 cut(s) 51, 682
HpySE526I ACGT 3 cut(s) 108, 333, 405
Hsp92I GRCGYC 1 cut(s) 725
Hsp92II CATG 2 cut(s) 460, 631
HspAI GCGC 1 cut(s) 725
KasI GGCGCC 1 cut(s) 724
Ksp22I TGATCA 1 cut(s) 400
Kzo9I GATC 1 cut(s) 400
LmnI GCTCC 2 cut(s) 329, 386
Lsp1109I GCAGC 3 cut(s) 214, 351, 631
LweI GCATC 2 cut(s) 138, 214
MaeII ACGT 3 cut(s) 108, 333, 405
MaeIII GTNAC 2 cut(s) 347, 623
MalI GATC 1 cut(s) 402
MboI GATC 1 cut(s) 400
MboII GAAGA 7 cut(s) 11, 14, 52, 106, 115, 240, 367
MluCI AATT 4 cut(s) 56, 75, 313, 603
Mly113I GGCGCC 1 cut(s) 725
MlyI GAGTC 2 cut(s) 497, 706
MmeI TCCRAC 2 cut(s) 198, 654
MroXI GAANNNNTTC 1 cut(s) 59
MseI TTAA 1 cut(s) 293
MspI CCGG 9 cut(s) 327, 474, 518, 522, 641, 656, 688, 700, 721
MspR9I CCNGG 2 cut(s) 688, 722
MvnI CGCG 1 cut(s) 444
MwoI GCNNNNNNNGC 4 cut(s) 147, 336, 590, 641
NarI GGCGCC 1 cut(s) 725
NciI CCSGG 2 cut(s) 688, 722
NdeII GATC 1 cut(s) 400
NlaIII CATG 2 cut(s) 460, 631
NlaIV GGNNCC 2 cut(s) 325, 726
NmuCI GTSAC 1 cut(s) 347
PcsI WCGNNNNNNNCGW 1 cut(s) 105
PdmI GAANNNNTTC 1 cut(s) 59
PfeI GAWTC 1 cut(s) 470
PinAI ACCGGT 1 cut(s) 655
PkrI GCNGC 4 cut(s) 229, 341, 634, 646
PleI GAGTC 2 cut(s) 497, 706
PluTI GGCGCC 1 cut(s) 728
PpsI GAGTC 2 cut(s) 497, 706
PpuMI RGGWCCY 1 cut(s) 40
PshAI GACNNNNGTC 1 cut(s) 486
PsiI TTATAA 1 cut(s) 410
Psp5II RGGWCCY 1 cut(s) 40
PspN4I GGNNCC 2 cut(s) 325, 726
PspPI GGNCC 2 cut(s) 8, 40
PspPPI RGGWCCY 1 cut(s) 40
PstI CTGCAG 1 cut(s) 341
PstNI CAGNNNCTG 2 cut(s) 138, 345
RsaI GTAC 1 cut(s) 200
RsaNI GTAC 1 cut(s) 199
SalI GTCGAC 1 cut(s) 651
SaqAI TTAA 1 cut(s) 293
SatI GCNGC 4 cut(s) 228, 340, 633, 645
Sau3AI GATC 1 cut(s) 400
Sau96I GGNCC 2 cut(s) 8, 40
SchI GAGTC 2 cut(s) 497, 706
ScrFI CCNGG 2 cut(s) 688, 722
SfaNI GCATC 2 cut(s) 138, 214
SfcI CTRYAG 1 cut(s) 337
SfoI GGCGCC 1 cut(s) 726
SinI GGWCC 2 cut(s) 8, 40
Sse9I AATT 4 cut(s) 56, 75, 313, 603
SsiI CCGC 2 cut(s) 442, 633
SspDI GGCGCC 1 cut(s) 724
StyD4I CCNGG 2 cut(s) 686, 720
StyI CCWWGG 1 cut(s) 579
TaaI ACNGT 6 cut(s) 116, 125, 245, 275, 488, 732
TaiI ACGT 3 cut(s) 111, 336, 408
TaqI TCGA 2 cut(s) 240, 652
TaqII GACCGA 1 cut(s) 614
TasI AATT 4 cut(s) 56, 75, 313, 603
TatI WGTACW 1 cut(s) 198
TauI GCSGC 1 cut(s) 635
TfiI GAWTC 1 cut(s) 470
Tru1I TTAA 1 cut(s) 293
Tru9I TTAA 1 cut(s) 293
TscAI CASTG 6 cut(s) 35, 152, 280, 395, 595, 735
TseFI GTSAC 1 cut(s) 347
TseI GCWGC 3 cut(s) 227, 339, 644
Tsp45I GTSAC 1 cut(s) 347
TspDTI ATGAA 2 cut(s) 445, 710
TspRI CASTG 6 cut(s) 35, 152, 280, 395, 595, 735
VpaK11BI GGWCC 2 cut(s) 8, 40
XapI RAATTY 1 cut(s) 56
XmiI GTMKAC 2 cut(s) 111, 652
XmnI GAANNNNTTC 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.