FvH4_7g11220

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0014547
Physical Location & Seq
Reverse (-)
10456583 .. 10458756
2174 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g11220.t1

Sequence Viewer

Length: 735 bp
ATGATTGTCCCTTCAAATCTTCTACCTTCCTGGCTTGCCGTTCTGCTCTCTGAGAAGTTCTTCAACGCTTGCATAATTCATGAGGAGGAGAGGAAGAACGAGAAGAACATTTACTGCTTGGATTGTTGCATCAGTTTATGCCCTCACTGTTTCGACCCTCACCAATCTCATAGACTCTTAAAGATAAGAAGATATGTTTACCAAGATGTTGTAAAGCTAAGTGATGCTGCCAAGTTGATCGACTGTGCTTTGGTTCAATCATACACATCCAACGGTGCAAAGGTGGTGTTTCTAAACCAGAGGCAACTGCCAAAGAATTACAGAAGCCACGGCAAAGTGTGTATTACCTGTGACAGAAACCTGCAAGACGCTTATCTCTATTGCTCACTATCCTGCAAGATTGATCACGTTATACAAACAGAAGGTGGTCTGTCGCAGTATCTTCGTGAGTGCAATTCCATGGCTCCACCGGACCCTAATTCAGACGACGGTTTGCGGACTCCCAACTCGGTTCTTGAACCGGCCGGTTCGGCGACGTCAGTCCGAACCTCCTCCGGTTCTGGAGGCTACGGCGAATTGGGTTGCATGTCCTTGGCATGTACAGCTACGACAGAGATTGTGAGGAAAAAGAGAAGCAGCTTATTAAGGGCGGCATGCCGGCCGGTTATTTCACCGGTGTTGGAAATCTCAGCCGGCCGGAAAAAGGGTACTCCTCACCGGGCTCCGCTTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
PLATZ

Protein Analysis

245

Amino Acids

27.0

Weight (kDa)

8.79

Isoelectric Point (pI)

59.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 63 - 134 4.2e-24 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014547)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G60670
fragaria_vesca FvH4_7g11220
malus_domestica MD02G1208800.v1.1 MD07G1117000.v1.1
prunus_persica Prupe.2G140000_v2.0.a1
pyrus_communis pycom07g10810
rosa_chinensis RchiOBHm_Chr1g0349351
rosa_laevigata RLG00000028556
rosa_multiflora Rmu_co8365383.1_g000001 Rmu_sc0031211.1_g000001
rosa_roxburghii Rroxscaffold_4G00305630
rosa_rugosa Rorug01G0202900
rosa_samantha Rh1AG220300 Rh1BG186300 Rh1CG205400 Rh1DG215800
rosa_wichuraiana Rw1G018720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 539
Acc36I ACCTGC 1 cut(s) 369
AciI CCGC 3 cut(s) 496, 650, 725
AcoI YGGCCR 3 cut(s) 522, 659, 694
AcyI GRCGYC 1 cut(s) 536
AfaI GTAC 2 cut(s) 601, 709
AfiI CCNNNNNNNGG 1 cut(s) 703
AgeI ACCGGT 1 cut(s) 673
AgsI TTSAA 4 cut(s) 15, 64, 257, 518
AjnI CCWGG 1 cut(s) 29
AluBI AGCT 3 cut(s) 217, 605, 639
AluI AGCT 3 cut(s) 217, 605, 639
AoxI GGCC 3 cut(s) 522, 659, 694
ApeKI GCWGC 2 cut(s) 227, 636
AsiGI ACCGGT 1 cut(s) 673
Asp700I GAANNNNTTC 1 cut(s) 59
AspS9I GGNCC 1 cut(s) 472
AsuC2I CCSGG 1 cut(s) 719
AsuHPI GGTGA 3 cut(s) 152, 663, 707
AvaII GGWCC 1 cut(s) 472
BanII GRGCYC 1 cut(s) 724
BarI GAAGNNNNNNTAC 2 cut(s) 95, 127
BbvI GCAGC 2 cut(s) 214, 648
BceAI ACGGC 3 cut(s) 23, 346, 586
BcgI CGANNNNNNTGC 2 cut(s) 425, 459
BciT130I CCWGG 1 cut(s) 31
BclI TGATCA 1 cut(s) 403
BcnI CCSGG 1 cut(s) 719
BfuAI ACCTGC 1 cut(s) 369
BglI GCCNNNNNGGC 1 cut(s) 530
BisI GCNGC 3 cut(s) 228, 637, 651
BlsI GCNGC 3 cut(s) 229, 638, 652
Bme1390I CCNGG 2 cut(s) 31, 719
Bme18I GGWCC 1 cut(s) 472
BmgT120I GGNCC 1 cut(s) 472
BmiI GGNNCC 3 cut(s) 465, 474, 723
BmrFI CCNGG 2 cut(s) 31, 719
BmsI GCATC 2 cut(s) 138, 214
BoxI GACNNNNGTC 1 cut(s) 539
BpmI CTGGAG 1 cut(s) 582
BpuMI CCSGG 1 cut(s) 719
BsaHI GRCGYC 1 cut(s) 536
BsaJI CCNNGG 3 cut(s) 328, 459, 591
BsaWI WCCGGW 3 cut(s) 469, 554, 673
Bsc4I CCNNNNNNNGG 1 cut(s) 703
Bse118I RCCGGY 6 cut(s) 520, 524, 657, 661, 673, 692
BseBI CCWGG 1 cut(s) 31
BseDI CCNNGG 3 cut(s) 328, 459, 591
BseGI GGATG 1 cut(s) 266
BseLI CCNNNNNNNGG 1 cut(s) 703
BseMII CTCAG 2 cut(s) 42, 702
BseRI GAGGAG 4 cut(s) 98, 101, 541, 702
BseX3I CGGCCG 3 cut(s) 522, 659, 694
BseXI GCAGC 2 cut(s) 214, 648
Bsh1285I CGRYCG 3 cut(s) 525, 662, 697
BshFI GGCC 3 cut(s) 524, 661, 696
BshTI ACCGGT 1 cut(s) 673
BsiEI CGRYCG 3 cut(s) 525, 662, 697
BslI CCNNNNNNNGG 1 cut(s) 703
BsnI GGCC 3 cut(s) 524, 661, 696
Bsp1286I GDGCHC 1 cut(s) 724
Bsp1407I TGTACA 1 cut(s) 599
Bsp143I GATC 2 cut(s) 237, 403
Bsp19I CCATGG 1 cut(s) 459
BspACI CCGC 3 cut(s) 496, 650, 725
BspANI GGCC 3 cut(s) 524, 661, 696
BspCNI CTCAG 2 cut(s) 43, 701
BspHI TCATGA 1 cut(s) 79
BspLI GGNNCC 3 cut(s) 465, 474, 723
BspMI ACCTGC 1 cut(s) 369
BsrFI RCCGGY 6 cut(s) 520, 524, 657, 661, 673, 692
BsrGI TGTACA 1 cut(s) 599
BssAI RCCGGY 6 cut(s) 520, 524, 657, 661, 673, 692
BssECI CCNNGG 3 cut(s) 328, 459, 591
BssMI GATC 2 cut(s) 237, 403
BssNI GRCGYC 1 cut(s) 536
BssT1I CCWWGG 2 cut(s) 459, 591
Bst2UI CCWGG 1 cut(s) 31
Bst4CI ACNGT 4 cut(s) 149, 245, 275, 491
BstACI GRCGYC 1 cut(s) 536
BstAUI TGTACA 1 cut(s) 599
BstC8I GCNNGC 5 cut(s) 36, 70, 655, 659, 694
BstDEI CTNAG 3 cut(s) 51, 218, 688
BstDSI CCRYGG 2 cut(s) 328, 459
BstF5I GGATG 1 cut(s) 266
BstKTI GATC 2 cut(s) 240, 406
BstMBI GATC 2 cut(s) 237, 403
BstMCI CGRYCG 3 cut(s) 525, 662, 697
BstMWI GCNNNNNNNGC 2 cut(s) 530, 602
BstNI CCWGG 1 cut(s) 31
BstNSI RCATGY 3 cut(s) 589, 600, 657
BstPAI GACNNNNGTC 1 cut(s) 539
BstSCI CCNGG 2 cut(s) 29, 717
BstV1I GCAGC 2 cut(s) 214, 648
BstZI CGGCCG 3 cut(s) 522, 659, 694
BsuRI GGCC 3 cut(s) 524, 661, 696
BtgI CCRYGG 2 cut(s) 328, 459
BtsCI GGATG 1 cut(s) 266
BtsIMutI CAGTG 1 cut(s) 145
BveI ACCTGC 1 cut(s) 369
Cac8I GCNNGC 5 cut(s) 36, 70, 655, 659, 694
CciI TCATGA 1 cut(s) 79
Cfr10I RCCGGY 6 cut(s) 520, 524, 657, 661, 673, 692
Cfr13I GGNCC 1 cut(s) 472
CseI GACGC 1 cut(s) 377
Csp6I GTAC 2 cut(s) 600, 708
CspAI ACCGGT 1 cut(s) 673
CviAII CATG 5 cut(s) 80, 460, 586, 597, 654
CviQI GTAC 2 cut(s) 600, 708
DdeI CTNAG 3 cut(s) 51, 218, 688
DpnI GATC 2 cut(s) 239, 405
DpnII GATC 2 cut(s) 237, 403
EaeI YGGCCR 3 cut(s) 522, 659, 694
EagI CGGCCG 3 cut(s) 522, 659, 694
EclXI CGGCCG 3 cut(s) 522, 659, 694
Eco130I CCWWGG 2 cut(s) 459, 591
Eco24I GRGCYC 1 cut(s) 724
Eco47I GGWCC 1 cut(s) 472
Eco52I CGGCCG 3 cut(s) 522, 659, 694
EcoRII CCWGG 1 cut(s) 29
EcoT14I CCWWGG 2 cut(s) 459, 591
EcoT38I GRGCYC 1 cut(s) 724
ErhI CCWWGG 2 cut(s) 459, 591
FaeI CATG 5 cut(s) 83, 463, 589, 600, 657
FatI CATG 5 cut(s) 79, 459, 585, 596, 653
FbaI TGATCA 1 cut(s) 403
Fnu4HI GCNGC 3 cut(s) 228, 637, 651
FokI GGATG 1 cut(s) 253
FriOI GRGCYC 1 cut(s) 724
Fsp4HI GCNGC 3 cut(s) 228, 637, 651
GluI GCNGC 3 cut(s) 228, 637, 651
GsuI CTGGAG 1 cut(s) 582
HaeIII GGCC 3 cut(s) 524, 661, 696
HgaI GACGC 1 cut(s) 377
Hin1I GRCGYC 1 cut(s) 536
Hin1II CATG 5 cut(s) 83, 463, 589, 600, 657
HinfI GANTC 2 cut(s) 174, 499
HphI GGTGA 3 cut(s) 152, 663, 707
Hpy166II GTNNAC 1 cut(s) 199
Hpy188I TCNGA 3 cut(s) 52, 484, 545
Hpy188III TCNNGA 4 cut(s) 80, 446, 515, 561
Hpy8I GTNNAC 1 cut(s) 199
Hpy99I CGWCG 2 cut(s) 491, 538
HpyAV CCTTC 3 cut(s) 21, 36, 416
HpyCH4III ACNGT 4 cut(s) 149, 245, 275, 491
HpyCH4IV ACGT 2 cut(s) 408, 536
HpyCH4V TGCA 7 cut(s) 72, 129, 278, 364, 396, 453, 585
HpyF10VI GCNNNNNNNGC 2 cut(s) 530, 602
HpyF3I CTNAG 3 cut(s) 51, 218, 688
HpySE526I ACGT 2 cut(s) 408, 536
Hsp92I GRCGYC 1 cut(s) 536
Hsp92II CATG 5 cut(s) 83, 463, 589, 600, 657
KroI GCCGGC 2 cut(s) 657, 692
KroNI GCCGGC 2 cut(s) 659, 694
Ksp22I TGATCA 1 cut(s) 403
Kzo9I GATC 2 cut(s) 237, 403
LmnI GCTCC 2 cut(s) 469, 727
Lsp1109I GCAGC 2 cut(s) 214, 648
LweI GCATC 2 cut(s) 138, 214
MaeII ACGT 2 cut(s) 408, 536
MaeIII GTNAC 1 cut(s) 350
MalI GATC 2 cut(s) 239, 405
MboI GATC 2 cut(s) 237, 403
MboII GAAGA 6 cut(s) 11, 52, 106, 115, 201, 434
MhlI GDGCHC 1 cut(s) 724
MluCI AATT 5 cut(s) 75, 316, 454, 478, 575
MlyI GAGTC 2 cut(s) 168, 493
MmeI TCCRAC 2 cut(s) 294, 660
MroNI GCCGGC 2 cut(s) 657, 692
MroXI GAANNNNTTC 1 cut(s) 59
MseI TTAA 3 cut(s) 179, 644, 733
MspR9I CCNGG 2 cut(s) 31, 719
MvaI CCWGG 1 cut(s) 31
MwoI GCNNNNNNNGC 2 cut(s) 530, 602
NaeI GCCGGC 2 cut(s) 659, 694
NciI CCSGG 1 cut(s) 719
NcoI CCATGG 1 cut(s) 459
NdeII GATC 2 cut(s) 237, 403
NgoMIV GCCGGC 2 cut(s) 657, 692
NlaIII CATG 5 cut(s) 83, 463, 589, 600, 657
NlaIV GGNNCC 3 cut(s) 465, 474, 723
NmuCI GTSAC 1 cut(s) 350
NspI RCATGY 3 cut(s) 589, 600, 657
PaeI GCATGC 1 cut(s) 657
PagI TCATGA 1 cut(s) 79
PdiI GCCGGC 2 cut(s) 659, 694
PdmI GAANNNNTTC 1 cut(s) 59
PinAI ACCGGT 1 cut(s) 673
PkrI GCNGC 3 cut(s) 229, 638, 652
PleI GAGTC 2 cut(s) 168, 493
PpsI GAGTC 2 cut(s) 168, 493
PshAI GACNNNNGTC 1 cut(s) 539
Psp6I CCWGG 1 cut(s) 29
PspGI CCWGG 1 cut(s) 29
PspN4I GGNNCC 3 cut(s) 465, 474, 723
PspPI GGNCC 1 cut(s) 472
RsaI GTAC 2 cut(s) 601, 709
RsaNI GTAC 2 cut(s) 600, 708
SaqAI TTAA 3 cut(s) 179, 644, 733
SatI GCNGC 3 cut(s) 228, 637, 651
Sau3AI GATC 2 cut(s) 237, 403
Sau96I GGNCC 1 cut(s) 472
SchI GAGTC 2 cut(s) 168, 493
ScrFI CCNGG 2 cut(s) 31, 719
SduI GDGCHC 1 cut(s) 724
SfaNI GCATC 2 cut(s) 138, 214
SgrAI CRCCGGYG 1 cut(s) 673
SinI GGWCC 1 cut(s) 472
SphI GCATGC 1 cut(s) 657
Sse9I AATT 5 cut(s) 75, 316, 454, 478, 575
SsiI CCGC 3 cut(s) 496, 650, 725
StyD4I CCNGG 2 cut(s) 29, 717
StyI CCWWGG 2 cut(s) 459, 591
TaaI ACNGT 4 cut(s) 149, 245, 275, 491
TaiI ACGT 2 cut(s) 411, 539
TaqI TCGA 2 cut(s) 153, 240
TasI AATT 5 cut(s) 75, 316, 454, 478, 575
TatI WGTACW 1 cut(s) 599
TauI GCSGC 1 cut(s) 653
Tru1I TTAA 3 cut(s) 179, 644, 733
Tru9I TTAA 3 cut(s) 179, 644, 733
TscAI CASTG 1 cut(s) 152
TseFI GTSAC 1 cut(s) 350
TseI GCWGC 2 cut(s) 227, 636
Tsp45I GTSAC 1 cut(s) 350
TspDTI ATGAA 2 cut(s) 68, 719
TspRI CASTG 1 cut(s) 152
VpaK11BI GGWCC 1 cut(s) 472
XceI RCATGY 3 cut(s) 589, 600, 657
XmnI GAANNNNTTC 1 cut(s) 59
ZraI GACGTC 1 cut(s) 537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.