MD02G1208800.v1.1

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0014547
Physical Location & Seq
Forward (+)
21452796 .. 21454261
1466 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1208800.v1.1.491

Sequence Viewer

Length: 666 bp
ATGTTTGGTCCTGCAAATCTTCTTCCCCACTGGCTGGAGGTCCTGCTGACTGAGAAGTTCTTCAACGCTTGCATAATTCACGAGGAGGCAAAGAAGAACGAGAAGAACATAAGGAGGTATGTGTACAACGATGTCATAAGGTTGGATGATGCTGCCAAGTTATTTGACTGTTCTTCCATTCAGTCATACATAACCAACAGTGCAAAAGTGGTATTTTTGAACCAGAGGCCACCAACAAAGAATTGCAGAGGCTCCGGCAACGTCTGCATTACCTGTGACAGAAACCTGCAAGACCCCTTTCTCTTCTGCTCCCTCCACTGCAAGATCGATCACGTTATAAGAACAGAAGGTTGCCTTTCCAAGTATCTCCGCGAGTGCAAGTTCATGGCTTTACCTGAATCCGGTTCAGACGACGGTCTGATGACACATGACTCGGTTCTCGAACCCGCCGGTTCAACCCGAAACTCTTCAGGCTCATATGGGTTGGGCGAGGTGGGCTGTTTGGCCTTAGCTTGCACTGCCACTACTGAAATTGTGAGGAAAAAGAGAAGTAACATGTCGGCATATCGGGCTGCTTGTCGGCCGGTTTTTTCACCCGTGTTGGAAATCTCGGCCGGGTTGATGAACCGGAGGAAGGGGACTCCACACCGGGCGCCGCTGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
PLATZ

Protein Analysis

222

Amino Acids

24.67

Weight (kDa)

8.82

Isoelectric Point (pI)

58.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 38 - 109 1.2e-27 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014547)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G60670
fragaria_vesca FvH4_7g11220
malus_domestica MD02G1208800.v1.1 MD07G1117000.v1.1
prunus_persica Prupe.2G140000_v2.0.a1
pyrus_communis pycom07g10810
rosa_chinensis RchiOBHm_Chr1g0349351
rosa_laevigata RLG00000028556
rosa_multiflora Rmu_co8365383.1_g000001 Rmu_sc0031211.1_g000001
rosa_roxburghii Rroxscaffold_4G00305630
rosa_rugosa Rorug01G0202900
rosa_samantha Rh1AG220300 Rh1BG186300 Rh1CG205400 Rh1DG215800
rosa_wichuraiana Rw1G018720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 338
Acc36I ACCTGC 1 cut(s) 294
AccB1I GGYRCC 1 cut(s) 652
AccB7I CCANNNNNTGG 1 cut(s) 34
AccII CGCG 1 cut(s) 372
AciI CCGC 3 cut(s) 370, 447, 656
AcoI YGGCCR 2 cut(s) 581, 612
AcuI CTGAAG 1 cut(s) 453
AcyI GRCGYC 1 cut(s) 653
AfaI GTAC 1 cut(s) 125
AfiI CCNNNNNNNGG 3 cut(s) 34, 401, 634
AflIII ACRYGT 1 cut(s) 555
AgsI TTSAA 3 cut(s) 64, 220, 456
AluBI AGCT 1 cut(s) 512
AluI AGCT 1 cut(s) 512
AoxI GGCC 4 cut(s) 227, 504, 581, 612
ApeKI GCWGC 2 cut(s) 152, 572
Asp700I GAANNNNTTC 2 cut(s) 59, 466
AspLEI GCGC 1 cut(s) 655
AspS9I GGNCC 2 cut(s) 8, 40
AsuC2I CCSGG 2 cut(s) 616, 650
AsuHPI GGTGA 1 cut(s) 585
AvaII GGWCC 2 cut(s) 8, 40
BanI GGYRCC 1 cut(s) 652
BauI CACGAG 1 cut(s) 80
BbvI GCAGC 2 cut(s) 139, 559
BcnI CCSGG 2 cut(s) 616, 650
BfoI RGCGCY 1 cut(s) 656
BfuAI ACCTGC 1 cut(s) 294
BisI GCNGC 3 cut(s) 153, 573, 656
BlsI GCNGC 3 cut(s) 154, 574, 657
Bme1390I CCNGG 2 cut(s) 616, 650
Bme18I GGWCC 2 cut(s) 8, 40
BmgT120I GGNCC 2 cut(s) 8, 40
BmiI GGNNCC 2 cut(s) 253, 654
BmrFI CCNGG 2 cut(s) 616, 650
BmsI GCATC 1 cut(s) 139
BoxI GACNNNNGTC 1 cut(s) 414
BpmI CTGGAG 1 cut(s) 56
Bpu10I CCTNAGC 1 cut(s) 508
BpuMI CCSGG 2 cut(s) 616, 650
Bsa29I ATCGAT 1 cut(s) 327
BsaHI GRCGYC 1 cut(s) 653
BsaWI WCCGGW 2 cut(s) 401, 627
Bsc4I CCNNNNNNNGG 3 cut(s) 34, 401, 634
Bse118I RCCGGY 2 cut(s) 449, 583
Bse1I ACTGG 1 cut(s) 35
BseCI ATCGAT 1 cut(s) 327
BseGI GGATG 1 cut(s) 151
BseLI CCNNNNNNNGG 3 cut(s) 34, 401, 634
BseMII CTCAG 1 cut(s) 42
BseNI ACTGG 1 cut(s) 35
BseRI GAGGAG 1 cut(s) 98
BseX3I CGGCCG 2 cut(s) 581, 612
BseXI GCAGC 2 cut(s) 139, 559
Bsh1236I CGCG 1 cut(s) 372
Bsh1285I CGRYCG 2 cut(s) 584, 615
BshFI GGCC 4 cut(s) 229, 506, 583, 614
BshNI GGYRCC 1 cut(s) 652
BshVI ATCGAT 1 cut(s) 327
BsiEI CGRYCG 2 cut(s) 584, 615
BsiSI CCGG 7 cut(s) 255, 402, 450, 584, 615, 628, 649
BslFI GGGAC 1 cut(s) 652
BslI CCNNNNNNNGG 3 cut(s) 34, 401, 634
BsmFI GGGAC 1 cut(s) 652
BsnI GGCC 4 cut(s) 229, 506, 583, 614
Bsp1407I TGTACA 1 cut(s) 123
Bsp143I GATC 2 cut(s) 324, 328
BspACI CCGC 3 cut(s) 370, 447, 656
BspANI GGCC 4 cut(s) 229, 506, 583, 614
BspCNI CTCAG 1 cut(s) 43
BspDI ATCGAT 1 cut(s) 327
BspFNI CGCG 1 cut(s) 372
BspLI GGNNCC 2 cut(s) 253, 654
BspMI ACCTGC 1 cut(s) 294
BspT107I GGYRCC 1 cut(s) 652
BsrFI RCCGGY 2 cut(s) 449, 583
BsrGI TGTACA 1 cut(s) 123
BsrI ACTGG 1 cut(s) 35
BssAI RCCGGY 2 cut(s) 449, 583
BssMI GATC 2 cut(s) 324, 328
BssNI GRCGYC 1 cut(s) 653
BssSI CACGAG 1 cut(s) 80
Bst2BI CACGAG 1 cut(s) 80
Bst4CI ACNGT 3 cut(s) 170, 200, 416
Bst6I CTCTTC 2 cut(s) 308, 472
BstACI GRCGYC 1 cut(s) 653
BstAPI GCANNNNNTGC 1 cut(s) 264
BstAUI TGTACA 1 cut(s) 123
BstC8I GCNNGC 2 cut(s) 70, 514
BstDEI CTNAG 2 cut(s) 51, 508
BstF5I GGATG 1 cut(s) 151
BstFNI CGCG 1 cut(s) 372
BstH2I RGCGCY 1 cut(s) 656
BstHHI GCGC 1 cut(s) 655
BstKTI GATC 2 cut(s) 327, 331
BstMBI GATC 2 cut(s) 324, 328
BstMCI CGRYCG 2 cut(s) 584, 615
BstMWI GCNNNNNNNGC 4 cut(s) 264, 495, 518, 569
BstNSI RCATGY 1 cut(s) 559
BstPAI GACNNNNGTC 1 cut(s) 414
BstSCI CCNGG 2 cut(s) 614, 648
BstUI CGCG 1 cut(s) 372
BstV1I GCAGC 2 cut(s) 139, 559
BstZI CGGCCG 2 cut(s) 581, 612
Bsu15I ATCGAT 1 cut(s) 327
BsuRI GGCC 4 cut(s) 229, 506, 583, 614
BsuTUI ATCGAT 1 cut(s) 327
BtsCI GGATG 1 cut(s) 151
BtsI GCAGTG 2 cut(s) 316, 516
BtsIMutI CAGTG 4 cut(s) 28, 205, 316, 516
BveI ACCTGC 1 cut(s) 294
Cac8I GCNNGC 2 cut(s) 70, 514
CfoI GCGC 1 cut(s) 655
Cfr10I RCCGGY 2 cut(s) 449, 583
Cfr13I GGNCC 2 cut(s) 8, 40
ClaI ATCGAT 1 cut(s) 327
Csp6I GTAC 1 cut(s) 124
CviAII CATG 3 cut(s) 385, 428, 556
CviQI GTAC 1 cut(s) 124
DdeI CTNAG 2 cut(s) 51, 508
DinI GGCGCC 1 cut(s) 654
DpnI GATC 2 cut(s) 326, 330
DpnII GATC 2 cut(s) 324, 328
EaeI YGGCCR 2 cut(s) 581, 612
EagI CGGCCG 2 cut(s) 581, 612
Eam1104I CTCTTC 2 cut(s) 308, 472
EarI CTCTTC 2 cut(s) 308, 472
EclXI CGGCCG 2 cut(s) 581, 612
Eco47I GGWCC 2 cut(s) 8, 40
Eco52I CGGCCG 2 cut(s) 581, 612
Eco57I CTGAAG 1 cut(s) 453
EcoO109I RGGNCCY 1 cut(s) 40
EgeI GGCGCC 1 cut(s) 654
EheI GGCGCC 1 cut(s) 654
FaeI CATG 3 cut(s) 388, 431, 559
FalI AAGNNNNNCTT 2 cut(s) 339, 371
FaqI GGGAC 1 cut(s) 652
FatI CATG 3 cut(s) 384, 427, 555
FauI CCCGC 1 cut(s) 454
FauNDI CATATG 1 cut(s) 478
Fnu4HI GCNGC 3 cut(s) 153, 573, 656
FokI GGATG 1 cut(s) 158
Fsp4HI GCNGC 3 cut(s) 153, 573, 656
GlaI GCGC 1 cut(s) 654
GluI GCNGC 3 cut(s) 153, 573, 656
GsuI CTGGAG 1 cut(s) 56
HaeII RGCGCY 1 cut(s) 656
HaeIII GGCC 4 cut(s) 229, 506, 583, 614
HapII CCGG 7 cut(s) 255, 402, 450, 584, 615, 628, 649
HhaI GCGC 1 cut(s) 655
Hin1I GRCGYC 1 cut(s) 653
Hin1II CATG 3 cut(s) 388, 431, 559
Hin6I GCGC 1 cut(s) 653
HinP1I GCGC 1 cut(s) 653
HinfI GANTC 3 cut(s) 398, 431, 640
HpaII CCGG 7 cut(s) 255, 402, 450, 584, 615, 628, 649
HphI GGTGA 1 cut(s) 585
Hpy166II GTNNAC 1 cut(s) 124
Hpy188I TCNGA 2 cut(s) 409, 420
Hpy188III TCNNGA 2 cut(s) 80, 440
Hpy8I GTNNAC 1 cut(s) 124
Hpy99I CGWCG 1 cut(s) 416
HpyAV CCTTC 2 cut(s) 341, 628
HpyCH4III ACNGT 3 cut(s) 170, 200, 416
HpyCH4IV ACGT 2 cut(s) 261, 333
HpyCH4V TGCA 9 cut(s) 14, 72, 203, 246, 267, 289, 321, 378, 516
HpyF10VI GCNNNNNNNGC 4 cut(s) 264, 495, 518, 569
HpyF3I CTNAG 2 cut(s) 51, 508
HpySE526I ACGT 2 cut(s) 261, 333
Hsp92I GRCGYC 1 cut(s) 653
Hsp92II CATG 3 cut(s) 388, 431, 559
HspAI GCGC 1 cut(s) 653
KasI GGCGCC 1 cut(s) 652
Kzo9I GATC 2 cut(s) 324, 328
LmnI GCTCC 2 cut(s) 257, 314
Lsp1109I GCAGC 2 cut(s) 139, 559
LweI GCATC 1 cut(s) 139
MaeII ACGT 2 cut(s) 261, 333
MaeIII GTNAC 2 cut(s) 275, 551
MalI GATC 2 cut(s) 326, 330
MboI GATC 2 cut(s) 324, 328
MboII GAAGA 8 cut(s) 11, 14, 52, 106, 115, 165, 295, 459
MluCI AATT 3 cut(s) 75, 241, 531
Mly113I GGCGCC 1 cut(s) 653
MlyI GAGTC 2 cut(s) 425, 634
MmeI TCCRAC 2 cut(s) 123, 582
MroXI GAANNNNTTC 2 cut(s) 59, 466
MspA1I CMGCKG 1 cut(s) 658
MspI CCGG 7 cut(s) 255, 402, 450, 584, 615, 628, 649
MspR9I CCNGG 2 cut(s) 616, 650
MvnI CGCG 1 cut(s) 372
MwoI GCNNNNNNNGC 4 cut(s) 264, 495, 518, 569
NarI GGCGCC 1 cut(s) 653
NciI CCSGG 2 cut(s) 616, 650
NdeI CATATG 1 cut(s) 478
NdeII GATC 2 cut(s) 324, 328
NlaIII CATG 3 cut(s) 388, 431, 559
NlaIV GGNNCC 2 cut(s) 253, 654
NmeAIII GCCGAG 1 cut(s) 590
NmuCI GTSAC 1 cut(s) 275
NspI RCATGY 1 cut(s) 559
PciI ACATGT 1 cut(s) 555
PdmI GAANNNNTTC 2 cut(s) 59, 466
PfeI GAWTC 1 cut(s) 398
PflMI CCANNNNNTGG 1 cut(s) 34
PkrI GCNGC 3 cut(s) 154, 574, 657
PleI GAGTC 2 cut(s) 425, 634
PluTI GGCGCC 1 cut(s) 656
PpsI GAGTC 2 cut(s) 425, 634
PpuMI RGGWCCY 1 cut(s) 40
PscI ACATGT 1 cut(s) 555
PshAI GACNNNNGTC 1 cut(s) 414
PsiI TTATAA 1 cut(s) 338
Psp5II RGGWCCY 1 cut(s) 40
PspN4I GGNNCC 2 cut(s) 253, 654
PspPI GGNCC 2 cut(s) 8, 40
PspPPI RGGWCCY 1 cut(s) 40
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
SatI GCNGC 3 cut(s) 153, 573, 656
Sau3AI GATC 2 cut(s) 324, 328
Sau96I GGNCC 2 cut(s) 8, 40
SchI GAGTC 2 cut(s) 425, 634
ScrFI CCNGG 2 cut(s) 616, 650
SfaNI GCATC 1 cut(s) 139
SfoI GGCGCC 1 cut(s) 654
SinI GGWCC 2 cut(s) 8, 40
Sse9I AATT 3 cut(s) 75, 241, 531
SsiI CCGC 3 cut(s) 370, 447, 656
SspDI GGCGCC 1 cut(s) 652
StyD4I CCNGG 2 cut(s) 614, 648
TaaI ACNGT 3 cut(s) 170, 200, 416
TaiI ACGT 2 cut(s) 264, 336
TaqI TCGA 2 cut(s) 327, 441
TasI AATT 3 cut(s) 75, 241, 531
TatI WGTACW 1 cut(s) 123
TauI GCSGC 1 cut(s) 658
TfiI GAWTC 1 cut(s) 398
TscAI CASTG 4 cut(s) 35, 205, 323, 523
TseFI GTSAC 1 cut(s) 275
TseI GCWGC 2 cut(s) 152, 572
Tsp45I GTSAC 1 cut(s) 275
TspDTI ATGAA 2 cut(s) 373, 638
TspRI CASTG 4 cut(s) 35, 205, 323, 523
Van91I CCANNNNNTGG 1 cut(s) 34
VpaK11BI GGWCC 2 cut(s) 8, 40
XceI RCATGY 1 cut(s) 559
XmnI GAANNNNTTC 2 cut(s) 59, 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.