Rh1CG205400

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0014547
Physical Location & Seq
Reverse (-)
44634430 .. 44636868
2439 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG205400.1

Sequence Viewer

Length: 537 bp
ATGTTTGTCCCTTCAAATATTCTACCTTCCTGGCTTGCCGTTCTGCTCACTGAGAAGTTCTTCAACGCTTGCATAATTCACGAGGAGGAGAGGAAGAACGAGAAGAACATTTACTGCTTGGACTGTTGCATCAGTTTCTGCCCTCACTGCTTGACCCCTCACCAATCTCACAGACTCTTGAAGATAAGGAGATACGTTTACCATGATGTTATAAAGCTAGATGATGCTTCCAAGTTAATCGACTGTGCTTTGGTTCAATCATACACATCCAACAGTGCAAAGGTGGTGTTTTTAAACCAAAGGCCGCAGACAAAGAATTCCAGAGGCTCCGGCAACGTGTGCAGTACCTGTGACAGAAGCCTGCAAGACCCTTATCTCTATTGTTCTCTCTCTTGCAAGGTTTTAGCTCAACTCAATTCTTCAAAAACCAACGCTCAAATTTTTATTCCAATTTCTCAAAATTTTGTCACACCCTTTTGGATTCTGGACCTTCTCTCAATTGGGTCTCTCTCGTTTTTCAGATTGATCACGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
PLATZ

Protein Analysis

178

Amino Acids

20.34

Weight (kDa)

8.64

Isoelectric Point (pI)

48.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 63 - 134 2.4e-28 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014547)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G60670
fragaria_vesca FvH4_7g11220
malus_domestica MD02G1208800.v1.1 MD07G1117000.v1.1
prunus_persica Prupe.2G140000_v2.0.a1
pyrus_communis pycom07g10810
rosa_chinensis RchiOBHm_Chr1g0349351
rosa_laevigata RLG00000028556
rosa_multiflora Rmu_co8365383.1_g000001 Rmu_sc0031211.1_g000001
rosa_roxburghii Rroxscaffold_4G00305630
rosa_rugosa Rorug01G0202900
rosa_samantha Rh1AG220300 Rh1BG186300 Rh1CG205400 Rh1DG215800
rosa_wichuraiana Rw1G018720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 212
AciI CCGC 1 cut(s) 305
AcsI RAATTY 3 cut(s) 316, 438, 460
AfaI GTAC 1 cut(s) 346
AflIII ACRYGT 1 cut(s) 336
AgsI TTSAA 5 cut(s) 15, 64, 181, 257, 423
AjnI CCWGG 1 cut(s) 29
AluBI AGCT 2 cut(s) 217, 407
AluI AGCT 2 cut(s) 217, 407
Alw26I GTCTC 1 cut(s) 510
AlwNI CAGNNNCTG 2 cut(s) 138, 348
AoxI GGCC 1 cut(s) 302
ApoI RAATTY 3 cut(s) 316, 438, 460
Asp700I GAANNNNTTC 1 cut(s) 59
AspS9I GGNCC 1 cut(s) 487
AsuHPI GGTGA 1 cut(s) 152
AvaII GGWCC 1 cut(s) 487
BarI GAAGNNNNNNTAC 2 cut(s) 95, 127
BauI CACGAG 1 cut(s) 80
BceAI ACGGC 1 cut(s) 23
BciT130I CCWGG 1 cut(s) 31
BclI TGATCA 1 cut(s) 525
BcoDI GTCTC 1 cut(s) 510
BfaI CTAG 1 cut(s) 218
BisI GCNGC 1 cut(s) 305
BlsI GCNGC 1 cut(s) 306
Bme1390I CCNGG 1 cut(s) 31
Bme18I GGWCC 1 cut(s) 487
BmgT120I GGNCC 1 cut(s) 487
BmiI GGNNCC 1 cut(s) 328
BmrFI CCNGG 1 cut(s) 31
BmsI GCATC 2 cut(s) 138, 214
BsaI GGTCTC 1 cut(s) 510
BseBI CCWGG 1 cut(s) 31
BseGI GGATG 1 cut(s) 266
BseMII CTCAG 1 cut(s) 42
BseRI GAGGAG 2 cut(s) 98, 101
BsgI GTGCAG 1 cut(s) 361
BshFI GGCC 1 cut(s) 304
BsiSI CCGG 1 cut(s) 330
BsmAI GTCTC 1 cut(s) 510
BsnI GGCC 1 cut(s) 304
Bso31I GGTCTC 1 cut(s) 510
Bsp143I GATC 1 cut(s) 525
BspACI CCGC 1 cut(s) 305
BspANI GGCC 1 cut(s) 304
BspCNI CTCAG 1 cut(s) 43
BspLI GGNNCC 1 cut(s) 328
BspTNI GGTCTC 1 cut(s) 510
BssMI GATC 1 cut(s) 525
BssSI CACGAG 1 cut(s) 80
Bst2BI CACGAG 1 cut(s) 80
Bst2UI CCWGG 1 cut(s) 31
Bst4CI ACNGT 3 cut(s) 125, 245, 275
BstAPI GCANNNNNTGC 1 cut(s) 339
BstC8I GCNNGC 3 cut(s) 36, 70, 362
BstDEI CTNAG 1 cut(s) 51
BstF5I GGATG 1 cut(s) 266
BstKTI GATC 1 cut(s) 528
BstMAI GTCTC 1 cut(s) 510
BstMBI GATC 1 cut(s) 525
BstMWI GCNNNNNNNGC 2 cut(s) 147, 339
BstNI CCWGG 1 cut(s) 31
BstSCI CCNGG 1 cut(s) 29
BsuRI GGCC 1 cut(s) 304
BtsCI GGATG 1 cut(s) 266
BtsI GCAGTG 1 cut(s) 145
BtsIMutI CAGTG 3 cut(s) 48, 145, 280
Cac8I GCNNGC 3 cut(s) 36, 70, 362
CaiI CAGNNNCTG 2 cut(s) 138, 348
Cfr13I GGNCC 1 cut(s) 487
Csp6I GTAC 1 cut(s) 345
CviAII CATG 1 cut(s) 203
CviJI RGCY 6 cut(s) 34, 217, 304, 327, 360, 407
CviKI_1 RGCY 6 cut(s) 34, 217, 304, 327, 360, 407
CviQI GTAC 1 cut(s) 345
DdeI CTNAG 1 cut(s) 51
DpnI GATC 1 cut(s) 527
DpnII GATC 1 cut(s) 525
DraI TTTAAA 1 cut(s) 294
Eco31I GGTCTC 1 cut(s) 510
Eco47I GGWCC 1 cut(s) 487
EcoRI GAATTC 1 cut(s) 316
EcoRII CCWGG 1 cut(s) 29
FaeI CATG 1 cut(s) 206
FaiI YATR 4 cut(s) 74, 204, 212, 262
FatI CATG 1 cut(s) 202
FbaI TGATCA 1 cut(s) 525
Fnu4HI GCNGC 1 cut(s) 305
FokI GGATG 1 cut(s) 253
Fsp4HI GCNGC 1 cut(s) 305
FspBI CTAG 1 cut(s) 218
GluI GCNGC 1 cut(s) 305
HaeIII GGCC 1 cut(s) 304
HapII CCGG 1 cut(s) 330
Hin1II CATG 1 cut(s) 206
HinfI GANTC 2 cut(s) 174, 481
HpaII CCGG 1 cut(s) 330
HphI GGTGA 1 cut(s) 152
Hpy166II GTNNAC 1 cut(s) 199
Hpy188I TCNGA 1 cut(s) 521
Hpy188III TCNNGA 4 cut(s) 80, 178, 321, 485
Hpy8I GTNNAC 1 cut(s) 199
HpyAV CCTTC 3 cut(s) 21, 36, 500
HpyCH4III ACNGT 3 cut(s) 125, 245, 275
HpyCH4IV ACGT 3 cut(s) 195, 336, 530
HpyCH4V TGCA 6 cut(s) 72, 129, 278, 342, 364, 396
HpyF10VI GCNNNNNNNGC 2 cut(s) 147, 339
HpyF3I CTNAG 1 cut(s) 51
HpySE526I ACGT 3 cut(s) 195, 336, 530
Hsp92II CATG 1 cut(s) 206
Ksp22I TGATCA 1 cut(s) 525
Kzo9I GATC 1 cut(s) 525
LmnI GCTCC 1 cut(s) 332
LpnPI CCDG 7 cut(s) 16, 43, 334, 343, 361, 374, 470
LweI GCATC 2 cut(s) 138, 214
MaeI CTAG 1 cut(s) 218
MaeII ACGT 3 cut(s) 195, 336, 530
MaeIII GTNAC 2 cut(s) 350, 466
MalI GATC 1 cut(s) 527
MboI GATC 1 cut(s) 525
MboII GAAGA 5 cut(s) 52, 106, 115, 193, 411
MfeI CAATTG 1 cut(s) 498
MluCI AATT 7 cut(s) 75, 316, 415, 438, 450, 460, 498
MlyI GAGTC 1 cut(s) 168
MmeI TCCRAC 1 cut(s) 294
MnlI CCTC 6 cut(s) 76, 79, 84, 153, 168, 317
MroXI GAANNNNTTC 1 cut(s) 59
MseI TTAA 2 cut(s) 236, 293
MspI CCGG 1 cut(s) 330
MspR9I CCNGG 1 cut(s) 31
MunI CAATTG 1 cut(s) 498
MvaI CCWGG 1 cut(s) 31
MwoI GCNNNNNNNGC 2 cut(s) 147, 339
NdeII GATC 1 cut(s) 525
NlaIII CATG 1 cut(s) 206
NlaIV GGNNCC 1 cut(s) 328
NmuCI GTSAC 2 cut(s) 350, 466
PdmI GAANNNNTTC 1 cut(s) 59
PfeI GAWTC 1 cut(s) 481
PkrI GCNGC 1 cut(s) 306
PleI GAGTC 1 cut(s) 168
PpsI GAGTC 1 cut(s) 168
PsiI TTATAA 1 cut(s) 212
Psp6I CCWGG 1 cut(s) 29
PspGI CCWGG 1 cut(s) 29
PspN4I GGNNCC 1 cut(s) 328
PspPI GGNCC 1 cut(s) 487
PstNI CAGNNNCTG 2 cut(s) 138, 348
RsaI GTAC 1 cut(s) 346
RsaNI GTAC 1 cut(s) 345
SaqAI TTAA 2 cut(s) 236, 293
SatI GCNGC 1 cut(s) 305
Sau3AI GATC 1 cut(s) 525
Sau96I GGNCC 1 cut(s) 487
SchI GAGTC 1 cut(s) 168
ScrFI CCNGG 1 cut(s) 31
SfaNI GCATC 2 cut(s) 138, 214
SinI GGWCC 1 cut(s) 487
Sse9I AATT 7 cut(s) 75, 316, 415, 438, 450, 460, 498
SsiI CCGC 1 cut(s) 305
SspI AATATT 1 cut(s) 19
SspMI CTAG 1 cut(s) 218
StyD4I CCNGG 1 cut(s) 29
TaaI ACNGT 3 cut(s) 125, 245, 275
TaiI ACGT 3 cut(s) 198, 339, 533
TaqI TCGA 1 cut(s) 240
TasI AATT 7 cut(s) 75, 316, 415, 438, 450, 460, 498
TauI GCSGC 1 cut(s) 307
TfiI GAWTC 1 cut(s) 481
Tru1I TTAA 2 cut(s) 236, 293
Tru9I TTAA 2 cut(s) 236, 293
TscAI CASTG 3 cut(s) 55, 152, 280
TseFI GTSAC 2 cut(s) 350, 466
Tsp45I GTSAC 2 cut(s) 350, 466
TspRI CASTG 3 cut(s) 55, 152, 280
VpaK11BI GGWCC 1 cut(s) 487
XapI RAATTY 3 cut(s) 316, 438, 460
XmnI GAANNNNTTC 1 cut(s) 59
XspI CTAG 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.