Rh1BG186300

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0014547
Physical Location & Seq
Reverse (-)
30120234 .. 30121661
1428 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG186300.1

Sequence Viewer

Length: 726 bp
ATGTTTGTCCCTTCAAATCTTCTACCTTCCTGGCTTGCCGTTCTGCTCACTGAGAAGTTCTTCAACGCTTGCATAATTCACGAGGAGGAGAGGAAGAACGAGAAGAACATTTACTGCTTGGACTGTTGCATCAGTTTCTGCCCTCACTGCTTCACCCCTCACCAATCTCACAGACTCTTGAAGATAAGGAGATACGTTTACCATGATGTTATAAAGCTAGATGATGCTTCCAAGTTAATCGACTGTGCTTTGGTTCAATCATACACATCCAACAGTGCAAAGGTGGTGTTTTTAAACCAAAGGCCGCAGACAAAGAATTCCAGAGGCTCCGGCAACGTGTGCGGTACCTGTGACAGAAGCCTGCAAGATCCTTATCTCTATTGTTCTCTGTCTTGCAAGATTGATCACGTTGTAAGAACAGAAGGTGGTCTGTCCAAGTATCTCCGTGAGTGCAATTTCATGGCTCTACCCGACCCTGGTTTAGACGACGGCTTGATGACTCCCGACTCGGTTCTCGAGCCGGCCGGTTCGGTCCGAACCTCCTCCGGTTCCGGAGGCTACAGCGAATTGGGTTGCATGTCCTTGGCATGTACAGCTACGACAGAGATTGTCAGGAAAAAGAGAAGCAGCTTATTGAGGGTGGCGTGCCGGCCGGTTTCTTCACCGGTGTCGGAAATCCCGGCCGGCCGGAGAAAGGGGACTCCACACCGGGCTCCGCTTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
PLATZ

Protein Analysis

241

Amino Acids

26.74

Weight (kDa)

8.7

Isoelectric Point (pI)

64.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 63 - 134 8.3e-28 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014547)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G60670
fragaria_vesca FvH4_7g11220
malus_domestica MD02G1208800.v1.1 MD07G1117000.v1.1
prunus_persica Prupe.2G140000_v2.0.a1
pyrus_communis pycom07g10810
rosa_chinensis RchiOBHm_Chr1g0349351
rosa_laevigata RLG00000028556
rosa_multiflora Rmu_co8365383.1_g000001 Rmu_sc0031211.1_g000001
rosa_roxburghii Rroxscaffold_4G00305630
rosa_rugosa Rorug01G0202900
rosa_samantha Rh1AG220300 Rh1BG186300 Rh1CG205400 Rh1DG215800
rosa_wichuraiana Rw1G018720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 212
Acc65I GGTACC 1 cut(s) 344
AccB1I GGYRCC 1 cut(s) 344
AccIII TCCGGA 1 cut(s) 551
AciI CCGC 3 cut(s) 305, 342, 716
AclWI GGATC 1 cut(s) 362
AcoI YGGCCR 4 cut(s) 522, 650, 681, 685
AcsI RAATTY 1 cut(s) 316
AfaI GTAC 2 cut(s) 346, 592
AfiI CCNNNNNNNGG 2 cut(s) 476, 694
AflIII ACRYGT 1 cut(s) 336
AgeI ACCGGT 1 cut(s) 664
AgsI TTSAA 4 cut(s) 15, 64, 181, 257
AjnI CCWGG 2 cut(s) 29, 475
AluBI AGCT 3 cut(s) 217, 596, 630
AluI AGCT 3 cut(s) 217, 596, 630
AlwI GGATC 1 cut(s) 362
AlwNI CAGNNNCTG 1 cut(s) 138
Ama87I CYCGRG 1 cut(s) 515
Aor13HI TCCGGA 1 cut(s) 551
AoxI GGCC 5 cut(s) 302, 522, 650, 681, 685
ApeKI GCWGC 1 cut(s) 627
ApoI RAATTY 1 cut(s) 316
AsiGI ACCGGT 1 cut(s) 664
Asp700I GAANNNNTTC 1 cut(s) 59
Asp718I GGTACC 1 cut(s) 344
AspS9I GGNCC 1 cut(s) 532
AsuC2I CCSGG 2 cut(s) 680, 710
AsuHPI GGTGA 3 cut(s) 145, 152, 654
AvaI CYCGRG 1 cut(s) 515
AvaII GGWCC 1 cut(s) 532
BanI GGYRCC 1 cut(s) 344
BanII GRGCYC 1 cut(s) 715
BarI GAAGNNNNNNTAC 2 cut(s) 95, 127
BauI CACGAG 1 cut(s) 80
BbvI GCAGC 1 cut(s) 639
BceAI ACGGC 2 cut(s) 23, 505
BciT130I CCWGG 2 cut(s) 31, 477
BclI TGATCA 1 cut(s) 403
BcnI CCSGG 2 cut(s) 680, 710
BfaI CTAG 1 cut(s) 218
BfmI CTRYAG 1 cut(s) 559
BisI GCNGC 2 cut(s) 305, 628
BlsI GCNGC 2 cut(s) 306, 629
Bme1390I CCNGG 4 cut(s) 31, 477, 680, 710
Bme18I GGWCC 1 cut(s) 532
BmeT110I CYCGRG 1 cut(s) 515
BmgT120I GGNCC 1 cut(s) 532
BmiI GGNNCC 4 cut(s) 328, 346, 550, 714
BmrFI CCNGG 4 cut(s) 31, 477, 680, 710
BmsI GCATC 2 cut(s) 138, 214
BpuMI CCSGG 2 cut(s) 680, 710
BsaBI GATNNNNATC 1 cut(s) 372
BsaJI CCNNGG 2 cut(s) 475, 582
BsaWI WCCGGW 3 cut(s) 545, 551, 664
Bsc4I CCNNNNNNNGG 2 cut(s) 476, 694
Bse118I RCCGGY 6 cut(s) 520, 524, 648, 652, 664, 683
Bse8I GATNNNNATC 1 cut(s) 372
BseAI TCCGGA 1 cut(s) 551
BseBI CCWGG 2 cut(s) 31, 477
BseDI CCNNGG 2 cut(s) 475, 582
BseGI GGATG 1 cut(s) 266
BseJI GATNNNNATC 1 cut(s) 372
BseLI CCNNNNNNNGG 2 cut(s) 476, 694
BseMII CTCAG 1 cut(s) 42
BseRI GAGGAG 3 cut(s) 98, 101, 532
BseX3I CGGCCG 4 cut(s) 522, 650, 681, 685
BseXI GCAGC 1 cut(s) 639
Bsh1285I CGRYCG 4 cut(s) 525, 653, 684, 688
BshFI GGCC 5 cut(s) 304, 524, 652, 683, 687
BshNI GGYRCC 1 cut(s) 344
BshTI ACCGGT 1 cut(s) 664
BsiEI CGRYCG 4 cut(s) 525, 653, 684, 688
BsiHKCI CYCGRG 1 cut(s) 515
BslFI GGGAC 1 cut(s) 712
BslI CCNNNNNNNGG 2 cut(s) 476, 694
BsmFI GGGAC 1 cut(s) 712
BsnI GGCC 5 cut(s) 304, 524, 652, 683, 687
BsoBI CYCGRG 1 cut(s) 515
Bsp1286I GDGCHC 1 cut(s) 715
Bsp13I TCCGGA 1 cut(s) 551
Bsp1407I TGTACA 1 cut(s) 590
Bsp143I GATC 2 cut(s) 367, 403
BspACI CCGC 3 cut(s) 305, 342, 716
BspANI GGCC 5 cut(s) 304, 524, 652, 683, 687
BspCNI CTCAG 1 cut(s) 43
BspEI TCCGGA 1 cut(s) 551
BspLI GGNNCC 4 cut(s) 328, 346, 550, 714
BspPI GGATC 1 cut(s) 362
BspT107I GGYRCC 1 cut(s) 344
BsrFI RCCGGY 6 cut(s) 520, 524, 648, 652, 664, 683
BsrGI TGTACA 1 cut(s) 590
BssAI RCCGGY 6 cut(s) 520, 524, 648, 652, 664, 683
BssECI CCNNGG 2 cut(s) 475, 582
BssMI GATC 2 cut(s) 367, 403
BssSI CACGAG 1 cut(s) 80
BssT1I CCWWGG 1 cut(s) 582
Bst2BI CACGAG 1 cut(s) 80
Bst2UI CCWGG 2 cut(s) 31, 477
Bst4CI ACNGT 3 cut(s) 125, 245, 275
BstAPI GCANNNNNTGC 1 cut(s) 339
BstAUI TGTACA 1 cut(s) 590
BstC8I GCNNGC 7 cut(s) 36, 70, 362, 522, 646, 650, 685
BstDEI CTNAG 1 cut(s) 51
BstF5I GGATG 1 cut(s) 266
BstKTI GATC 2 cut(s) 370, 406
BstMBI GATC 2 cut(s) 367, 403
BstMCI CGRYCG 4 cut(s) 525, 653, 684, 688
BstMWI GCNNNNNNNGC 3 cut(s) 147, 339, 593
BstNI CCWGG 2 cut(s) 31, 477
BstNSI RCATGY 2 cut(s) 580, 591
BstSCI CCNGG 4 cut(s) 29, 475, 678, 708
BstSFI CTRYAG 1 cut(s) 559
BstV1I GCAGC 1 cut(s) 639
BstX2I RGATCY 1 cut(s) 367
BstYI RGATCY 1 cut(s) 367
BstZI CGGCCG 4 cut(s) 522, 650, 681, 685
BsuRI GGCC 5 cut(s) 304, 524, 652, 683, 687
BtsCI GGATG 1 cut(s) 266
BtsI GCAGTG 1 cut(s) 145
BtsIMutI CAGTG 3 cut(s) 48, 145, 280
Cac8I GCNNGC 7 cut(s) 36, 70, 362, 522, 646, 650, 685
CaiI CAGNNNCTG 1 cut(s) 138
Cfr10I RCCGGY 6 cut(s) 520, 524, 648, 652, 664, 683
Cfr13I GGNCC 1 cut(s) 532
CpoI CGGWCCG 1 cut(s) 532
Csp6I GTAC 2 cut(s) 345, 591
CspAI ACCGGT 1 cut(s) 664
CspI CGGWCCG 1 cut(s) 532
CviAII CATG 4 cut(s) 203, 460, 577, 588
CviQI GTAC 2 cut(s) 345, 591
DdeI CTNAG 1 cut(s) 51
DpnI GATC 2 cut(s) 369, 405
DpnII GATC 2 cut(s) 367, 403
DraI TTTAAA 1 cut(s) 294
EaeI YGGCCR 4 cut(s) 522, 650, 681, 685
EagI CGGCCG 4 cut(s) 522, 650, 681, 685
EclXI CGGCCG 4 cut(s) 522, 650, 681, 685
Eco130I CCWWGG 1 cut(s) 582
Eco24I GRGCYC 1 cut(s) 715
Eco47I GGWCC 1 cut(s) 532
Eco52I CGGCCG 4 cut(s) 522, 650, 681, 685
Eco88I CYCGRG 1 cut(s) 515
EcoRI GAATTC 1 cut(s) 316
EcoRII CCWGG 2 cut(s) 29, 475
EcoT14I CCWWGG 1 cut(s) 582
EcoT38I GRGCYC 1 cut(s) 715
ErhI CCWWGG 1 cut(s) 582
FaeI CATG 4 cut(s) 206, 463, 580, 591
FaiI YATR 7 cut(s) 74, 204, 212, 262, 461, 578, 589
FaqI GGGAC 1 cut(s) 712
FatI CATG 4 cut(s) 202, 459, 576, 587
FbaI TGATCA 1 cut(s) 403
Fnu4HI GCNGC 2 cut(s) 305, 628
FokI GGATG 1 cut(s) 253
FriOI GRGCYC 1 cut(s) 715
FseI GGCCGGCC 1 cut(s) 687
Fsp4HI GCNGC 2 cut(s) 305, 628
FspBI CTAG 1 cut(s) 218
GluI GCNGC 2 cut(s) 305, 628
HaeIII GGCC 5 cut(s) 304, 524, 652, 683, 687
Hin1II CATG 4 cut(s) 206, 463, 580, 591
HinfI GANTC 4 cut(s) 174, 499, 506, 700
HphI GGTGA 3 cut(s) 145, 152, 654
Hpy166II GTNNAC 1 cut(s) 199
Hpy188I TCNGA 2 cut(s) 536, 673
Hpy188III TCNNGA 7 cut(s) 80, 178, 321, 503, 515, 552, 613
Hpy8I GTNNAC 1 cut(s) 199
Hpy99I CGWCG 1 cut(s) 491
HpyAV CCTTC 3 cut(s) 21, 36, 416
HpyCH4III ACNGT 3 cut(s) 125, 245, 275
HpyCH4IV ACGT 3 cut(s) 195, 336, 408
HpyCH4V TGCA 7 cut(s) 72, 129, 278, 364, 396, 453, 576
HpyF10VI GCNNNNNNNGC 3 cut(s) 147, 339, 593
HpyF3I CTNAG 1 cut(s) 51
HpySE526I ACGT 3 cut(s) 195, 336, 408
Hsp92II CATG 4 cut(s) 206, 463, 580, 591
Kpn2I TCCGGA 1 cut(s) 551
KpnI GGTACC 1 cut(s) 348
KroI GCCGGC 3 cut(s) 520, 648, 683
KroNI GCCGGC 3 cut(s) 522, 650, 685
Ksp22I TGATCA 1 cut(s) 403
Kzo9I GATC 2 cut(s) 367, 403
LmnI GCTCC 2 cut(s) 332, 718
Lsp1109I GCAGC 1 cut(s) 639
LweI GCATC 2 cut(s) 138, 214
MaeI CTAG 1 cut(s) 218
MaeII ACGT 3 cut(s) 195, 336, 408
MaeIII GTNAC 1 cut(s) 350
MalI GATC 2 cut(s) 369, 405
MboI GATC 2 cut(s) 367, 403
MboII GAAGA 6 cut(s) 11, 52, 106, 115, 193, 651
MflI RGATCY 1 cut(s) 367
MhlI GDGCHC 1 cut(s) 715
MluCI AATT 4 cut(s) 75, 316, 454, 566
MlyI GAGTC 4 cut(s) 168, 493, 500, 694
MmeI TCCRAC 2 cut(s) 294, 651
MroI TCCGGA 1 cut(s) 551
MroNI GCCGGC 3 cut(s) 520, 648, 683
MroXI GAANNNNTTC 1 cut(s) 59
MseI TTAA 2 cut(s) 236, 293
MspR9I CCNGG 4 cut(s) 31, 477, 680, 710
MvaI CCWGG 2 cut(s) 31, 477
MwoI GCNNNNNNNGC 3 cut(s) 147, 339, 593
NaeI GCCGGC 3 cut(s) 522, 650, 685
NciI CCSGG 2 cut(s) 680, 710
NdeII GATC 2 cut(s) 367, 403
NgoMIV GCCGGC 3 cut(s) 520, 648, 683
NlaIII CATG 4 cut(s) 206, 463, 580, 591
NlaIV GGNNCC 4 cut(s) 328, 346, 550, 714
NmuCI GTSAC 1 cut(s) 350
NspI RCATGY 2 cut(s) 580, 591
PaeR7I CTCGAG 1 cut(s) 515
PdiI GCCGGC 3 cut(s) 522, 650, 685
PdmI GAANNNNTTC 1 cut(s) 59
PinAI ACCGGT 1 cut(s) 664
PkrI GCNGC 2 cut(s) 306, 629
PleI GAGTC 4 cut(s) 168, 493, 500, 694
PpsI GAGTC 4 cut(s) 168, 493, 500, 694
PsiI TTATAA 1 cut(s) 212
Psp6I CCWGG 2 cut(s) 29, 475
PspGI CCWGG 2 cut(s) 29, 475
PspN4I GGNNCC 4 cut(s) 328, 346, 550, 714
PspPI GGNCC 1 cut(s) 532
PstNI CAGNNNCTG 1 cut(s) 138
PsuI RGATCY 1 cut(s) 367
RigI GGCCGGCC 1 cut(s) 687
RsaI GTAC 2 cut(s) 346, 592
RsaNI GTAC 2 cut(s) 345, 591
Rsr2I CGGWCCG 1 cut(s) 532
RsrII CGGWCCG 1 cut(s) 532
SaqAI TTAA 2 cut(s) 236, 293
SatI GCNGC 2 cut(s) 305, 628
Sau3AI GATC 2 cut(s) 367, 403
Sau96I GGNCC 1 cut(s) 532
SchI GAGTC 4 cut(s) 168, 493, 500, 694
ScrFI CCNGG 4 cut(s) 31, 477, 680, 710
SduI GDGCHC 1 cut(s) 715
SfaNI GCATC 2 cut(s) 138, 214
SfcI CTRYAG 1 cut(s) 559
Sfr274I CTCGAG 1 cut(s) 515
SgrAI CRCCGGYG 1 cut(s) 664
SinI GGWCC 1 cut(s) 532
SlaI CTCGAG 1 cut(s) 515
SmlI CTYRAG 1 cut(s) 515
SmoI CTYRAG 1 cut(s) 515
Sse9I AATT 4 cut(s) 75, 316, 454, 566
SsiI CCGC 3 cut(s) 305, 342, 716
SspMI CTAG 1 cut(s) 218
StyD4I CCNGG 4 cut(s) 29, 475, 678, 708
StyI CCWWGG 1 cut(s) 582
TaaI ACNGT 3 cut(s) 125, 245, 275
TaiI ACGT 3 cut(s) 198, 339, 411
TaqI TCGA 2 cut(s) 240, 516
TaqII GACCGA 1 cut(s) 520
TasI AATT 4 cut(s) 75, 316, 454, 566
TatI WGTACW 1 cut(s) 590
TauI GCSGC 1 cut(s) 307
Tru1I TTAA 2 cut(s) 236, 293
Tru9I TTAA 2 cut(s) 236, 293
TscAI CASTG 3 cut(s) 55, 152, 280
TseFI GTSAC 1 cut(s) 350
TseI GCWGC 1 cut(s) 627
Tsp45I GTSAC 1 cut(s) 350
TspDTI ATGAA 2 cut(s) 448, 710
TspGWI ACGGA 1 cut(s) 434
TspRI CASTG 3 cut(s) 55, 152, 280
VpaK11BI GGWCC 1 cut(s) 532
XapI RAATTY 1 cut(s) 316
XceI RCATGY 2 cut(s) 580, 591
XhoI CTCGAG 1 cut(s) 515
XmnI GAANNNNTTC 1 cut(s) 59
XspI CTAG 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.