Rmu_co8365383.1_g000001

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8365383.1
OG0014547
Physical Location & Seq
Forward (+)
1 .. 754
754 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8365383.1_g000001.1.cds

Sequence Viewer

Length: 327 bp
attgatcacgttgtaagaacagaaggtggtctgtccaagtatctccgtgagtgtaatttcatggctctacccgaccctggtttagacgacggtttgctgactcccgacacggttctcgagccggccggttcggtccgaacctcctccggttccggaggctacggcgaattgggttgcatgtccttggcatgtacagctacgacagagattgtcaggaaaaagagaagcagcttattgagggcggcgtgccggccggtttcttcaccggtgtcggaaatcccggccggccggagaaaggggactccacaccgggctccgcttcattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
PLATZ

Protein Analysis

108

Amino Acids

11.4

Weight (kDa)

8.85

Isoelectric Point (pI)

75.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014547)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G60670
fragaria_vesca FvH4_7g11220
malus_domestica MD02G1208800.v1.1 MD07G1117000.v1.1
prunus_persica Prupe.2G140000_v2.0.a1
pyrus_communis pycom07g10810
rosa_chinensis RchiOBHm_Chr1g0349351
rosa_laevigata RLG00000028556
rosa_multiflora Rmu_co8365383.1_g000001 Rmu_sc0031211.1_g000001
rosa_roxburghii Rroxscaffold_4G00305630
rosa_rugosa Rorug01G0202900
rosa_samantha Rh1AG220300 Rh1BG186300 Rh1CG205400 Rh1DG215800
rosa_wichuraiana Rw1G018720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 152
AciI CCGC 2 cut(s) 242, 317
AcoI YGGCCR 4 cut(s) 123, 251, 282, 286
AfaI GTAC 1 cut(s) 193
AfiI CCNNNNNNNGG 2 cut(s) 77, 295
AgeI ACCGGT 1 cut(s) 265
AjnI CCWGG 1 cut(s) 76
AluBI AGCT 2 cut(s) 197, 231
AluI AGCT 2 cut(s) 197, 231
Ama87I CYCGRG 1 cut(s) 116
Aor13HI TCCGGA 1 cut(s) 152
AoxI GGCC 4 cut(s) 123, 251, 282, 286
ApeKI GCWGC 1 cut(s) 228
AsiGI ACCGGT 1 cut(s) 265
AspS9I GGNCC 1 cut(s) 133
AsuC2I CCSGG 2 cut(s) 281, 311
AsuHPI GGTGA 1 cut(s) 255
AvaI CYCGRG 1 cut(s) 116
AvaII GGWCC 1 cut(s) 133
BanII GRGCYC 1 cut(s) 316
BbvI GCAGC 1 cut(s) 240
BceAI ACGGC 1 cut(s) 178
BciT130I CCWGG 1 cut(s) 78
BclI TGATCA 1 cut(s) 4
BcnI CCSGG 2 cut(s) 281, 311
BisI GCNGC 2 cut(s) 229, 243
BlsI GCNGC 2 cut(s) 230, 244
Bme1390I CCNGG 3 cut(s) 78, 281, 311
Bme18I GGWCC 1 cut(s) 133
BmeT110I CYCGRG 1 cut(s) 116
BmgT120I GGNCC 1 cut(s) 133
BmiI GGNNCC 2 cut(s) 151, 315
BmrFI CCNGG 3 cut(s) 78, 281, 311
BpuMI CCSGG 2 cut(s) 281, 311
BsaJI CCNNGG 2 cut(s) 76, 183
BsaWI WCCGGW 3 cut(s) 146, 152, 265
Bsc4I CCNNNNNNNGG 2 cut(s) 77, 295
Bse118I RCCGGY 6 cut(s) 121, 125, 249, 253, 265, 284
BseAI TCCGGA 1 cut(s) 152
BseBI CCWGG 1 cut(s) 78
BseDI CCNNGG 2 cut(s) 76, 183
BseLI CCNNNNNNNGG 2 cut(s) 77, 295
BseRI GAGGAG 1 cut(s) 133
BseX3I CGGCCG 4 cut(s) 123, 251, 282, 286
BseXI GCAGC 1 cut(s) 240
Bsh1285I CGRYCG 4 cut(s) 126, 254, 285, 289
BshFI GGCC 4 cut(s) 125, 253, 284, 288
BshTI ACCGGT 1 cut(s) 265
BsiEI CGRYCG 4 cut(s) 126, 254, 285, 289
BsiHKCI CYCGRG 1 cut(s) 116
BslFI GGGAC 1 cut(s) 313
BslI CCNNNNNNNGG 2 cut(s) 77, 295
BsmFI GGGAC 1 cut(s) 313
BsnI GGCC 4 cut(s) 125, 253, 284, 288
BsoBI CYCGRG 1 cut(s) 116
Bsp1286I GDGCHC 1 cut(s) 316
Bsp13I TCCGGA 1 cut(s) 152
Bsp1407I TGTACA 1 cut(s) 191
Bsp143I GATC 1 cut(s) 4
BspACI CCGC 2 cut(s) 242, 317
BspANI GGCC 4 cut(s) 125, 253, 284, 288
BspEI TCCGGA 1 cut(s) 152
BspLI GGNNCC 2 cut(s) 151, 315
BsrFI RCCGGY 6 cut(s) 121, 125, 249, 253, 265, 284
BsrGI TGTACA 1 cut(s) 191
BssAI RCCGGY 6 cut(s) 121, 125, 249, 253, 265, 284
BssECI CCNNGG 2 cut(s) 76, 183
BssMI GATC 1 cut(s) 4
BssT1I CCWWGG 1 cut(s) 183
Bst2UI CCWGG 1 cut(s) 78
Bst4CI ACNGT 2 cut(s) 92, 112
BstAUI TGTACA 1 cut(s) 191
BstC8I GCNNGC 4 cut(s) 123, 247, 251, 286
BstKTI GATC 1 cut(s) 7
BstMBI GATC 1 cut(s) 4
BstMCI CGRYCG 4 cut(s) 126, 254, 285, 289
BstMWI GCNNNNNNNGC 1 cut(s) 194
BstNI CCWGG 1 cut(s) 78
BstNSI RCATGY 2 cut(s) 181, 192
BstSCI CCNGG 3 cut(s) 76, 279, 309
BstV1I GCAGC 1 cut(s) 240
BstZI CGGCCG 4 cut(s) 123, 251, 282, 286
BsuRI GGCC 4 cut(s) 125, 253, 284, 288
Cac8I GCNNGC 4 cut(s) 123, 247, 251, 286
Cfr10I RCCGGY 6 cut(s) 121, 125, 249, 253, 265, 284
Cfr13I GGNCC 1 cut(s) 133
CpoI CGGWCCG 1 cut(s) 133
Csp6I GTAC 1 cut(s) 192
CspAI ACCGGT 1 cut(s) 265
CspI CGGWCCG 1 cut(s) 133
CviAII CATG 3 cut(s) 61, 178, 189
CviQI GTAC 1 cut(s) 192
DpnI GATC 1 cut(s) 6
DpnII GATC 1 cut(s) 4
EaeI YGGCCR 4 cut(s) 123, 251, 282, 286
EagI CGGCCG 4 cut(s) 123, 251, 282, 286
EclXI CGGCCG 4 cut(s) 123, 251, 282, 286
Eco130I CCWWGG 1 cut(s) 183
Eco24I GRGCYC 1 cut(s) 316
Eco47I GGWCC 1 cut(s) 133
Eco52I CGGCCG 4 cut(s) 123, 251, 282, 286
Eco88I CYCGRG 1 cut(s) 116
EcoRII CCWGG 1 cut(s) 76
EcoT14I CCWWGG 1 cut(s) 183
EcoT38I GRGCYC 1 cut(s) 316
ErhI CCWWGG 1 cut(s) 183
FaeI CATG 3 cut(s) 64, 181, 192
FaiI YATR 3 cut(s) 62, 179, 190
FaqI GGGAC 1 cut(s) 313
FatI CATG 3 cut(s) 60, 177, 188
FbaI TGATCA 1 cut(s) 4
Fnu4HI GCNGC 2 cut(s) 229, 243
FriOI GRGCYC 1 cut(s) 316
FseI GGCCGGCC 1 cut(s) 288
Fsp4HI GCNGC 2 cut(s) 229, 243
GluI GCNGC 2 cut(s) 229, 243
HaeIII GGCC 4 cut(s) 125, 253, 284, 288
Hin1II CATG 3 cut(s) 64, 181, 192
HinfI GANTC 2 cut(s) 100, 301
HphI GGTGA 1 cut(s) 255
Hpy188I TCNGA 2 cut(s) 137, 274
Hpy188III TCNNGA 4 cut(s) 104, 116, 153, 214
Hpy99I CGWCG 1 cut(s) 92
HpyAV CCTTC 1 cut(s) 17
HpyCH4III ACNGT 2 cut(s) 92, 112
HpyCH4IV ACGT 1 cut(s) 9
HpyCH4V TGCA 1 cut(s) 177
HpyF10VI GCNNNNNNNGC 1 cut(s) 194
HpySE526I ACGT 1 cut(s) 9
Hsp92II CATG 3 cut(s) 64, 181, 192
Kpn2I TCCGGA 1 cut(s) 152
KroI GCCGGC 3 cut(s) 121, 249, 284
KroNI GCCGGC 3 cut(s) 123, 251, 286
Ksp22I TGATCA 1 cut(s) 4
Kzo9I GATC 1 cut(s) 4
LmnI GCTCC 1 cut(s) 319
Lsp1109I GCAGC 1 cut(s) 240
MaeII ACGT 1 cut(s) 9
MalI GATC 1 cut(s) 6
MboI GATC 1 cut(s) 4
MboII GAAGA 1 cut(s) 252
MhlI GDGCHC 1 cut(s) 316
MluCI AATT 2 cut(s) 55, 167
MlyI GAGTC 2 cut(s) 94, 295
MmeI TCCRAC 1 cut(s) 252
MnlI CCTC 4 cut(s) 149, 151, 154, 231
MroI TCCGGA 1 cut(s) 152
MroNI GCCGGC 3 cut(s) 121, 249, 284
MspR9I CCNGG 3 cut(s) 78, 281, 311
MvaI CCWGG 1 cut(s) 78
MwoI GCNNNNNNNGC 1 cut(s) 194
NaeI GCCGGC 3 cut(s) 123, 251, 286
NciI CCSGG 2 cut(s) 281, 311
NdeII GATC 1 cut(s) 4
NgoMIV GCCGGC 3 cut(s) 121, 249, 284
NlaIII CATG 3 cut(s) 64, 181, 192
NlaIV GGNNCC 2 cut(s) 151, 315
NspI RCATGY 2 cut(s) 181, 192
PaeR7I CTCGAG 1 cut(s) 116
PdiI GCCGGC 3 cut(s) 123, 251, 286
PinAI ACCGGT 1 cut(s) 265
PkrI GCNGC 2 cut(s) 230, 244
PleI GAGTC 2 cut(s) 94, 295
PpsI GAGTC 2 cut(s) 94, 295
Psp6I CCWGG 1 cut(s) 76
PspGI CCWGG 1 cut(s) 76
PspN4I GGNNCC 2 cut(s) 151, 315
PspPI GGNCC 1 cut(s) 133
RigI GGCCGGCC 1 cut(s) 288
RsaI GTAC 1 cut(s) 193
RsaNI GTAC 1 cut(s) 192
Rsr2I CGGWCCG 1 cut(s) 133
RsrII CGGWCCG 1 cut(s) 133
SatI GCNGC 2 cut(s) 229, 243
Sau3AI GATC 1 cut(s) 4
Sau96I GGNCC 1 cut(s) 133
SchI GAGTC 2 cut(s) 94, 295
ScrFI CCNGG 3 cut(s) 78, 281, 311
SduI GDGCHC 1 cut(s) 316
SetI ASST 5 cut(s) 12, 28, 143, 199, 233
Sfr274I CTCGAG 1 cut(s) 116
SgrAI CRCCGGYG 1 cut(s) 265
SinI GGWCC 1 cut(s) 133
SlaI CTCGAG 1 cut(s) 116
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
Sse9I AATT 2 cut(s) 55, 167
SsiI CCGC 2 cut(s) 242, 317
StyD4I CCNGG 3 cut(s) 76, 279, 309
StyI CCWWGG 1 cut(s) 183
TaaI ACNGT 2 cut(s) 92, 112
TaiI ACGT 1 cut(s) 12
TaqI TCGA 1 cut(s) 117
TaqII GACCGA 1 cut(s) 121
TasI AATT 2 cut(s) 55, 167
TatI WGTACW 1 cut(s) 191
TauI GCSGC 1 cut(s) 245
TseI GCWGC 1 cut(s) 228
TspDTI ATGAA 2 cut(s) 49, 311
TspGWI ACGGA 1 cut(s) 35
VpaK11BI GGWCC 1 cut(s) 133
XceI RCATGY 2 cut(s) 181, 192
XhoI CTCGAG 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.