Rmu_sc0031211.1_g000001

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0031211.1
OG0014547
Physical Location & Seq
Reverse (-)
751 .. 1017
267 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0031211.1_g000001.1.cds

Sequence Viewer

Length: 267 bp
atggctctacccgaccctggtttagacgacggtttgctgactcccgacacggttctcgagccggccggttcggtccgaacctcctccggttccggaggctacggcgaattgggttgcatgtccttggcatgtacagctacgacagagattgtcaggaaaaagagaagcagcttattgagggcggcgtgccggccggtttcttcaccggtgtcggaaatcccggccggccggagaaaggggactccacaccgggctccgcttcattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
PLATZ

Protein Analysis

88

Amino Acids

9.08

Weight (kDa)

9.05

Isoelectric Point (pI)

80.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014547)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G60670
fragaria_vesca FvH4_7g11220
malus_domestica MD02G1208800.v1.1 MD07G1117000.v1.1
prunus_persica Prupe.2G140000_v2.0.a1
pyrus_communis pycom07g10810
rosa_chinensis RchiOBHm_Chr1g0349351
rosa_laevigata RLG00000028556
rosa_multiflora Rmu_co8365383.1_g000001 Rmu_sc0031211.1_g000001
rosa_roxburghii Rroxscaffold_4G00305630
rosa_rugosa Rorug01G0202900
rosa_samantha Rh1AG220300 Rh1BG186300 Rh1CG205400 Rh1DG215800
rosa_wichuraiana Rw1G018720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 92
AciI CCGC 2 cut(s) 182, 257
AcoI YGGCCR 4 cut(s) 63, 191, 222, 226
AfaI GTAC 1 cut(s) 133
AfiI CCNNNNNNNGG 2 cut(s) 17, 235
AgeI ACCGGT 1 cut(s) 205
AjnI CCWGG 1 cut(s) 16
AluBI AGCT 2 cut(s) 137, 171
AluI AGCT 2 cut(s) 137, 171
Ama87I CYCGRG 1 cut(s) 56
Aor13HI TCCGGA 1 cut(s) 92
AoxI GGCC 4 cut(s) 63, 191, 222, 226
ApeKI GCWGC 1 cut(s) 168
AsiGI ACCGGT 1 cut(s) 205
AspS9I GGNCC 1 cut(s) 73
AsuC2I CCSGG 2 cut(s) 221, 251
AsuHPI GGTGA 1 cut(s) 195
AvaI CYCGRG 1 cut(s) 56
AvaII GGWCC 1 cut(s) 73
BanII GRGCYC 1 cut(s) 256
BbvI GCAGC 1 cut(s) 180
BceAI ACGGC 1 cut(s) 118
BciT130I CCWGG 1 cut(s) 18
BcnI CCSGG 2 cut(s) 221, 251
BisI GCNGC 2 cut(s) 169, 183
BlsI GCNGC 2 cut(s) 170, 184
Bme1390I CCNGG 3 cut(s) 18, 221, 251
Bme18I GGWCC 1 cut(s) 73
BmeT110I CYCGRG 1 cut(s) 56
BmgT120I GGNCC 1 cut(s) 73
BmiI GGNNCC 2 cut(s) 91, 255
BmrFI CCNGG 3 cut(s) 18, 221, 251
BpuMI CCSGG 2 cut(s) 221, 251
BsaJI CCNNGG 2 cut(s) 16, 123
BsaWI WCCGGW 3 cut(s) 86, 92, 205
Bsc4I CCNNNNNNNGG 2 cut(s) 17, 235
Bse118I RCCGGY 6 cut(s) 61, 65, 189, 193, 205, 224
BseAI TCCGGA 1 cut(s) 92
BseBI CCWGG 1 cut(s) 18
BseDI CCNNGG 2 cut(s) 16, 123
BseLI CCNNNNNNNGG 2 cut(s) 17, 235
BseRI GAGGAG 1 cut(s) 73
BseX3I CGGCCG 4 cut(s) 63, 191, 222, 226
BseXI GCAGC 1 cut(s) 180
Bsh1285I CGRYCG 4 cut(s) 66, 194, 225, 229
BshFI GGCC 4 cut(s) 65, 193, 224, 228
BshTI ACCGGT 1 cut(s) 205
BsiEI CGRYCG 4 cut(s) 66, 194, 225, 229
BsiHKCI CYCGRG 1 cut(s) 56
BslFI GGGAC 1 cut(s) 253
BslI CCNNNNNNNGG 2 cut(s) 17, 235
BsmFI GGGAC 1 cut(s) 253
BsnI GGCC 4 cut(s) 65, 193, 224, 228
BsoBI CYCGRG 1 cut(s) 56
Bsp1286I GDGCHC 1 cut(s) 256
Bsp13I TCCGGA 1 cut(s) 92
Bsp1407I TGTACA 1 cut(s) 131
BspACI CCGC 2 cut(s) 182, 257
BspANI GGCC 4 cut(s) 65, 193, 224, 228
BspEI TCCGGA 1 cut(s) 92
BspLI GGNNCC 2 cut(s) 91, 255
BsrFI RCCGGY 6 cut(s) 61, 65, 189, 193, 205, 224
BsrGI TGTACA 1 cut(s) 131
BssAI RCCGGY 6 cut(s) 61, 65, 189, 193, 205, 224
BssECI CCNNGG 2 cut(s) 16, 123
BssT1I CCWWGG 1 cut(s) 123
Bst2UI CCWGG 1 cut(s) 18
Bst4CI ACNGT 2 cut(s) 32, 52
BstAUI TGTACA 1 cut(s) 131
BstC8I GCNNGC 4 cut(s) 63, 187, 191, 226
BstMCI CGRYCG 4 cut(s) 66, 194, 225, 229
BstMWI GCNNNNNNNGC 1 cut(s) 134
BstNI CCWGG 1 cut(s) 18
BstNSI RCATGY 2 cut(s) 121, 132
BstSCI CCNGG 3 cut(s) 16, 219, 249
BstV1I GCAGC 1 cut(s) 180
BstZI CGGCCG 4 cut(s) 63, 191, 222, 226
BsuRI GGCC 4 cut(s) 65, 193, 224, 228
Cac8I GCNNGC 4 cut(s) 63, 187, 191, 226
Cfr10I RCCGGY 6 cut(s) 61, 65, 189, 193, 205, 224
Cfr13I GGNCC 1 cut(s) 73
CpoI CGGWCCG 1 cut(s) 73
Csp6I GTAC 1 cut(s) 132
CspAI ACCGGT 1 cut(s) 205
CspI CGGWCCG 1 cut(s) 73
CviAII CATG 2 cut(s) 118, 129
CviQI GTAC 1 cut(s) 132
EaeI YGGCCR 4 cut(s) 63, 191, 222, 226
EagI CGGCCG 4 cut(s) 63, 191, 222, 226
EclXI CGGCCG 4 cut(s) 63, 191, 222, 226
Eco130I CCWWGG 1 cut(s) 123
Eco24I GRGCYC 1 cut(s) 256
Eco47I GGWCC 1 cut(s) 73
Eco52I CGGCCG 4 cut(s) 63, 191, 222, 226
Eco88I CYCGRG 1 cut(s) 56
EcoRII CCWGG 1 cut(s) 16
EcoT14I CCWWGG 1 cut(s) 123
EcoT38I GRGCYC 1 cut(s) 256
ErhI CCWWGG 1 cut(s) 123
FaeI CATG 2 cut(s) 121, 132
FaiI YATR 2 cut(s) 119, 130
FaqI GGGAC 1 cut(s) 253
FatI CATG 2 cut(s) 117, 128
Fnu4HI GCNGC 2 cut(s) 169, 183
FriOI GRGCYC 1 cut(s) 256
FseI GGCCGGCC 1 cut(s) 228
Fsp4HI GCNGC 2 cut(s) 169, 183
GluI GCNGC 2 cut(s) 169, 183
HaeIII GGCC 4 cut(s) 65, 193, 224, 228
Hin1II CATG 2 cut(s) 121, 132
HinfI GANTC 2 cut(s) 40, 241
HphI GGTGA 1 cut(s) 195
Hpy188I TCNGA 2 cut(s) 77, 214
Hpy188III TCNNGA 4 cut(s) 44, 56, 93, 154
Hpy99I CGWCG 1 cut(s) 32
HpyCH4III ACNGT 2 cut(s) 32, 52
HpyCH4V TGCA 1 cut(s) 117
HpyF10VI GCNNNNNNNGC 1 cut(s) 134
Hsp92II CATG 2 cut(s) 121, 132
Kpn2I TCCGGA 1 cut(s) 92
KroI GCCGGC 3 cut(s) 61, 189, 224
KroNI GCCGGC 3 cut(s) 63, 191, 226
LmnI GCTCC 1 cut(s) 259
Lsp1109I GCAGC 1 cut(s) 180
MboII GAAGA 1 cut(s) 192
MhlI GDGCHC 1 cut(s) 256
MluCI AATT 1 cut(s) 107
MlyI GAGTC 2 cut(s) 34, 235
MmeI TCCRAC 1 cut(s) 192
MnlI CCTC 4 cut(s) 89, 91, 94, 171
MroI TCCGGA 1 cut(s) 92
MroNI GCCGGC 3 cut(s) 61, 189, 224
MspR9I CCNGG 3 cut(s) 18, 221, 251
MvaI CCWGG 1 cut(s) 18
MwoI GCNNNNNNNGC 1 cut(s) 134
NaeI GCCGGC 3 cut(s) 63, 191, 226
NciI CCSGG 2 cut(s) 221, 251
NgoMIV GCCGGC 3 cut(s) 61, 189, 224
NlaIII CATG 2 cut(s) 121, 132
NlaIV GGNNCC 2 cut(s) 91, 255
NspI RCATGY 2 cut(s) 121, 132
PaeR7I CTCGAG 1 cut(s) 56
PdiI GCCGGC 3 cut(s) 63, 191, 226
PinAI ACCGGT 1 cut(s) 205
PkrI GCNGC 2 cut(s) 170, 184
PleI GAGTC 2 cut(s) 34, 235
PpsI GAGTC 2 cut(s) 34, 235
Psp6I CCWGG 1 cut(s) 16
PspGI CCWGG 1 cut(s) 16
PspN4I GGNNCC 2 cut(s) 91, 255
PspPI GGNCC 1 cut(s) 73
RigI GGCCGGCC 1 cut(s) 228
RsaI GTAC 1 cut(s) 133
RsaNI GTAC 1 cut(s) 132
Rsr2I CGGWCCG 1 cut(s) 73
RsrII CGGWCCG 1 cut(s) 73
SatI GCNGC 2 cut(s) 169, 183
Sau96I GGNCC 1 cut(s) 73
SchI GAGTC 2 cut(s) 34, 235
ScrFI CCNGG 3 cut(s) 18, 221, 251
SduI GDGCHC 1 cut(s) 256
SetI ASST 3 cut(s) 83, 139, 173
Sfr274I CTCGAG 1 cut(s) 56
SgrAI CRCCGGYG 1 cut(s) 205
SinI GGWCC 1 cut(s) 73
SlaI CTCGAG 1 cut(s) 56
SmlI CTYRAG 1 cut(s) 56
SmoI CTYRAG 1 cut(s) 56
Sse9I AATT 1 cut(s) 107
SsiI CCGC 2 cut(s) 182, 257
StyD4I CCNGG 3 cut(s) 16, 219, 249
StyI CCWWGG 1 cut(s) 123
TaaI ACNGT 2 cut(s) 32, 52
TaqI TCGA 1 cut(s) 57
TaqII GACCGA 1 cut(s) 61
TasI AATT 1 cut(s) 107
TatI WGTACW 1 cut(s) 131
TauI GCSGC 1 cut(s) 185
TseI GCWGC 1 cut(s) 168
TspDTI ATGAA 1 cut(s) 251
VpaK11BI GGWCC 1 cut(s) 73
XceI RCATGY 2 cut(s) 121, 132
XhoI CTCGAG 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.