Prupe.2G140000_v2.0.a1

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0014547
Physical Location & Seq
Reverse (-)
19679708 .. 19682219
2512 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G140000.1

Sequence Viewer

Length: 741 bp
ATGTTTGTTCCTTCAAATCTTCTACCCCACTGGCTTGACGTCCTGCTGTCTGAAAAGTTCTACAACGCTTGCATAATTCATGAGGAGGCAAAGAAGAACGAGAAGAACATCTACTGCTTGGACTGTTGCATGAGTCTCTGCCCTCACTGCTTGAATCCTCATCGCCCTCACCGACTTTTGCAGATAAGGAGGTATGTTTACCACGACGTTGTAAGACTGGATGATGCTGCCAAGCTAATTGACTGTTCTTCTGTTCAATCGTACATAAGCAACAGTGCAAAAGTGGTGTTTTTAAACCAAAGGCCACAAACAAGGAATTGCAGAGGCTCCGGCAACATCTGCAGCACCTGTGACAGGAGCCTGCAAGACCCATATCTCTTTTGCTCCCTCTACTGCAAGATTGATTACGTTCTAAGAACAGAAGGTGGCCTGTCCAAGTACCTTCTAGAGTGCAAATTCATGTCCTTACCCGAATCCGGTTTAGACGACGGTCAGATGACTCCTGACTCGGTTCTGGAACCGGCCGGTTCAACCCGAACCTCGTCCGGGTCATGCGGGTTCGGTGAGGTGGGGTGTCTGGCCCTAGCCTGTACTGCTACGACCGAGATTGTGAGGAAAAAGAGGAGTAGCATGTCAACGTATCGGACAGCTTGTCGGCCCGTTTTTTCACCAGTGTCCGAAATTTCGGCCGGGTTGATGAACCGGCGAAAGGGGACGCCACATCGGGCTCCGCTGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
PLATZ

Protein Analysis

247

Amino Acids

27.6

Weight (kDa)

8.63

Isoelectric Point (pI)

69.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014547)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G60670
fragaria_vesca FvH4_7g11220
malus_domestica MD02G1208800.v1.1 MD07G1117000.v1.1
prunus_persica Prupe.2G140000_v2.0.a1
pyrus_communis pycom07g10810
rosa_chinensis RchiOBHm_Chr1g0349351
rosa_laevigata RLG00000028556
rosa_multiflora Rmu_co8365383.1_g000001 Rmu_sc0031211.1_g000001
rosa_roxburghii Rroxscaffold_4G00305630
rosa_rugosa Rorug01G0202900
rosa_samantha Rh1AG220300 Rh1BG186300 Rh1CG205400 Rh1DG215800
rosa_wichuraiana Rw1G018720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 42
AciI CCGC 2 cut(s) 555, 731
AcoI YGGCCR 2 cut(s) 522, 687
AcsI RAATTY 2 cut(s) 455, 681
AcyI GRCGYC 2 cut(s) 39, 716
AfaI GTAC 3 cut(s) 263, 440, 592
AfiI CCNNNNNNNGG 4 cut(s) 354, 476, 546, 709
AgsI TTSAA 4 cut(s) 15, 154, 257, 531
AhdI GACNNNNNGTC 1 cut(s) 651
AluBI AGCT 2 cut(s) 235, 650
AluI AGCT 2 cut(s) 235, 650
Alw26I GTCTC 1 cut(s) 140
AlwNI CAGNNNCTG 1 cut(s) 348
AoxI GGCC 6 cut(s) 302, 427, 522, 579, 656, 687
ApeKI GCWGC 2 cut(s) 227, 342
ApoI RAATTY 2 cut(s) 455, 681
AspS9I GGNCC 2 cut(s) 580, 657
AsuC2I CCSGG 2 cut(s) 547, 691
AsuHPI GGTGA 3 cut(s) 161, 575, 660
BanII GRGCYC 1 cut(s) 730
BarI GAAGNNNNNNTAC 2 cut(s) 95, 127
BbvI GCAGC 2 cut(s) 214, 354
BcnI CCSGG 2 cut(s) 547, 691
BcoDI GTCTC 1 cut(s) 140
BfaI CTAG 2 cut(s) 446, 584
BfmI CTRYAG 1 cut(s) 340
BisI GCNGC 2 cut(s) 228, 343
BlsI GCNGC 2 cut(s) 229, 344
Bme1390I CCNGG 2 cut(s) 547, 691
BmeRI GACNNNNNGTC 1 cut(s) 651
BmgT120I GGNCC 2 cut(s) 580, 657
BmiI GGNNCC 4 cut(s) 328, 359, 519, 729
BmrFI CCNGG 2 cut(s) 547, 691
BmsI GCATC 1 cut(s) 214
BoxI GACNNNNGTC 1 cut(s) 489
BpuMI CCSGG 2 cut(s) 547, 691
BsaHI GRCGYC 2 cut(s) 39, 716
BsaWI WCCGGW 1 cut(s) 476
Bsc4I CCNNNNNNNGG 4 cut(s) 354, 476, 546, 709
Bse118I RCCGGY 3 cut(s) 520, 524, 702
Bse1I ACTGG 3 cut(s) 35, 222, 671
BseGI GGATG 1 cut(s) 226
BseLI CCNNNNNNNGG 4 cut(s) 354, 476, 546, 709
BseNI ACTGG 3 cut(s) 35, 222, 671
BseRI GAGGAG 2 cut(s) 98, 637
BseX3I CGGCCG 2 cut(s) 522, 687
BseXI GCAGC 2 cut(s) 214, 354
Bsh1285I CGRYCG 3 cut(s) 525, 603, 690
BshFI GGCC 6 cut(s) 304, 429, 524, 581, 658, 689
BsiEI CGRYCG 3 cut(s) 525, 603, 690
BsiSI CCGG 7 cut(s) 330, 477, 521, 525, 546, 690, 703
BslFI GGGAC 1 cut(s) 727
BslI CCNNNNNNNGG 4 cut(s) 354, 476, 546, 709
BsmAI GTCTC 1 cut(s) 140
BsmFI GGGAC 1 cut(s) 727
BsnI GGCC 6 cut(s) 304, 429, 524, 581, 658, 689
Bsp1286I GDGCHC 1 cut(s) 730
BspACI CCGC 2 cut(s) 555, 731
BspANI GGCC 6 cut(s) 304, 429, 524, 581, 658, 689
BspHI TCATGA 1 cut(s) 79
BspLI GGNNCC 4 cut(s) 328, 359, 519, 729
BspMAI CTGCAG 1 cut(s) 344
BsrFI RCCGGY 3 cut(s) 520, 524, 702
BsrI ACTGG 3 cut(s) 35, 222, 671
BssAI RCCGGY 3 cut(s) 520, 524, 702
BssNI GRCGYC 2 cut(s) 39, 716
Bst4CI ACNGT 4 cut(s) 125, 245, 275, 491
BstACI GRCGYC 2 cut(s) 39, 716
BstAPI GCANNNNNTGC 1 cut(s) 339
BstC8I GCNNGC 2 cut(s) 70, 362
BstDEI CTNAG 1 cut(s) 413
BstENI CCTNNNNNAGG 1 cut(s) 352
BstF5I GGATG 1 cut(s) 226
BstMAI GTCTC 1 cut(s) 140
BstMCI CGRYCG 3 cut(s) 525, 603, 690
BstMWI GCNNNNNNNGC 3 cut(s) 147, 339, 593
BstNSI RCATGY 1 cut(s) 634
BstPAI GACNNNNGTC 1 cut(s) 489
BstSCI CCNGG 2 cut(s) 545, 689
BstSFI CTRYAG 1 cut(s) 340
BstV1I GCAGC 2 cut(s) 214, 354
BstZI CGGCCG 2 cut(s) 522, 687
BsuRI GGCC 6 cut(s) 304, 429, 524, 581, 658, 689
BtgZI GCGATG 1 cut(s) 146
BtsCI GGATG 1 cut(s) 226
BtsI GCAGTG 1 cut(s) 145
BtsIMutI CAGTG 4 cut(s) 28, 145, 280, 678
Cac8I GCNNGC 2 cut(s) 70, 362
CaiI CAGNNNCTG 1 cut(s) 348
CciI TCATGA 1 cut(s) 79
Cfr10I RCCGGY 3 cut(s) 520, 524, 702
Cfr13I GGNCC 2 cut(s) 580, 657
CseI GACGC 1 cut(s) 724
Csp6I GTAC 3 cut(s) 262, 439, 591
CviAII CATG 5 cut(s) 80, 130, 460, 552, 631
CviQI GTAC 3 cut(s) 262, 439, 591
DdeI CTNAG 1 cut(s) 413
DraI TTTAAA 1 cut(s) 294
DriI GACNNNNNGTC 1 cut(s) 651
EaeI YGGCCR 2 cut(s) 522, 687
EagI CGGCCG 2 cut(s) 522, 687
Eam1105I GACNNNNNGTC 1 cut(s) 651
EclXI CGGCCG 2 cut(s) 522, 687
Eco24I GRGCYC 1 cut(s) 730
Eco52I CGGCCG 2 cut(s) 522, 687
EcoNI CCTNNNNNAGG 1 cut(s) 352
EcoT38I GRGCYC 1 cut(s) 730
FaeI CATG 5 cut(s) 83, 133, 463, 555, 634
FaiI YATR 9 cut(s) 74, 81, 131, 195, 266, 373, 461, 553, 632
FaqI GGGAC 1 cut(s) 727
FatI CATG 5 cut(s) 79, 129, 459, 551, 630
FauI CCCGC 1 cut(s) 548
Fnu4HI GCNGC 2 cut(s) 228, 343
FokI GGATG 1 cut(s) 233
FriOI GRGCYC 1 cut(s) 730
Fsp4HI GCNGC 2 cut(s) 228, 343
FspBI CTAG 2 cut(s) 446, 584
GluI GCNGC 2 cut(s) 228, 343
HaeIII GGCC 6 cut(s) 304, 429, 524, 581, 658, 689
HapII CCGG 7 cut(s) 330, 477, 521, 525, 546, 690, 703
HgaI GACGC 1 cut(s) 724
Hin1I GRCGYC 2 cut(s) 39, 716
Hin1II CATG 5 cut(s) 83, 133, 463, 555, 634
HincII GTYRAC 1 cut(s) 636
HindII GTYRAC 1 cut(s) 636
HinfI GANTC 5 cut(s) 133, 154, 473, 499, 506
HpaII CCGG 7 cut(s) 330, 477, 521, 525, 546, 690, 703
HphI GGTGA 3 cut(s) 161, 575, 660
Hpy166II GTNNAC 2 cut(s) 199, 636
Hpy188I TCNGA 4 cut(s) 52, 495, 645, 679
Hpy188III TCNNGA 4 cut(s) 80, 446, 503, 515
Hpy8I GTNNAC 2 cut(s) 199, 636
Hpy99I CGWCG 2 cut(s) 209, 491
HpyAV CCTTC 3 cut(s) 21, 416, 452
HpyCH4III ACNGT 4 cut(s) 125, 245, 275, 491
HpyCH4IV ACGT 4 cut(s) 39, 207, 408, 638
HpyCH4V TGCA 9 cut(s) 72, 129, 181, 278, 321, 342, 364, 396, 453
HpyF10VI GCNNNNNNNGC 3 cut(s) 147, 339, 593
HpyF3I CTNAG 1 cut(s) 413
HpySE526I ACGT 4 cut(s) 39, 207, 408, 638
Hsp92I GRCGYC 2 cut(s) 39, 716
Hsp92II CATG 5 cut(s) 83, 133, 463, 555, 634
LmnI GCTCC 4 cut(s) 332, 357, 389, 733
Lsp1109I GCAGC 2 cut(s) 214, 354
LweI GCATC 1 cut(s) 214
MaeI CTAG 2 cut(s) 446, 584
MaeII ACGT 4 cut(s) 39, 207, 408, 638
MaeIII GTNAC 1 cut(s) 350
MboII GAAGA 4 cut(s) 11, 106, 115, 240
MhlI GDGCHC 1 cut(s) 730
MluCI AATT 5 cut(s) 75, 237, 316, 455, 681
MlyI GAGTC 3 cut(s) 142, 493, 500
MseI TTAA 1 cut(s) 293
MspA1I CMGCKG 1 cut(s) 733
MspI CCGG 7 cut(s) 330, 477, 521, 525, 546, 690, 703
MspR9I CCNGG 2 cut(s) 547, 691
MwoI GCNNNNNNNGC 3 cut(s) 147, 339, 593
NciI CCSGG 2 cut(s) 547, 691
NlaIII CATG 5 cut(s) 83, 133, 463, 555, 634
NlaIV GGNNCC 4 cut(s) 328, 359, 519, 729
NmuCI GTSAC 1 cut(s) 350
NspI RCATGY 1 cut(s) 634
PagI TCATGA 1 cut(s) 79
PcsI WCGNNNNNNNCGW 1 cut(s) 169
PfeI GAWTC 2 cut(s) 154, 473
PkrI GCNGC 2 cut(s) 229, 344
PleI GAGTC 3 cut(s) 141, 493, 500
PpsI GAGTC 3 cut(s) 141, 493, 500
PshAI GACNNNNGTC 1 cut(s) 489
PspN4I GGNNCC 4 cut(s) 328, 359, 519, 729
PspPI GGNCC 2 cut(s) 580, 657
PstI CTGCAG 1 cut(s) 344
PstNI CAGNNNCTG 1 cut(s) 348
RsaI GTAC 3 cut(s) 263, 440, 592
RsaNI GTAC 3 cut(s) 262, 439, 591
SaqAI TTAA 1 cut(s) 293
SatI GCNGC 2 cut(s) 228, 343
Sau96I GGNCC 2 cut(s) 580, 657
SchI GAGTC 3 cut(s) 142, 493, 500
ScrFI CCNGG 2 cut(s) 547, 691
SduI GDGCHC 1 cut(s) 730
SfaNI GCATC 1 cut(s) 214
SfcI CTRYAG 1 cut(s) 340
Sse9I AATT 5 cut(s) 75, 237, 316, 455, 681
SsiI CCGC 2 cut(s) 555, 731
SspMI CTAG 2 cut(s) 446, 584
StyD4I CCNGG 2 cut(s) 545, 689
TaaI ACNGT 4 cut(s) 125, 245, 275, 491
TaiI ACGT 4 cut(s) 42, 210, 411, 641
TaqII GACCGA 1 cut(s) 617
TasI AATT 5 cut(s) 75, 237, 316, 455, 681
TatI WGTACW 1 cut(s) 590
TfiI GAWTC 2 cut(s) 154, 473
Tru1I TTAA 1 cut(s) 293
Tru9I TTAA 1 cut(s) 293
TscAI CASTG 4 cut(s) 35, 152, 280, 678
TseFI GTSAC 1 cut(s) 350
TseI GCWGC 2 cut(s) 227, 342
Tsp45I GTSAC 1 cut(s) 350
TspDTI ATGAA 3 cut(s) 68, 448, 713
TspRI CASTG 4 cut(s) 35, 152, 280, 678
XagI CCTNNNNNAGG 1 cut(s) 352
XapI RAATTY 2 cut(s) 455, 681
XbaI TCTAGA 1 cut(s) 445
XceI RCATGY 1 cut(s) 634
XspI CTAG 2 cut(s) 446, 584
ZraI GACGTC 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.