AT3G60810

Protein of unknown function (DUF1499)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0010909
Physical Location & Seq
Forward (+)
22470519 .. 22471906
1388 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G60810.1

Sequence Viewer

Length: 645 bp
ATGGCTTCCATGGCGTCACCGACCACTTGCTTGTACCACCACAAATGCCGGAGAAAACTTGTTTTCTATGCCCGTCGTATCAGTGCCTCGATTCCAGAGACTTCATATGACAAACATCCGAAGCTAATTGGTCGAAGAGATATCATTCTTAGGAGCAGTGAATTAGCTATGATCGGAGCCATATTCCAGCTTAGTGGGAAAAAACCAGATTATCTAGGAGTACAAAAGAACGAGAGATTGGCTCTATGTCCTGCCACTAATAACTGTATCTCCACTTCTGAGAATATCAGTGATCGAGTGCATTATGCTCCACCATGGAACTATAATGGAGGAAGGAAAACACCTGTGAACAGGCAAGTTGCAATGAAAGAGCTTCTTAATGTGATTAAGTCGGTGAAACCGGATAAATTTACACCGCGGATTGTGGAGAAGAAGGATGACTACGTTCATGTGGAATATGAAAGTCCAATCTTGGGGTTAGTAGACGATGTTGAATTCTTGTTCACTCCTGGGAAGAACTCGAAAGTGGAATATCGATCTGCATCCCGTAAAGGGAACTTCGACTTTGATGTCAATAGAAAGCGAATAAAGGCATTGCGACAAGAGCTAGAGAAGAAGGGATGGGTATCAGAGAACAGCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1499

Protein Analysis

214

Amino Acids

24.57

Weight (kDa)

9.67

Isoelectric Point (pI)

46.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1499 PF07386 80 - 203 1.4e-33 Protein of unknown function (DUF1499)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010909)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G60810 AT3G60810
fragaria_vesca FvH4_7g11910 FvH4_7g11910 FvH4_7g11910
malus_domestica MD02G1204100.v1.1
prunus_persica Prupe.2G145700_v2.0.a1 Prupe.2G145700_v2.0.a1
pyrus_communis pycom02g16640
rosa_chinensis RchiOBHm_Chr1g0350591
rosa_laevigata RLG00000028470
rosa_multiflora Rmu_sc0009041.1_g000002 Rmu_sc0014368.1_g000005
rosa_roxburghii Rroxscaffold_4G00304690
rosa_rugosa Rorug01G0212400
rosa_samantha Rh1AG226900 Rh1BG195600 Rh1CG211700 Rh1DG223700
rosa_wichuraiana Rw1G019610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 569
AccI GTMKAC 1 cut(s) 483
AccII CGCG 1 cut(s) 418
AciI CCGC 2 cut(s) 416, 418
AcsI RAATTY 2 cut(s) 407, 494
AcyI GRCGYC 1 cut(s) 14
AfaI GTAC 2 cut(s) 35, 222
AfiI CCNNNNNNNGG 2 cut(s) 473, 552
AgsI TTSAA 1 cut(s) 494
AjnI CCWGG 1 cut(s) 508
AjuI GAANNNNNNNTTGG 2 cut(s) 221, 253
AluBI AGCT 6 cut(s) 124, 167, 190, 373, 607, 639
AluI AGCT 6 cut(s) 124, 167, 190, 373, 607, 639
Alw26I GTCTC 1 cut(s) 92
AlwNI CAGNNNCTG 1 cut(s) 642
ApoI RAATTY 2 cut(s) 407, 494
Asp700I GAANNNNTTC 1 cut(s) 638
AsuHPI GGTGA 2 cut(s) 9, 406
BarI GAAGNNNNNNTAC 4 cut(s) 259, 291, 425, 457
BccI CCATC 1 cut(s) 615
BciT130I CCWGG 1 cut(s) 510
BcoDI GTCTC 1 cut(s) 92
BfaI CTAG 2 cut(s) 215, 608
Bme1390I CCNGG 1 cut(s) 510
BmiI GGNNCC 1 cut(s) 178
BmrFI CCNGG 1 cut(s) 510
BmsI GCATC 1 cut(s) 551
BplI GAGNNNNNCTC 2 cut(s) 226, 258
Bsa29I ATCGAT 1 cut(s) 535
BsaBI GATNNNNATC 2 cut(s) 541, 625
BsaHI GRCGYC 1 cut(s) 14
BsaJI CCNNGG 4 cut(s) 9, 314, 416, 509
BsaWI WCCGGW 1 cut(s) 400
BsaXI ACNNNNNCTCC 2 cut(s) 254, 284
Bsc4I CCNNNNNNNGG 2 cut(s) 473, 552
Bse3DI GCAATG 2 cut(s) 369, 593
Bse8I GATNNNNATC 2 cut(s) 541, 625
BseBI CCWGG 1 cut(s) 510
BseCI ATCGAT 1 cut(s) 535
BseDI CCNNGG 4 cut(s) 9, 314, 416, 509
BseGI GGATG 4 cut(s) 115, 442, 542, 626
BseJI GATNNNNATC 2 cut(s) 541, 625
BseLI CCNNNNNNNGG 2 cut(s) 473, 552
BseMI GCAATG 2 cut(s) 369, 593
BseMII CTCAG 1 cut(s) 270
Bsh1236I CGCG 1 cut(s) 418
BshVI ATCGAT 1 cut(s) 535
BsiSI CCGG 2 cut(s) 49, 401
BslI CCNNNNNNNGG 2 cut(s) 473, 552
BsmAI GTCTC 1 cut(s) 92
Bsp143I GATC 3 cut(s) 171, 292, 536
Bsp19I CCATGG 2 cut(s) 9, 314
BspACI CCGC 2 cut(s) 416, 418
BspCNI CTCAG 1 cut(s) 271
BspDI ATCGAT 1 cut(s) 535
BspFNI CGCG 1 cut(s) 418
BspLI GGNNCC 1 cut(s) 178
BsrDI GCAATG 2 cut(s) 369, 593
BssECI CCNNGG 4 cut(s) 9, 314, 416, 509
BssMI GATC 3 cut(s) 171, 292, 536
BssNI GRCGYC 1 cut(s) 14
BssT1I CCWWGG 2 cut(s) 9, 314
Bst2UI CCWGG 1 cut(s) 510
Bst4CI ACNGT 1 cut(s) 266
Bst6I CTCTTC 1 cut(s) 130
BstACI GRCGYC 1 cut(s) 14
BstDEI CTNAG 3 cut(s) 149, 191, 279
BstDSI CCRYGG 3 cut(s) 9, 314, 416
BstF5I GGATG 4 cut(s) 115, 442, 542, 626
BstFNI CGCG 1 cut(s) 418
BstKTI GATC 3 cut(s) 174, 295, 539
BstMAI GTCTC 1 cut(s) 92
BstMBI GATC 3 cut(s) 171, 292, 536
BstMWI GCNNNNNNNGC 2 cut(s) 11, 604
BstNI CCWGG 1 cut(s) 510
BstSCI CCNGG 1 cut(s) 508
BstUI CGCG 1 cut(s) 418
BstXI CCANNNNNNTGG 1 cut(s) 194
Bsu15I ATCGAT 1 cut(s) 535
BsuTUI ATCGAT 1 cut(s) 535
BtgI CCRYGG 3 cut(s) 9, 314, 416
BtsCI GGATG 4 cut(s) 115, 442, 542, 626
BtsI GCAGTG 1 cut(s) 163
BtsIMutI CAGTG 3 cut(s) 88, 163, 295
CaiI CAGNNNCTG 1 cut(s) 642
Cfr42I CCGCGG 1 cut(s) 419
ClaI ATCGAT 1 cut(s) 535
CseI GACGC 1 cut(s) 3
Csp6I GTAC 2 cut(s) 34, 221
CviAII CATG 3 cut(s) 10, 315, 449
CviJI RGCY 9 cut(s) 5, 124, 167, 179, 190, 242, 373, 607, 639
CviKI_1 RGCY 9 cut(s) 5, 124, 167, 179, 190, 242, 373, 607, 639
CviQI GTAC 2 cut(s) 34, 221
DdeI CTNAG 3 cut(s) 149, 191, 279
DpnI GATC 3 cut(s) 173, 294, 538
DpnII GATC 3 cut(s) 171, 292, 536
DrdI GACNNNNNNGTC 1 cut(s) 569
DseDI GACNNNNNNGTC 1 cut(s) 569
Eam1104I CTCTTC 1 cut(s) 130
EarI CTCTTC 1 cut(s) 130
Eco130I CCWWGG 2 cut(s) 9, 314
Eco32I GATATC 1 cut(s) 142
EcoRI GAATTC 1 cut(s) 494
EcoRII CCWGG 1 cut(s) 508
EcoRV GATATC 1 cut(s) 142
EcoT14I CCWWGG 2 cut(s) 9, 314
ErhI CCWWGG 2 cut(s) 9, 314
FaeI CATG 3 cut(s) 13, 318, 452
FalI AAGNNNNNCTT 2 cut(s) 360, 392
FatI CATG 3 cut(s) 9, 314, 448
FauNDI CATATG 1 cut(s) 106
FblI GTMKAC 1 cut(s) 483
FokI GGATG 4 cut(s) 102, 449, 529, 633
FspBI CTAG 2 cut(s) 215, 608
HapII CCGG 2 cut(s) 49, 401
HgaI GACGC 1 cut(s) 3
Hin1I GRCGYC 1 cut(s) 14
Hin1II CATG 3 cut(s) 13, 318, 452
HinfI GANTC 1 cut(s) 91
HpaII CCGG 2 cut(s) 49, 401
HphI GGTGA 2 cut(s) 9, 406
Hpy166II GTNNAC 3 cut(s) 349, 484, 504
Hpy188I TCNGA 5 cut(s) 120, 176, 280, 631, 644
Hpy188III TCNNGA 1 cut(s) 95
Hpy8I GTNNAC 3 cut(s) 349, 484, 504
Hpy99I CGWCG 1 cut(s) 78
HpyAV CCTTC 3 cut(s) 327, 427, 610
HpyCH4III ACNGT 1 cut(s) 266
HpyCH4IV ACGT 1 cut(s) 444
HpyCH4V TGCA 3 cut(s) 301, 362, 542
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 604
HpyF3I CTNAG 3 cut(s) 149, 191, 279
HpySE526I ACGT 1 cut(s) 444
Hsp92I GRCGYC 1 cut(s) 14
Hsp92II CATG 3 cut(s) 13, 318, 452
KspI CCGCGG 1 cut(s) 419
Kzo9I GATC 3 cut(s) 171, 292, 536
LmnI GCTCC 3 cut(s) 153, 176, 313
LweI GCATC 1 cut(s) 551
MaeI CTAG 2 cut(s) 215, 608
MaeII ACGT 1 cut(s) 444
MaeIII GTNAC 1 cut(s) 15
MalI GATC 3 cut(s) 173, 294, 538
MboI GATC 3 cut(s) 171, 292, 536
MboII GAAGA 4 cut(s) 147, 442, 526, 625
MluCI AATT 4 cut(s) 126, 161, 407, 494
MnlI CCTC 2 cut(s) 97, 323
MroXI GAANNNNTTC 1 cut(s) 638
MseI TTAA 2 cut(s) 378, 387
MspA1I CMGCKG 1 cut(s) 418
MspI CCGG 2 cut(s) 49, 401
MspR9I CCNGG 1 cut(s) 510
MvaI CCWGG 1 cut(s) 510
MvnI CGCG 1 cut(s) 418
MwoI GCNNNNNNNGC 2 cut(s) 11, 604
NcoI CCATGG 2 cut(s) 9, 314
NdeI CATATG 1 cut(s) 106
NdeII GATC 3 cut(s) 171, 292, 536
NlaIII CATG 3 cut(s) 13, 318, 452
NlaIV GGNNCC 1 cut(s) 178
NmuCI GTSAC 1 cut(s) 15
PdmI GAANNNNTTC 1 cut(s) 638
PfeI GAWTC 1 cut(s) 91
Psp6I CCWGG 1 cut(s) 508
PspGI CCWGG 1 cut(s) 508
PspN4I GGNNCC 1 cut(s) 178
PstNI CAGNNNCTG 1 cut(s) 642
RsaI GTAC 2 cut(s) 35, 222
RsaNI GTAC 2 cut(s) 34, 221
SacII CCGCGG 1 cut(s) 419
SaqAI TTAA 2 cut(s) 378, 387
Sau3AI GATC 3 cut(s) 171, 292, 536
ScrFI CCNGG 1 cut(s) 510
SetI ASST 8 cut(s) 126, 169, 192, 346, 375, 447, 609, 641
SfaNI GCATC 1 cut(s) 551
Sfr303I CCGCGG 1 cut(s) 419
SgrBI CCGCGG 1 cut(s) 419
Sse9I AATT 4 cut(s) 126, 161, 407, 494
SsiI CCGC 2 cut(s) 416, 418
SspMI CTAG 2 cut(s) 215, 608
StyD4I CCNGG 1 cut(s) 508
StyI CCWWGG 2 cut(s) 9, 314
TaaI ACNGT 1 cut(s) 266
TaiI ACGT 1 cut(s) 447
TaqI TCGA 6 cut(s) 89, 133, 295, 521, 535, 561
TasI AATT 4 cut(s) 126, 161, 407, 494
TatI WGTACW 1 cut(s) 220
TfiI GAWTC 1 cut(s) 91
Tru1I TTAA 2 cut(s) 378, 387
Tru9I TTAA 2 cut(s) 378, 387
TscAI CASTG 3 cut(s) 88, 163, 295
TseFI GTSAC 1 cut(s) 15
Tsp45I GTSAC 1 cut(s) 15
TspDTI ATGAA 4 cut(s) 93, 380, 437, 474
TspRI CASTG 3 cut(s) 88, 163, 295
XapI RAATTY 2 cut(s) 407, 494
XmiI GTMKAC 1 cut(s) 483
XmnI GAANNNNTTC 1 cut(s) 638
XspI CTAG 2 cut(s) 215, 608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.