Rh1BG195600

Protein of unknown function (DUF1499)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0010909
Physical Location & Seq
Forward (+)
31219741 .. 31221319
1579 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG195600.1

Sequence Viewer

Length: 684 bp
ATGGCTTCCATGGCATACCCAACCCCCTCCTCCTCCTACTCCTGTTGTTACAAGAATCACACCAAACGCAACATCATTCCCTCCATTCCACATATTACGTTCTGTCAGCAGCAGCAGCAGCAGCCTCATCAGAACGACCACAAATCCACCGACCCAGTCGGTCGAAGGGAGATTATACTGAGGAGTAGCGAATTGGCAGTGGTGGGAGCCATCTTCAACTTCAGCGGTAAAAAGCCAGACTATCTTGGGGTGCAGAAAAACCAACCGGCTTTGGCTCTTTGTCCAGCTACTAAGAATTGCATTTCAACCGCTGAGAATGTCACTGACATTGTCCATTATGCCCCTCCCTGGAACTATAATGGGGGACGTAATAGGAAAAAGCCGGTCAGCAGAGAAGTGGCTATGGAGGAACTTCTCCAAGTGATAAAATCAACAAAGCCGGACAAGTTCACACCGCGGATAATGGAGAAGAAAGATGATTATGTGAGGGTGGAGTACCAGTCCTCAATCTTAGGGTTTGTGGATGATGTTGAGTTTTGGTTTCCACCGGGCAGAGACTCGATAGTGGAGTACAGATCAGCGTCCCGGTTAGGCAACTTCGATTTTGACATCAACAGGAAGAGAATCAAGGCATTGCGACAAGAGTTAGAGAACAAAGGTTGGGCTTCCAAGGACAGCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1499

Protein Analysis

227

Amino Acids

25.99

Weight (kDa)

9.22

Isoelectric Point (pI)

56.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1499 PF07386 91 - 216 1e-33 Protein of unknown function (DUF1499)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010909)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G60810 AT3G60810
fragaria_vesca FvH4_7g11910 FvH4_7g11910 FvH4_7g11910
malus_domestica MD02G1204100.v1.1
prunus_persica Prupe.2G145700_v2.0.a1 Prupe.2G145700_v2.0.a1
pyrus_communis pycom02g16640
rosa_chinensis RchiOBHm_Chr1g0350591
rosa_laevigata RLG00000028470
rosa_multiflora Rmu_sc0009041.1_g000002 Rmu_sc0014368.1_g000005
rosa_roxburghii Rroxscaffold_4G00304690
rosa_rugosa Rorug01G0212400
rosa_samantha Rh1AG226900 Rh1BG195600 Rh1CG211700 Rh1DG223700
rosa_wichuraiana Rw1G019610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 457
AciI CCGC 4 cut(s) 225, 309, 455, 457
AcuI CTGAAG 1 cut(s) 205
AfaI GTAC 2 cut(s) 497, 572
AfiI CCNNNNNNNGG 1 cut(s) 348
AgsI TTSAA 2 cut(s) 217, 306
AjnI CCWGG 1 cut(s) 347
AluBI AGCT 2 cut(s) 287, 678
AluI AGCT 2 cut(s) 287, 678
Alw26I GTCTC 1 cut(s) 549
ApeKI GCWGC 5 cut(s) 109, 112, 115, 118, 121
AsuC2I CCSGG 2 cut(s) 549, 586
BbvI GCAGC 5 cut(s) 121, 124, 127, 130, 133
BccI CCATC 1 cut(s) 218
BciT130I CCWGG 1 cut(s) 349
BcnI CCSGG 2 cut(s) 549, 586
BcoDI GTCTC 1 cut(s) 549
BisI GCNGC 5 cut(s) 110, 113, 116, 119, 122
BlsI GCNGC 5 cut(s) 111, 114, 117, 120, 123
Bme1390I CCNGG 3 cut(s) 349, 549, 586
BmiI GGNNCC 1 cut(s) 208
BmrFI CCNGG 3 cut(s) 349, 549, 586
BmrI ACTGGG 1 cut(s) 149
BmuI ACTGGG 1 cut(s) 149
BpuMI CCSGG 2 cut(s) 549, 586
BsaJI CCNNGG 4 cut(s) 9, 347, 455, 669
BsaXI ACNNNNNCTCC 2 cut(s) 485, 515
Bsc4I CCNNNNNNNGG 1 cut(s) 348
Bse118I RCCGGY 2 cut(s) 265, 382
Bse1I ACTGG 2 cut(s) 155, 499
Bse3DI GCAATG 1 cut(s) 632
BseBI CCWGG 1 cut(s) 349
BseDI CCNNGG 4 cut(s) 9, 347, 455, 669
BseGI GGATG 1 cut(s) 529
BseLI CCNNNNNNNGG 1 cut(s) 348
BseMI GCAATG 1 cut(s) 632
BseMII CTCAG 2 cut(s) 170, 303
BseNI ACTGG 2 cut(s) 155, 499
BseRI GAGGAG 3 cut(s) 19, 22, 196
BseXI GCAGC 5 cut(s) 121, 124, 127, 130, 133
BsgI GTGCAG 1 cut(s) 272
Bsh1236I CGCG 1 cut(s) 457
Bsh1285I CGRYCG 1 cut(s) 163
BsiEI CGRYCG 1 cut(s) 163
BsiSI CCGG 5 cut(s) 266, 383, 440, 548, 586
BslFI GGGAC 2 cut(s) 378, 568
BslI CCNNNNNNNGG 1 cut(s) 348
BsmAI GTCTC 1 cut(s) 549
BsmFI GGGAC 2 cut(s) 378, 568
Bsp143I GATC 1 cut(s) 575
Bsp19I CCATGG 1 cut(s) 9
BspACI CCGC 4 cut(s) 225, 309, 455, 457
BspCNI CTCAG 2 cut(s) 171, 304
BspFNI CGCG 1 cut(s) 457
BspLI GGNNCC 1 cut(s) 208
BsrDI GCAATG 1 cut(s) 632
BsrFI RCCGGY 2 cut(s) 265, 382
BsrI ACTGG 2 cut(s) 155, 499
BssAI RCCGGY 2 cut(s) 265, 382
BssECI CCNNGG 4 cut(s) 9, 347, 455, 669
BssMI GATC 1 cut(s) 575
BssT1I CCWWGG 2 cut(s) 9, 669
Bst2UI CCWGG 1 cut(s) 349
Bst6I CTCTTC 1 cut(s) 614
BstDEI CTNAG 4 cut(s) 179, 291, 312, 511
BstDSI CCRYGG 2 cut(s) 9, 455
BstF5I GGATG 1 cut(s) 529
BstFNI CGCG 1 cut(s) 457
BstKTI GATC 1 cut(s) 578
BstMAI GTCTC 1 cut(s) 549
BstMBI GATC 1 cut(s) 575
BstMCI CGRYCG 1 cut(s) 163
BstMWI GCNNNNNNNGC 4 cut(s) 11, 115, 118, 121
BstNI CCWGG 1 cut(s) 349
BstSCI CCNGG 3 cut(s) 347, 547, 584
BstUI CGCG 1 cut(s) 457
BstV1I GCAGC 5 cut(s) 121, 124, 127, 130, 133
BtgI CCRYGG 2 cut(s) 9, 455
BtsCI GGATG 1 cut(s) 529
BtsI GCAGTG 1 cut(s) 204
BtsIMutI CAGTG 2 cut(s) 204, 321
Cfr10I RCCGGY 2 cut(s) 265, 382
Cfr42I CCGCGG 1 cut(s) 458
CseI GACGC 1 cut(s) 570
Csp6I GTAC 2 cut(s) 496, 571
CviAII CATG 1 cut(s) 10
CviQI GTAC 2 cut(s) 496, 571
DdeI CTNAG 4 cut(s) 179, 291, 312, 511
DpnI GATC 1 cut(s) 577
DpnII GATC 1 cut(s) 575
Eam1104I CTCTTC 1 cut(s) 614
EarI CTCTTC 1 cut(s) 614
Eco130I CCWWGG 2 cut(s) 9, 669
Eco57I CTGAAG 1 cut(s) 205
EcoRII CCWGG 1 cut(s) 347
EcoT14I CCWWGG 2 cut(s) 9, 669
ErhI CCWWGG 2 cut(s) 9, 669
FaeI CATG 1 cut(s) 13
FaiI YATR 8 cut(s) 11, 16, 93, 176, 339, 357, 404, 483
FalI AAGNNNNNCTT 1 cut(s) 662
FaqI GGGAC 2 cut(s) 378, 568
FatI CATG 1 cut(s) 9
Fnu4HI GCNGC 5 cut(s) 110, 113, 116, 119, 122
FokI GGATG 1 cut(s) 536
Fsp4HI GCNGC 5 cut(s) 110, 113, 116, 119, 122
GluI GCNGC 5 cut(s) 110, 113, 116, 119, 122
HapII CCGG 5 cut(s) 266, 383, 440, 548, 586
HgaI GACGC 1 cut(s) 570
Hin1II CATG 1 cut(s) 13
HinfI GANTC 3 cut(s) 55, 557, 624
HpaII CCGG 5 cut(s) 266, 383, 440, 548, 586
Hpy166II GTNNAC 1 cut(s) 450
Hpy188I TCNGA 1 cut(s) 132
Hpy8I GTNNAC 1 cut(s) 450
HpyAV CCTTC 1 cut(s) 159
HpyCH4IV ACGT 2 cut(s) 98, 367
HpyCH4V TGCA 2 cut(s) 253, 300
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 115, 118, 121
HpyF3I CTNAG 4 cut(s) 179, 291, 312, 511
HpySE526I ACGT 2 cut(s) 98, 367
Hsp92II CATG 1 cut(s) 13
KspI CCGCGG 1 cut(s) 458
Kzo9I GATC 1 cut(s) 575
LmnI GCTCC 1 cut(s) 206
Lsp1109I GCAGC 5 cut(s) 121, 124, 127, 130, 133
MaeII ACGT 2 cut(s) 98, 367
MaeIII GTNAC 2 cut(s) 47, 319
MalI GATC 1 cut(s) 577
MboI GATC 1 cut(s) 575
MboII GAAGA 3 cut(s) 205, 481, 631
MluCI AATT 2 cut(s) 191, 295
MlyI GAGTC 1 cut(s) 551
MspA1I CMGCKG 3 cut(s) 225, 311, 457
MspI CCGG 5 cut(s) 266, 383, 440, 548, 586
MspR9I CCNGG 3 cut(s) 349, 549, 586
MvaI CCWGG 1 cut(s) 349
MvnI CGCG 1 cut(s) 457
MwoI GCNNNNNNNGC 4 cut(s) 11, 115, 118, 121
NciI CCSGG 2 cut(s) 549, 586
NcoI CCATGG 1 cut(s) 9
NdeII GATC 1 cut(s) 575
NlaIII CATG 1 cut(s) 13
NlaIV GGNNCC 1 cut(s) 208
NmuCI GTSAC 1 cut(s) 319
PfeI GAWTC 2 cut(s) 55, 624
PflFI GACNNNGTC 2 cut(s) 155, 329
PkrI GCNGC 5 cut(s) 111, 114, 117, 120, 123
PleI GAGTC 1 cut(s) 551
PpsI GAGTC 1 cut(s) 551
Psp6I CCWGG 1 cut(s) 347
PspGI CCWGG 1 cut(s) 347
PspN4I GGNNCC 1 cut(s) 208
PsyI GACNNNGTC 2 cut(s) 155, 329
RsaI GTAC 2 cut(s) 497, 572
RsaNI GTAC 2 cut(s) 496, 571
SacII CCGCGG 1 cut(s) 458
SatI GCNGC 5 cut(s) 110, 113, 116, 119, 122
Sau3AI GATC 1 cut(s) 575
SchI GAGTC 1 cut(s) 551
ScrFI CCNGG 3 cut(s) 349, 549, 586
SetI ASST 5 cut(s) 101, 289, 370, 661, 680
Sfr303I CCGCGG 1 cut(s) 458
SgrBI CCGCGG 1 cut(s) 458
Sse9I AATT 2 cut(s) 191, 295
SsiI CCGC 4 cut(s) 225, 309, 455, 457
StyD4I CCNGG 3 cut(s) 347, 547, 584
StyI CCWWGG 2 cut(s) 9, 669
TaiI ACGT 2 cut(s) 101, 370
TaqI TCGA 3 cut(s) 163, 560, 600
TaqII GACCGA 1 cut(s) 149
TasI AATT 2 cut(s) 191, 295
TatI WGTACW 1 cut(s) 570
TfiI GAWTC 2 cut(s) 55, 624
TscAI CASTG 2 cut(s) 204, 328
TseFI GTSAC 1 cut(s) 319
TseI GCWGC 5 cut(s) 109, 112, 115, 118, 121
Tsp45I GTSAC 1 cut(s) 319
TspRI CASTG 2 cut(s) 204, 328
Tth111I GACNNNGTC 2 cut(s) 155, 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.