RLG00000028470

Protein of unknown function (DUF1499)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0010909
Physical Location & Seq
Reverse (-)
23216074 .. 23217611
1538 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028470

Sequence Viewer

Length: 681 bp
ATGGCTTCCATGGCATACCCAACCCCCTCCTCCTCCTACTCCTGTTGTTACAAGAATCACACCAAACGCAACATCATTCCCTCCATTCCACATATTACGTTCTGTCAGCAGCAGCAGCAGCCTCATCAGAACGACCACAAACCCACCGACCCAGTCGGTCGAAGGGAGATTATACTGAGGAGCAGCGAATTGGCAGTGGTGGGAGCCATCTTCAACTTCAGCGGTAAAAAGCCAGACTATCTTGGGGTGCAGAAAAACCAACCGGCTTTGGCTCTTTGTCCAGCTACTAAGAATTGCGTTTCAACCGCTGAGAATGTCACTGACATTGTCCATTATGCCCCTCCCTGGAACTATAATGGGGGACGTAATAGGAAAAAGCCAGTCAGCAGAGAAGTGGCTATGGAGGAACTTCTCCAAGTGATAAAATCAACAAAGCCGGACAAGTACACACCGCGGATAATGGAGAAGAAAGATGATTATGTGAGAGTGGAATACCAGTCCTCAATTCTAGGGTTTGTGGATGATGTTGAGTTTTGGTTTCCACCGGGCAGAGACTCGATAGTGGAGTACAGATCAGCATCCCGGTTAGGCAACTTTGATTTTGACATCAACAGGAAGAGAATCAAGGCATTGCGACAAGAGTTAGAGAACAAAGGTTGGGCTTCCAAGGACAGCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1499

Protein Analysis

227

Amino Acids

25.87

Weight (kDa)

9.21

Isoelectric Point (pI)

54.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1499 PF07386 90 - 215 3.2e-34 Protein of unknown function (DUF1499)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010909)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G60810 AT3G60810
fragaria_vesca FvH4_7g11910 FvH4_7g11910 FvH4_7g11910
malus_domestica MD02G1204100.v1.1
prunus_persica Prupe.2G145700_v2.0.a1 Prupe.2G145700_v2.0.a1
pyrus_communis pycom02g16640
rosa_chinensis RchiOBHm_Chr1g0350591
rosa_laevigata RLG00000028470
rosa_multiflora Rmu_sc0009041.1_g000002 Rmu_sc0014368.1_g000005
rosa_roxburghii Rroxscaffold_4G00304690
rosa_rugosa Rorug01G0212400
rosa_samantha Rh1AG226900 Rh1BG195600 Rh1CG211700 Rh1DG223700
rosa_wichuraiana Rw1G019610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 454
AciI CCGC 4 cut(s) 222, 306, 452, 454
AcuI CTGAAG 1 cut(s) 202
AfaI GTAC 2 cut(s) 446, 569
AfiI CCNNNNNNNGG 1 cut(s) 345
AgsI TTSAA 2 cut(s) 214, 303
AjnI CCWGG 1 cut(s) 344
AluBI AGCT 2 cut(s) 284, 675
AluI AGCT 2 cut(s) 284, 675
Alw26I GTCTC 1 cut(s) 546
ApeKI GCWGC 5 cut(s) 109, 112, 115, 118, 183
AsuC2I CCSGG 2 cut(s) 546, 583
BbvI GCAGC 5 cut(s) 121, 124, 127, 130, 195
BccI CCATC 1 cut(s) 215
BciT130I CCWGG 1 cut(s) 346
BcnI CCSGG 2 cut(s) 546, 583
BcoDI GTCTC 1 cut(s) 546
BfaI CTAG 1 cut(s) 509
BisI GCNGC 5 cut(s) 110, 113, 116, 119, 184
BlsI GCNGC 5 cut(s) 111, 114, 117, 120, 185
Bme1390I CCNGG 3 cut(s) 346, 546, 583
BmiI GGNNCC 1 cut(s) 205
BmrFI CCNGG 3 cut(s) 346, 546, 583
BmrI ACTGGG 1 cut(s) 146
BmsI GCATC 1 cut(s) 587
BmuI ACTGGG 1 cut(s) 146
BpuMI CCSGG 2 cut(s) 546, 583
BsaBI GATNNNNATC 1 cut(s) 577
BsaJI CCNNGG 4 cut(s) 9, 344, 452, 666
Bsc4I CCNNNNNNNGG 1 cut(s) 345
Bse118I RCCGGY 1 cut(s) 262
Bse1I ACTGG 3 cut(s) 152, 380, 496
Bse3DI GCAATG 1 cut(s) 629
Bse8I GATNNNNATC 1 cut(s) 577
BseBI CCWGG 1 cut(s) 346
BseDI CCNNGG 4 cut(s) 9, 344, 452, 666
BseGI GGATG 2 cut(s) 526, 578
BseJI GATNNNNATC 1 cut(s) 577
BseLI CCNNNNNNNGG 1 cut(s) 345
BseMI GCAATG 1 cut(s) 629
BseMII CTCAG 2 cut(s) 167, 300
BseNI ACTGG 3 cut(s) 152, 380, 496
BseRI GAGGAG 3 cut(s) 19, 22, 193
BseXI GCAGC 5 cut(s) 121, 124, 127, 130, 195
BsgI GTGCAG 1 cut(s) 269
Bsh1236I CGCG 1 cut(s) 454
Bsh1285I CGRYCG 1 cut(s) 160
BsiEI CGRYCG 1 cut(s) 160
BsiSI CCGG 4 cut(s) 263, 437, 545, 583
BslFI GGGAC 1 cut(s) 375
BslI CCNNNNNNNGG 1 cut(s) 345
BsmAI GTCTC 1 cut(s) 546
BsmFI GGGAC 1 cut(s) 375
Bsp143I GATC 1 cut(s) 572
Bsp19I CCATGG 1 cut(s) 9
BspACI CCGC 4 cut(s) 222, 306, 452, 454
BspCNI CTCAG 2 cut(s) 168, 301
BspFNI CGCG 1 cut(s) 454
BspLI GGNNCC 1 cut(s) 205
BsrDI GCAATG 1 cut(s) 629
BsrFI RCCGGY 1 cut(s) 262
BsrI ACTGG 3 cut(s) 152, 380, 496
BssAI RCCGGY 1 cut(s) 262
BssECI CCNNGG 4 cut(s) 9, 344, 452, 666
BssMI GATC 1 cut(s) 572
BssT1I CCWWGG 2 cut(s) 9, 666
Bst2UI CCWGG 1 cut(s) 346
Bst6I CTCTTC 1 cut(s) 611
BstDEI CTNAG 3 cut(s) 176, 288, 309
BstDSI CCRYGG 2 cut(s) 9, 452
BstF5I GGATG 2 cut(s) 526, 578
BstFNI CGCG 1 cut(s) 454
BstKTI GATC 1 cut(s) 575
BstMAI GTCTC 1 cut(s) 546
BstMBI GATC 1 cut(s) 572
BstMCI CGRYCG 1 cut(s) 160
BstMWI GCNNNNNNNGC 3 cut(s) 11, 115, 118
BstNI CCWGG 1 cut(s) 346
BstSCI CCNGG 3 cut(s) 344, 544, 581
BstUI CGCG 1 cut(s) 454
BstV1I GCAGC 5 cut(s) 121, 124, 127, 130, 195
BtgI CCRYGG 2 cut(s) 9, 452
BtsCI GGATG 2 cut(s) 526, 578
BtsI GCAGTG 1 cut(s) 201
BtsIMutI CAGTG 2 cut(s) 201, 318
Cfr10I RCCGGY 1 cut(s) 262
Cfr42I CCGCGG 1 cut(s) 455
Csp6I GTAC 2 cut(s) 445, 568
CviAII CATG 1 cut(s) 10
CviQI GTAC 2 cut(s) 445, 568
DdeI CTNAG 3 cut(s) 176, 288, 309
DpnI GATC 1 cut(s) 574
DpnII GATC 1 cut(s) 572
Eam1104I CTCTTC 1 cut(s) 611
EarI CTCTTC 1 cut(s) 611
Eco130I CCWWGG 2 cut(s) 9, 666
Eco57I CTGAAG 1 cut(s) 202
EcoRII CCWGG 1 cut(s) 344
EcoT14I CCWWGG 2 cut(s) 9, 666
ErhI CCWWGG 2 cut(s) 9, 666
FaeI CATG 1 cut(s) 13
FaiI YATR 8 cut(s) 11, 16, 93, 173, 336, 354, 401, 480
FalI AAGNNNNNCTT 1 cut(s) 659
FaqI GGGAC 1 cut(s) 375
FatI CATG 1 cut(s) 9
Fnu4HI GCNGC 5 cut(s) 110, 113, 116, 119, 184
FokI GGATG 2 cut(s) 533, 565
Fsp4HI GCNGC 5 cut(s) 110, 113, 116, 119, 184
FspBI CTAG 1 cut(s) 509
GluI GCNGC 5 cut(s) 110, 113, 116, 119, 184
HapII CCGG 4 cut(s) 263, 437, 545, 583
Hin1II CATG 1 cut(s) 13
HinfI GANTC 3 cut(s) 55, 554, 621
HpaII CCGG 4 cut(s) 263, 437, 545, 583
Hpy166II GTNNAC 1 cut(s) 447
Hpy188I TCNGA 1 cut(s) 129
Hpy8I GTNNAC 1 cut(s) 447
HpyAV CCTTC 1 cut(s) 156
HpyCH4IV ACGT 2 cut(s) 98, 364
HpyCH4V TGCA 1 cut(s) 250
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 115, 118
HpyF3I CTNAG 3 cut(s) 176, 288, 309
HpySE526I ACGT 2 cut(s) 98, 364
Hsp92II CATG 1 cut(s) 13
KspI CCGCGG 1 cut(s) 455
Kzo9I GATC 1 cut(s) 572
LmnI GCTCC 2 cut(s) 180, 203
Lsp1109I GCAGC 5 cut(s) 121, 124, 127, 130, 195
LweI GCATC 1 cut(s) 587
MaeI CTAG 1 cut(s) 509
MaeII ACGT 2 cut(s) 98, 364
MaeIII GTNAC 2 cut(s) 47, 316
MalI GATC 1 cut(s) 574
MboI GATC 1 cut(s) 572
MboII GAAGA 3 cut(s) 202, 478, 628
MluCI AATT 3 cut(s) 188, 292, 504
MlyI GAGTC 1 cut(s) 548
MnlI CCTC 9 cut(s) 37, 40, 43, 91, 132, 171, 351, 397, 511
MspA1I CMGCKG 3 cut(s) 222, 308, 454
MspI CCGG 4 cut(s) 263, 437, 545, 583
MspR9I CCNGG 3 cut(s) 346, 546, 583
MvaI CCWGG 1 cut(s) 346
MvnI CGCG 1 cut(s) 454
MwoI GCNNNNNNNGC 3 cut(s) 11, 115, 118
NciI CCSGG 2 cut(s) 546, 583
NcoI CCATGG 1 cut(s) 9
NdeII GATC 1 cut(s) 572
NlaIII CATG 1 cut(s) 13
NlaIV GGNNCC 1 cut(s) 205
NmuCI GTSAC 1 cut(s) 316
PfeI GAWTC 2 cut(s) 55, 621
PflFI GACNNNGTC 2 cut(s) 152, 326
PkrI GCNGC 5 cut(s) 111, 114, 117, 120, 185
PleI GAGTC 1 cut(s) 548
PpsI GAGTC 1 cut(s) 548
Psp6I CCWGG 1 cut(s) 344
PspGI CCWGG 1 cut(s) 344
PspN4I GGNNCC 1 cut(s) 205
PsyI GACNNNGTC 2 cut(s) 152, 326
RsaI GTAC 2 cut(s) 446, 569
RsaNI GTAC 2 cut(s) 445, 568
SacII CCGCGG 1 cut(s) 455
SatI GCNGC 5 cut(s) 110, 113, 116, 119, 184
Sau3AI GATC 1 cut(s) 572
SchI GAGTC 1 cut(s) 548
ScrFI CCNGG 3 cut(s) 346, 546, 583
SetI ASST 5 cut(s) 101, 286, 367, 658, 677
SfaNI GCATC 1 cut(s) 587
Sfr303I CCGCGG 1 cut(s) 455
SgrBI CCGCGG 1 cut(s) 455
Sse9I AATT 3 cut(s) 188, 292, 504
SsiI CCGC 4 cut(s) 222, 306, 452, 454
SspMI CTAG 1 cut(s) 509
StyD4I CCNGG 3 cut(s) 344, 544, 581
StyI CCWWGG 2 cut(s) 9, 666
TaiI ACGT 2 cut(s) 101, 367
TaqI TCGA 2 cut(s) 160, 557
TaqII GACCGA 1 cut(s) 146
TasI AATT 3 cut(s) 188, 292, 504
TatI WGTACW 2 cut(s) 444, 567
TfiI GAWTC 2 cut(s) 55, 621
TscAI CASTG 2 cut(s) 201, 325
TseFI GTSAC 1 cut(s) 316
TseI GCWGC 5 cut(s) 109, 112, 115, 118, 183
Tsp45I GTSAC 1 cut(s) 316
TspRI CASTG 2 cut(s) 201, 325
Tth111I GACNNNGTC 2 cut(s) 152, 326
XspI CTAG 1 cut(s) 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.