Rh1CG211700

Protein of unknown function (DUF1499)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0010909
Physical Location & Seq
Forward (+)
45660097 .. 45662530
2434 bp
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UTR
Exon/CDS
Intron
Rh1CG211700.1

Sequence Viewer

Length: 480 bp
ATGTTGATTGATGCGTGCAGCGGTAAAAAGCCAGACTATCTTGGGGTGCAGAAAAACCAACCGGCTTTGGCTCTTTGTCCAGCTACTAAGAATTGCATTTCAACCGCTGAGAATGTCACTGACATTGTCCATTATGCCCCTCCCTGGAACTATAATGGGGGACGTAATAGGAAAAAGCCGGTCAGCAGAGAAGTGGCTATGGAGGAACTTCTCCAAGTGATAAAATCAACAAAGCCGGACAAGTTCACACCACGGATAATGGAGAAGAAAGATGATTATGTGAGAGTGGAATACCAGTCCTCAATCCTAGGGTTTGTGGATGATGTTGAGTTTTGGTTTCCACCGGGCAGAGACTCGATAGTGGAGTACAGATCAGCATCCCGGTTAGGCAACTTTGATTTTGACATCAACAGGAAGAGAATCAAGGCATTGCGACAAGAGTTAGAGAACAAAGGTTGGGCTTCCAAGGACAGCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1499

Protein Analysis

159

Amino Acids

18.25

Weight (kDa)

8.93

Isoelectric Point (pI)

42.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1499 PF07386 23 - 148 3.4e-34 Protein of unknown function (DUF1499)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010909)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G60810 AT3G60810
fragaria_vesca FvH4_7g11910 FvH4_7g11910 FvH4_7g11910
malus_domestica MD02G1204100.v1.1
prunus_persica Prupe.2G145700_v2.0.a1 Prupe.2G145700_v2.0.a1
pyrus_communis pycom02g16640
rosa_chinensis RchiOBHm_Chr1g0350591
rosa_laevigata RLG00000028470
rosa_multiflora Rmu_sc0009041.1_g000002 Rmu_sc0014368.1_g000005
rosa_roxburghii Rroxscaffold_4G00304690
rosa_rugosa Rorug01G0212400
rosa_samantha Rh1AG226900 Rh1BG195600 Rh1CG211700 Rh1DG223700
rosa_wichuraiana Rw1G019610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 21, 105
AfaI GTAC 1 cut(s) 368
AfiI CCNNNNNNNGG 1 cut(s) 144
AgsI TTSAA 1 cut(s) 102
AjnI CCWGG 1 cut(s) 143
AluBI AGCT 2 cut(s) 83, 474
AluI AGCT 2 cut(s) 83, 474
Alw26I GTCTC 1 cut(s) 345
ApeKI GCWGC 1 cut(s) 18
AspA2I CCTAGG 1 cut(s) 307
AsuC2I CCSGG 2 cut(s) 345, 382
AvrII CCTAGG 1 cut(s) 307
BbvI GCAGC 1 cut(s) 30
BciT130I CCWGG 1 cut(s) 145
BcnI CCSGG 2 cut(s) 345, 382
BcoDI GTCTC 1 cut(s) 345
BfaI CTAG 1 cut(s) 308
BisI GCNGC 1 cut(s) 19
BlnI CCTAGG 1 cut(s) 307
BlsI GCNGC 1 cut(s) 20
Bme1390I CCNGG 3 cut(s) 145, 345, 382
BmrFI CCNGG 3 cut(s) 145, 345, 382
BmsI GCATC 1 cut(s) 386
BpuMI CCSGG 2 cut(s) 345, 382
BsaBI GATNNNNATC 1 cut(s) 376
BsaJI CCNNGG 4 cut(s) 143, 251, 307, 465
Bsc4I CCNNNNNNNGG 1 cut(s) 144
Bse118I RCCGGY 2 cut(s) 61, 178
Bse1I ACTGG 1 cut(s) 295
Bse3DI GCAATG 1 cut(s) 428
Bse8I GATNNNNATC 1 cut(s) 376
BseBI CCWGG 1 cut(s) 145
BseDI CCNNGG 4 cut(s) 143, 251, 307, 465
BseGI GGATG 2 cut(s) 325, 377
BseJI GATNNNNATC 1 cut(s) 376
BseLI CCNNNNNNNGG 1 cut(s) 144
BseMI GCAATG 1 cut(s) 428
BseMII CTCAG 1 cut(s) 99
BseNI ACTGG 1 cut(s) 295
BseXI GCAGC 1 cut(s) 30
BsgI GTGCAG 2 cut(s) 37, 68
BsiSI CCGG 5 cut(s) 62, 179, 236, 344, 382
BslFI GGGAC 1 cut(s) 174
BslI CCNNNNNNNGG 1 cut(s) 144
BsmAI GTCTC 1 cut(s) 345
BsmFI GGGAC 1 cut(s) 174
Bsp143I GATC 1 cut(s) 371
BspACI CCGC 2 cut(s) 21, 105
BspCNI CTCAG 1 cut(s) 100
BsrDI GCAATG 1 cut(s) 428
BsrFI RCCGGY 2 cut(s) 61, 178
BsrI ACTGG 1 cut(s) 295
BssAI RCCGGY 2 cut(s) 61, 178
BssECI CCNNGG 4 cut(s) 143, 251, 307, 465
BssMI GATC 1 cut(s) 371
BssT1I CCWWGG 2 cut(s) 307, 465
Bst2UI CCWGG 1 cut(s) 145
Bst6I CTCTTC 1 cut(s) 410
BstC8I GCNNGC 1 cut(s) 16
BstDEI CTNAG 2 cut(s) 87, 108
BstDSI CCRYGG 1 cut(s) 251
BstF5I GGATG 2 cut(s) 325, 377
BstKTI GATC 1 cut(s) 374
BstMAI GTCTC 1 cut(s) 345
BstMBI GATC 1 cut(s) 371
BstNI CCWGG 1 cut(s) 145
BstSCI CCNGG 3 cut(s) 143, 343, 380
BstV1I GCAGC 1 cut(s) 30
BtgI CCRYGG 1 cut(s) 251
BtsCI GGATG 2 cut(s) 325, 377
BtsIMutI CAGTG 1 cut(s) 117
Cac8I GCNNGC 1 cut(s) 16
Cfr10I RCCGGY 2 cut(s) 61, 178
Csp6I GTAC 1 cut(s) 367
CviJI RGCY 9 cut(s) 31, 65, 71, 83, 178, 197, 235, 461, 474
CviKI_1 RGCY 9 cut(s) 31, 65, 71, 83, 178, 197, 235, 461, 474
CviQI GTAC 1 cut(s) 367
DdeI CTNAG 2 cut(s) 87, 108
DpnI GATC 1 cut(s) 373
DpnII GATC 1 cut(s) 371
Eam1104I CTCTTC 1 cut(s) 410
EarI CTCTTC 1 cut(s) 410
Eco130I CCWWGG 2 cut(s) 307, 465
EcoRII CCWGG 1 cut(s) 143
EcoT14I CCWWGG 2 cut(s) 307, 465
ErhI CCWWGG 2 cut(s) 307, 465
FaiI YATR 4 cut(s) 135, 153, 200, 279
FalI AAGNNNNNCTT 1 cut(s) 458
FaqI GGGAC 1 cut(s) 174
Fnu4HI GCNGC 1 cut(s) 19
FokI GGATG 2 cut(s) 332, 364
Fsp4HI GCNGC 1 cut(s) 19
FspBI CTAG 1 cut(s) 308
GluI GCNGC 1 cut(s) 19
HapII CCGG 5 cut(s) 62, 179, 236, 344, 382
HinfI GANTC 2 cut(s) 353, 420
HpaII CCGG 5 cut(s) 62, 179, 236, 344, 382
Hpy166II GTNNAC 1 cut(s) 246
Hpy8I GTNNAC 1 cut(s) 246
HpyCH4IV ACGT 1 cut(s) 163
HpyCH4V TGCA 3 cut(s) 18, 49, 96
HpyF3I CTNAG 2 cut(s) 87, 108
HpySE526I ACGT 1 cut(s) 163
Kzo9I GATC 1 cut(s) 371
Lsp1109I GCAGC 1 cut(s) 30
LweI GCATC 1 cut(s) 386
MaeI CTAG 1 cut(s) 308
MaeII ACGT 1 cut(s) 163
MaeIII GTNAC 1 cut(s) 115
MalI GATC 1 cut(s) 373
MboI GATC 1 cut(s) 371
MboII GAAGA 2 cut(s) 277, 427
MluCI AATT 1 cut(s) 91
MlyI GAGTC 1 cut(s) 347
MnlI CCTC 3 cut(s) 150, 196, 310
MspA1I CMGCKG 2 cut(s) 21, 107
MspI CCGG 5 cut(s) 62, 179, 236, 344, 382
MspR9I CCNGG 3 cut(s) 145, 345, 382
MvaI CCWGG 1 cut(s) 145
NciI CCSGG 2 cut(s) 345, 382
NdeII GATC 1 cut(s) 371
NmuCI GTSAC 1 cut(s) 115
PfeI GAWTC 1 cut(s) 420
PflFI GACNNNGTC 1 cut(s) 125
PkrI GCNGC 1 cut(s) 20
PleI GAGTC 1 cut(s) 347
PpsI GAGTC 1 cut(s) 347
Psp6I CCWGG 1 cut(s) 143
PspGI CCWGG 1 cut(s) 143
PsyI GACNNNGTC 1 cut(s) 125
RsaI GTAC 1 cut(s) 368
RsaNI GTAC 1 cut(s) 367
SatI GCNGC 1 cut(s) 19
Sau3AI GATC 1 cut(s) 371
SchI GAGTC 1 cut(s) 347
ScrFI CCNGG 3 cut(s) 145, 345, 382
SetI ASST 4 cut(s) 85, 166, 457, 476
SfaNI GCATC 1 cut(s) 386
Sse9I AATT 1 cut(s) 91
SsiI CCGC 2 cut(s) 21, 105
SspMI CTAG 1 cut(s) 308
StyD4I CCNGG 3 cut(s) 143, 343, 380
StyI CCWWGG 2 cut(s) 307, 465
TaiI ACGT 1 cut(s) 166
TaqI TCGA 1 cut(s) 356
TasI AATT 1 cut(s) 91
TatI WGTACW 1 cut(s) 366
TfiI GAWTC 1 cut(s) 420
TscAI CASTG 1 cut(s) 124
TseFI GTSAC 1 cut(s) 115
TseI GCWGC 1 cut(s) 18
Tsp45I GTSAC 1 cut(s) 115
TspGWI ACGGA 1 cut(s) 268
TspRI CASTG 1 cut(s) 124
Tth111I GACNNNGTC 1 cut(s) 125
XmaJI CCTAGG 1 cut(s) 307
XspI CTAG 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.