FvH4_7g11910

Protein of unknown function (DUF1499)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0010909
Physical Location & Seq
Forward (+)
10860323 .. 10862287
1965 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g11910.t3

Sequence Viewer

Length: 660 bp
ATGGCTTCCATGGCATACCCAACTCCCTCCTCCTCCTATTGCTACAACAATCACACCAAACGCAACTTCTCCATTTCACATATTACCATTTGTCAGCAGCAGCAATCTCAGAACGACCACAAACCCACCGACCCAGTCGGTCGAAGGGAAATAATACTAAGGAGCAGCGAACTGGCAGTCGTGGGTGCCATCTTCAACTTCAGTGGTAAGAAGCCAGACTATCTTGGGGTGCAGAAAAACCAACAAGCTTTGGCTCTTTGTCCAGCTACCAAGAATTGCATTTCAACCGCTGAGAATGTCACTGACATTGTCCATTATGCCCCTCCCTGGAACTATAATGGGGGGCGCAATAGGAAAAAGCCGGTCAGCAGAGAAGTGGCTATGGAGGAACTTCTCCAAGTGATAAAATCTACAAAGCCGGACAAGTTCACACCGCGGATTATGGAGAAGAAAGATGATTATGTGAGAGTGGAATACCAGTCCTCAATCTTAGGGTTTGTGGATGATGTAGAGTTTTGGTTTCCACCCAGAGACTCGGTAGTGGAATACCGATCAGCATCCCGGTTAGGCAACTTTGATTTTGACATCAACAGGAAGAGAATCAAGGCATTGCGACAAGAGTTAGAGAACAAAGGTTGGGCTTCCAAGGACAGCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1499

Protein Analysis

220

Amino Acids

25.13

Weight (kDa)

9.2

Isoelectric Point (pI)

51.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1499 PF07386 84 - 166 3.5e-11 Protein of unknown function (DUF1499)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010909)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G60810 AT3G60810
fragaria_vesca FvH4_7g11910 FvH4_7g11910 FvH4_7g11910
malus_domestica MD02G1204100.v1.1
prunus_persica Prupe.2G145700_v2.0.a1 Prupe.2G145700_v2.0.a1
pyrus_communis pycom02g16640
rosa_chinensis RchiOBHm_Chr1g0350591
rosa_laevigata RLG00000028470
rosa_multiflora Rmu_sc0009041.1_g000002 Rmu_sc0014368.1_g000005
rosa_roxburghii Rroxscaffold_4G00304690
rosa_rugosa Rorug01G0212400
rosa_samantha Rh1AG226900 Rh1BG195600 Rh1CG211700 Rh1DG223700
rosa_wichuraiana Rw1G019610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 185
AccII CGCG 1 cut(s) 436
AciI CCGC 3 cut(s) 288, 434, 436
AcuI CTGAAG 1 cut(s) 184
AfiI CCNNNNNNNGG 1 cut(s) 327
AgsI TTSAA 2 cut(s) 196, 285
AjnI CCWGG 1 cut(s) 326
AjuI GAANNNNNNNTTGG 2 cut(s) 50, 82
AluBI AGCT 3 cut(s) 248, 266, 654
AluI AGCT 3 cut(s) 248, 266, 654
Alw26I GTCTC 1 cut(s) 525
ApeKI GCWGC 3 cut(s) 97, 100, 165
ArsI GACNNNNNNTTYG 2 cut(s) 162, 194
AspLEI GCGC 1 cut(s) 348
AsuC2I CCSGG 1 cut(s) 562
BanI GGYRCC 1 cut(s) 185
BbvI GCAGC 3 cut(s) 109, 112, 177
BccI CCATC 1 cut(s) 197
BciT130I CCWGG 1 cut(s) 328
BcnI CCSGG 1 cut(s) 562
BcoDI GTCTC 1 cut(s) 525
BisI GCNGC 3 cut(s) 98, 101, 166
BlsI GCNGC 3 cut(s) 99, 102, 167
Bme1390I CCNGG 2 cut(s) 328, 562
BmiI GGNNCC 1 cut(s) 187
BmrFI CCNGG 2 cut(s) 328, 562
BmrI ACTGGG 1 cut(s) 128
BmsI GCATC 1 cut(s) 566
BmuI ACTGGG 1 cut(s) 128
BpuMI CCSGG 1 cut(s) 562
BsaBI GATNNNNATC 1 cut(s) 556
BsaJI CCNNGG 4 cut(s) 9, 326, 434, 645
Bsc4I CCNNNNNNNGG 1 cut(s) 327
Bse118I RCCGGY 1 cut(s) 361
Bse1I ACTGG 3 cut(s) 134, 177, 478
Bse3DI GCAATG 1 cut(s) 608
Bse8I GATNNNNATC 1 cut(s) 556
BseBI CCWGG 1 cut(s) 328
BseDI CCNNGG 4 cut(s) 9, 326, 434, 645
BseGI GGATG 2 cut(s) 508, 557
BseJI GATNNNNATC 1 cut(s) 556
BseLI CCNNNNNNNGG 1 cut(s) 327
BseMI GCAATG 1 cut(s) 608
BseMII CTCAG 2 cut(s) 122, 282
BseNI ACTGG 3 cut(s) 134, 177, 478
BseRI GAGGAG 2 cut(s) 19, 22
BseXI GCAGC 3 cut(s) 109, 112, 177
BsgI GTGCAG 1 cut(s) 251
Bsh1236I CGCG 1 cut(s) 436
Bsh1285I CGRYCG 1 cut(s) 142
BshNI GGYRCC 1 cut(s) 185
BsiEI CGRYCG 1 cut(s) 142
BsiSI CCGG 3 cut(s) 362, 419, 562
BslI CCNNNNNNNGG 1 cut(s) 327
BsmAI GTCTC 1 cut(s) 525
Bsp143I GATC 1 cut(s) 551
Bsp19I CCATGG 1 cut(s) 9
BspACI CCGC 3 cut(s) 288, 434, 436
BspCNI CTCAG 2 cut(s) 121, 283
BspFNI CGCG 1 cut(s) 436
BspLI GGNNCC 1 cut(s) 187
BspT107I GGYRCC 1 cut(s) 185
BsrDI GCAATG 1 cut(s) 608
BsrFI RCCGGY 1 cut(s) 361
BsrI ACTGG 3 cut(s) 134, 177, 478
BssAI RCCGGY 1 cut(s) 361
BssECI CCNNGG 4 cut(s) 9, 326, 434, 645
BssMI GATC 1 cut(s) 551
BssT1I CCWWGG 2 cut(s) 9, 645
Bst2UI CCWGG 1 cut(s) 328
Bst6I CTCTTC 1 cut(s) 590
BstDEI CTNAG 4 cut(s) 108, 158, 291, 490
BstDSI CCRYGG 2 cut(s) 9, 434
BstF5I GGATG 2 cut(s) 508, 557
BstFNI CGCG 1 cut(s) 436
BstHHI GCGC 1 cut(s) 348
BstKTI GATC 1 cut(s) 554
BstMAI GTCTC 1 cut(s) 525
BstMBI GATC 1 cut(s) 551
BstMCI CGRYCG 1 cut(s) 142
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 1 cut(s) 328
BstSCI CCNGG 2 cut(s) 326, 560
BstUI CGCG 1 cut(s) 436
BstV1I GCAGC 3 cut(s) 109, 112, 177
BtgI CCRYGG 2 cut(s) 9, 434
BtsCI GGATG 2 cut(s) 508, 557
BtsIMutI CAGTG 2 cut(s) 208, 300
CfoI GCGC 1 cut(s) 348
Cfr10I RCCGGY 1 cut(s) 361
Cfr42I CCGCGG 1 cut(s) 437
CspCI CAANNNNNGTGG 2 cut(s) 184, 219
CviAII CATG 1 cut(s) 10
DdeI CTNAG 4 cut(s) 108, 158, 291, 490
DpnI GATC 1 cut(s) 553
DpnII GATC 1 cut(s) 551
Eam1104I CTCTTC 1 cut(s) 590
EarI CTCTTC 1 cut(s) 590
Eco130I CCWWGG 2 cut(s) 9, 645
Eco57I CTGAAG 1 cut(s) 184
EcoRII CCWGG 1 cut(s) 326
EcoT14I CCWWGG 2 cut(s) 9, 645
ErhI CCWWGG 2 cut(s) 9, 645
FaeI CATG 1 cut(s) 13
FaiI YATR 8 cut(s) 11, 16, 81, 318, 336, 383, 443, 462
FalI AAGNNNNNCTT 1 cut(s) 638
FatI CATG 1 cut(s) 9
Fnu4HI GCNGC 3 cut(s) 98, 101, 166
FokI GGATG 2 cut(s) 515, 544
Fsp4HI GCNGC 3 cut(s) 98, 101, 166
GlaI GCGC 1 cut(s) 347
GluI GCNGC 3 cut(s) 98, 101, 166
HapII CCGG 3 cut(s) 362, 419, 562
HhaI GCGC 1 cut(s) 348
Hin1II CATG 1 cut(s) 13
Hin6I GCGC 1 cut(s) 346
HinP1I GCGC 1 cut(s) 346
HindIII AAGCTT 1 cut(s) 246
HinfI GANTC 2 cut(s) 533, 600
HpaII CCGG 3 cut(s) 362, 419, 562
Hpy166II GTNNAC 1 cut(s) 429
Hpy188I TCNGA 1 cut(s) 111
Hpy8I GTNNAC 1 cut(s) 429
HpyAV CCTTC 1 cut(s) 138
HpyCH4V TGCA 2 cut(s) 232, 279
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 4 cut(s) 108, 158, 291, 490
Hsp92II CATG 1 cut(s) 13
HspAI GCGC 1 cut(s) 346
KspI CCGCGG 1 cut(s) 437
Kzo9I GATC 1 cut(s) 551
LmnI GCTCC 1 cut(s) 162
Lsp1109I GCAGC 3 cut(s) 109, 112, 177
LweI GCATC 1 cut(s) 566
MaeIII GTNAC 1 cut(s) 298
MalI GATC 1 cut(s) 553
MboI GATC 1 cut(s) 551
MboII GAAGA 3 cut(s) 184, 460, 607
MluCI AATT 1 cut(s) 274
MlyI GAGTC 1 cut(s) 527
MnlI CCTC 6 cut(s) 37, 40, 43, 333, 379, 493
MseI TTAA 1 cut(s) 658
MspA1I CMGCKG 2 cut(s) 290, 436
MspI CCGG 3 cut(s) 362, 419, 562
MspR9I CCNGG 2 cut(s) 328, 562
MvaI CCWGG 1 cut(s) 328
MvnI CGCG 1 cut(s) 436
MwoI GCNNNNNNNGC 1 cut(s) 11
NciI CCSGG 1 cut(s) 562
NcoI CCATGG 1 cut(s) 9
NdeII GATC 1 cut(s) 551
NlaIII CATG 1 cut(s) 13
NlaIV GGNNCC 1 cut(s) 187
NmuCI GTSAC 1 cut(s) 298
PfeI GAWTC 1 cut(s) 600
PflFI GACNNNGTC 2 cut(s) 134, 308
PkrI GCNGC 3 cut(s) 99, 102, 167
PleI GAGTC 1 cut(s) 527
PpsI GAGTC 1 cut(s) 527
Psp6I CCWGG 1 cut(s) 326
PspGI CCWGG 1 cut(s) 326
PspN4I GGNNCC 1 cut(s) 187
PsyI GACNNNGTC 2 cut(s) 134, 308
SacII CCGCGG 1 cut(s) 437
SaqAI TTAA 1 cut(s) 658
SatI GCNGC 3 cut(s) 98, 101, 166
Sau3AI GATC 1 cut(s) 551
SchI GAGTC 1 cut(s) 527
ScrFI CCNGG 2 cut(s) 328, 562
SetI ASST 4 cut(s) 250, 268, 637, 656
SfaNI GCATC 1 cut(s) 566
Sfr303I CCGCGG 1 cut(s) 437
SgrBI CCGCGG 1 cut(s) 437
Sse9I AATT 1 cut(s) 274
SsiI CCGC 3 cut(s) 288, 434, 436
StyD4I CCNGG 2 cut(s) 326, 560
StyI CCWWGG 2 cut(s) 9, 645
TaqI TCGA 1 cut(s) 142
TaqII GACCGA 1 cut(s) 128
TasI AATT 1 cut(s) 274
TfiI GAWTC 1 cut(s) 600
Tru1I TTAA 1 cut(s) 658
Tru9I TTAA 1 cut(s) 658
TscAI CASTG 2 cut(s) 208, 307
TseFI GTSAC 1 cut(s) 298
TseI GCWGC 3 cut(s) 97, 100, 165
Tsp45I GTSAC 1 cut(s) 298
TspRI CASTG 2 cut(s) 208, 307
Tth111I GACNNNGTC 2 cut(s) 134, 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.