Rh1AG226900

Protein of unknown function (DUF1499)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0010909
Physical Location & Seq
Forward (+)
43175912 .. 43177454
1543 bp
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UTR
Exon/CDS
Intron
Rh1AG226900.1

Sequence Viewer

Length: 678 bp
ATGGCTTCCATGGCATACCCAACCCCCTCCTCCTCCTACTCCTGTTGTTACAAGAATCACACCAGACGCAACATCATTCCCTCCATTCCACATATTACGTTCTGTCAGCAGCAGCAGCCTCATCAGAGCGACCACAAACCCACCGACCCAGTCGGTCGAAGGGAGATTATACTGAGGAGCAGCGAATTGGCAGTGGTGGGAGCCATCTTCAACTTCAGCGGTAAAAAGCCAGACTATCTTGGGGTGCAGAAAAACCAACCGGCTTTGGCTCTTTGTCCAGCTACTAAGAATTGCATTTCAACCGCTGAGAATGTCACTGACATTGTCCATTATGCCCCTCCCTGGAACTATAATGGGGGACGTAATAGGAAAAAGCCGGTCAGCAGAGAAGTGGCTATGGAGGAACTTCTCCAAGTGATAAAATCAACAAAGCCGGACAAGTTCACACCACGGATAATGGAGAAGAAAGATGATTATGTGAGAGTGGAATACCAGTCCTCAATCCTAGGGTTTGTGGATGATGTTGAGTTTTGGTTTCCACCGGGCAGAGACTCGATAGTGGAGTACAGATCAGCATCCCGGTTAGGCAACTTTGATTTTGACATCAACAGGAAGAGAATCAAGGCATTGCGACAAGAGTTAGAGAACAAAGGTTGGGCTTCCAAGGACAGCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1499

Protein Analysis

225

Amino Acids

25.74

Weight (kDa)

9.24

Isoelectric Point (pI)

57.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1499 PF07386 89 - 214 1e-33 Protein of unknown function (DUF1499)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010909)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G60810 AT3G60810
fragaria_vesca FvH4_7g11910 FvH4_7g11910 FvH4_7g11910
malus_domestica MD02G1204100.v1.1
prunus_persica Prupe.2G145700_v2.0.a1 Prupe.2G145700_v2.0.a1
pyrus_communis pycom02g16640
rosa_chinensis RchiOBHm_Chr1g0350591
rosa_laevigata RLG00000028470
rosa_multiflora Rmu_sc0009041.1_g000002 Rmu_sc0014368.1_g000005
rosa_roxburghii Rroxscaffold_4G00304690
rosa_rugosa Rorug01G0212400
rosa_samantha Rh1AG226900 Rh1BG195600 Rh1CG211700 Rh1DG223700
rosa_wichuraiana Rw1G019610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 219, 303
AcuI CTGAAG 1 cut(s) 199
AfaI GTAC 1 cut(s) 566
AfiI CCNNNNNNNGG 1 cut(s) 342
AgsI TTSAA 2 cut(s) 211, 300
AjnI CCWGG 1 cut(s) 341
AluBI AGCT 2 cut(s) 281, 672
AluI AGCT 2 cut(s) 281, 672
Alw26I GTCTC 1 cut(s) 543
ApeKI GCWGC 4 cut(s) 109, 112, 115, 180
AspA2I CCTAGG 1 cut(s) 505
AsuC2I CCSGG 2 cut(s) 543, 580
AvrII CCTAGG 1 cut(s) 505
BbvI GCAGC 4 cut(s) 121, 124, 127, 192
BccI CCATC 1 cut(s) 212
BciT130I CCWGG 1 cut(s) 343
BcnI CCSGG 2 cut(s) 543, 580
BcoDI GTCTC 1 cut(s) 543
BfaI CTAG 1 cut(s) 506
BisI GCNGC 4 cut(s) 110, 113, 116, 181
BlnI CCTAGG 1 cut(s) 505
BlsI GCNGC 4 cut(s) 111, 114, 117, 182
Bme1390I CCNGG 3 cut(s) 343, 543, 580
BmiI GGNNCC 1 cut(s) 202
BmrFI CCNGG 3 cut(s) 343, 543, 580
BmrI ACTGGG 1 cut(s) 143
BmsI GCATC 1 cut(s) 584
BmuI ACTGGG 1 cut(s) 143
BpuMI CCSGG 2 cut(s) 543, 580
BsaBI GATNNNNATC 1 cut(s) 574
BsaJI CCNNGG 5 cut(s) 9, 341, 449, 505, 663
Bsc4I CCNNNNNNNGG 1 cut(s) 342
Bse118I RCCGGY 2 cut(s) 259, 376
Bse1I ACTGG 2 cut(s) 149, 493
Bse3DI GCAATG 1 cut(s) 626
Bse8I GATNNNNATC 1 cut(s) 574
BseBI CCWGG 1 cut(s) 343
BseDI CCNNGG 5 cut(s) 9, 341, 449, 505, 663
BseGI GGATG 2 cut(s) 523, 575
BseJI GATNNNNATC 1 cut(s) 574
BseLI CCNNNNNNNGG 1 cut(s) 342
BseMI GCAATG 1 cut(s) 626
BseMII CTCAG 2 cut(s) 164, 297
BseNI ACTGG 2 cut(s) 149, 493
BseRI GAGGAG 3 cut(s) 19, 22, 190
BseXI GCAGC 4 cut(s) 121, 124, 127, 192
BsgI GTGCAG 1 cut(s) 266
Bsh1285I CGRYCG 1 cut(s) 157
BsiEI CGRYCG 1 cut(s) 157
BsiSI CCGG 5 cut(s) 260, 377, 434, 542, 580
BslFI GGGAC 1 cut(s) 372
BslI CCNNNNNNNGG 1 cut(s) 342
BsmAI GTCTC 1 cut(s) 543
BsmFI GGGAC 1 cut(s) 372
Bsp143I GATC 1 cut(s) 569
Bsp19I CCATGG 1 cut(s) 9
BspACI CCGC 2 cut(s) 219, 303
BspCNI CTCAG 2 cut(s) 165, 298
BspLI GGNNCC 1 cut(s) 202
BsrDI GCAATG 1 cut(s) 626
BsrFI RCCGGY 2 cut(s) 259, 376
BsrI ACTGG 2 cut(s) 149, 493
BssAI RCCGGY 2 cut(s) 259, 376
BssECI CCNNGG 5 cut(s) 9, 341, 449, 505, 663
BssMI GATC 1 cut(s) 569
BssT1I CCWWGG 3 cut(s) 9, 505, 663
Bst2UI CCWGG 1 cut(s) 343
Bst6I CTCTTC 1 cut(s) 608
BstDEI CTNAG 3 cut(s) 173, 285, 306
BstDSI CCRYGG 2 cut(s) 9, 449
BstF5I GGATG 2 cut(s) 523, 575
BstKTI GATC 1 cut(s) 572
BstMAI GTCTC 1 cut(s) 543
BstMBI GATC 1 cut(s) 569
BstMCI CGRYCG 1 cut(s) 157
BstMWI GCNNNNNNNGC 2 cut(s) 11, 115
BstNI CCWGG 1 cut(s) 343
BstSCI CCNGG 3 cut(s) 341, 541, 578
BstV1I GCAGC 4 cut(s) 121, 124, 127, 192
BtgI CCRYGG 2 cut(s) 9, 449
BtsCI GGATG 2 cut(s) 523, 575
BtsI GCAGTG 1 cut(s) 198
BtsIMutI CAGTG 2 cut(s) 198, 315
Cfr10I RCCGGY 2 cut(s) 259, 376
CseI GACGC 1 cut(s) 75
Csp6I GTAC 1 cut(s) 565
CviAII CATG 1 cut(s) 10
CviQI GTAC 1 cut(s) 565
DdeI CTNAG 3 cut(s) 173, 285, 306
DpnI GATC 1 cut(s) 571
DpnII GATC 1 cut(s) 569
Eam1104I CTCTTC 1 cut(s) 608
EarI CTCTTC 1 cut(s) 608
Eco130I CCWWGG 3 cut(s) 9, 505, 663
Eco57I CTGAAG 1 cut(s) 199
EcoRII CCWGG 1 cut(s) 341
EcoT14I CCWWGG 3 cut(s) 9, 505, 663
ErhI CCWWGG 3 cut(s) 9, 505, 663
FaeI CATG 1 cut(s) 13
FaiI YATR 8 cut(s) 11, 16, 93, 170, 333, 351, 398, 477
FalI AAGNNNNNCTT 1 cut(s) 656
FaqI GGGAC 1 cut(s) 372
FatI CATG 1 cut(s) 9
Fnu4HI GCNGC 4 cut(s) 110, 113, 116, 181
FokI GGATG 2 cut(s) 530, 562
Fsp4HI GCNGC 4 cut(s) 110, 113, 116, 181
FspBI CTAG 1 cut(s) 506
GluI GCNGC 4 cut(s) 110, 113, 116, 181
HapII CCGG 5 cut(s) 260, 377, 434, 542, 580
HgaI GACGC 1 cut(s) 75
Hin1II CATG 1 cut(s) 13
HinfI GANTC 3 cut(s) 55, 551, 618
HpaII CCGG 5 cut(s) 260, 377, 434, 542, 580
Hpy166II GTNNAC 1 cut(s) 444
Hpy188I TCNGA 1 cut(s) 126
Hpy8I GTNNAC 1 cut(s) 444
HpyAV CCTTC 1 cut(s) 153
HpyCH4IV ACGT 2 cut(s) 98, 361
HpyCH4V TGCA 2 cut(s) 247, 294
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 115
HpyF3I CTNAG 3 cut(s) 173, 285, 306
HpySE526I ACGT 2 cut(s) 98, 361
Hsp92II CATG 1 cut(s) 13
Kzo9I GATC 1 cut(s) 569
LmnI GCTCC 2 cut(s) 177, 200
Lsp1109I GCAGC 4 cut(s) 121, 124, 127, 192
LweI GCATC 1 cut(s) 584
MaeI CTAG 1 cut(s) 506
MaeII ACGT 2 cut(s) 98, 361
MaeIII GTNAC 2 cut(s) 47, 313
MalI GATC 1 cut(s) 571
MboI GATC 1 cut(s) 569
MboII GAAGA 3 cut(s) 199, 475, 625
MluCI AATT 2 cut(s) 185, 289
MlyI GAGTC 1 cut(s) 545
MnlI CCTC 9 cut(s) 37, 40, 43, 91, 129, 168, 348, 394, 508
MspA1I CMGCKG 2 cut(s) 219, 305
MspI CCGG 5 cut(s) 260, 377, 434, 542, 580
MspR9I CCNGG 3 cut(s) 343, 543, 580
MvaI CCWGG 1 cut(s) 343
MwoI GCNNNNNNNGC 2 cut(s) 11, 115
NciI CCSGG 2 cut(s) 543, 580
NcoI CCATGG 1 cut(s) 9
NdeII GATC 1 cut(s) 569
NlaIII CATG 1 cut(s) 13
NlaIV GGNNCC 1 cut(s) 202
NmuCI GTSAC 1 cut(s) 313
PfeI GAWTC 2 cut(s) 55, 618
PflFI GACNNNGTC 2 cut(s) 149, 323
PkrI GCNGC 4 cut(s) 111, 114, 117, 182
PleI GAGTC 1 cut(s) 545
PpsI GAGTC 1 cut(s) 545
Psp6I CCWGG 1 cut(s) 341
PspGI CCWGG 1 cut(s) 341
PspN4I GGNNCC 1 cut(s) 202
PsyI GACNNNGTC 2 cut(s) 149, 323
RsaI GTAC 1 cut(s) 566
RsaNI GTAC 1 cut(s) 565
SatI GCNGC 4 cut(s) 110, 113, 116, 181
Sau3AI GATC 1 cut(s) 569
SchI GAGTC 1 cut(s) 545
ScrFI CCNGG 3 cut(s) 343, 543, 580
SetI ASST 5 cut(s) 101, 283, 364, 655, 674
SfaNI GCATC 1 cut(s) 584
Sse9I AATT 2 cut(s) 185, 289
SsiI CCGC 2 cut(s) 219, 303
SspMI CTAG 1 cut(s) 506
StyD4I CCNGG 3 cut(s) 341, 541, 578
StyI CCWWGG 3 cut(s) 9, 505, 663
TaiI ACGT 2 cut(s) 101, 364
TaqI TCGA 2 cut(s) 157, 554
TaqII GACCGA 1 cut(s) 143
TasI AATT 2 cut(s) 185, 289
TatI WGTACW 1 cut(s) 564
TfiI GAWTC 2 cut(s) 55, 618
TscAI CASTG 2 cut(s) 198, 322
TseFI GTSAC 1 cut(s) 313
TseI GCWGC 4 cut(s) 109, 112, 115, 180
Tsp45I GTSAC 1 cut(s) 313
TspGWI ACGGA 1 cut(s) 466
TspRI CASTG 2 cut(s) 198, 322
Tth111I GACNNNGTC 2 cut(s) 149, 323
XmaJI CCTAGG 1 cut(s) 505
XspI CTAG 1 cut(s) 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.