Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009007

Physical Location & Seq

Genomic Coordinates Reverse (-)

22704304 .. 22706141

Gene Structure 1838 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G61360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1497 bp

ATGCTTCAGAAGATCTCCTCCGATTCGTATCGTCGTCTTCTTGCTCCAGTACTATCATCATCTTCATCTTTATCATCTACATCGATAAACAGAACAGAGATCGAACGTATTACAATAATCATCAATGGTCATCCATTCCCAAATCATCCGATTCAACCCATTCTCGCCAAACACATCCCTTTATCTTCTCTGTCACCGGAATTTGTATCAGAAGTTCTCGGTCGTCTCTTCGCTGCTCATTCCAATGGCCTTAAAGCTCTCGAATTCTTCAAGTATTCACTTAAAAGCTCTAAATCTTCTCCCACCTCTGATTCCTTCGAGAAAACACTTCACATTCTCGCACGGATGCGTTATTTCGATCAAGCTTGGGCTTTAATGGCGGAAGTGCGAAAAGACTACCCTAATTTGTTGAGTTTCAAGTCCATGAGCATACTTCTCTGCAAAATCGCTAAATTTGGGTCTTATGAAGAAACTCTAGAAGCTTTCGTGAAGATGGAGAAAGAGATATTCAGAAAGAAATTTGGTGTCGATGAGTTCAATATTCTTCTACGAGCGTTTTGCACAGAGCGAGAGATGAAGGAAGCGAGATCAATTTTCGAAAAATTGCATTCTCGGTTTAACCCAGATGTGAAGACGATGAACATTTTACTTCTAGGGTTTAAGGAAGCTGGTGATGTTACGGCCACGGAGCTGTTTTATCATGAAATGGTGAAACGAGGATTTAAACCAAATTCCGTCACTTACGGTATCAGAATTGATGGGTTCTGCAAAAAACGAAACTTTGGGGAAGCTTTGAGGCTCTTTGAAGATATGGATCGTCTAGATTTTGATATCACGGTACAGATACTCACTACATTGATCCATGGGTCTGGTGTAGCTAGGAACAAGATCAAAGCACGCCAACTGTTCGATGAAATTTCCAAGAGAGGTTTAACACCTGATTGCGGAGCTTATAATGCTTTGATGAGTAGTCTAATGAAGTGTGGAGATGTGAGTGGTGCAATTAAGGTGATGAAGGAGATGGAAGAGAAAGGAATTGAGCCTGACAGTGTAACTTTCCACTCGATGTTTATCGGAATGATGAAATCAAAAGAGTTTGGATTCAATGGGGTATGTGAGTATTACCAGAAAATGAAGGAAAGATCTCTGGTTCCGAAAACACCAACTATAGTGATGCTGATGAAGCTGTTCTGTCACAACGGTGAAGTAAATTTAGGATTAGACCTGTGGAAGTATATGTTGGAGAAAGGGTATTGCCCTCATGGCCACGCATTGGAACTCCTTACCACTGCTTTGTGTGCTCGAAGAAGAGCCAATGATGCATTTGAGTGCTCATGGCAAACAGTAGAGAGAGGAAGGTGTGTGAGCGAACCAGTCTATCGGATGTTAGAGACCTCATTATCAAGCAACAACGAGTTGAAGAAACTAGAAGAACTCAAGGAGGAGATACAAAAACTGCATAGCTTTTTGCCTCCTCCTGAAATACAGCTAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

498

Amino Acids

56.98

Weight (kDa)

8.84

Isoelectric Point (pI)

45.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	208 - 257	5.9e-13	PPR repeat family
PPR_1	PF12854	239 - 271	5.9e-09	PPR repeat
PPR_long	PF17177	247 - 402	2.3e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	266 - 323	1.1e-07	Pentatricopeptide repeat domain
PPR_3	PF13812	302 - 356	5.9e-09	Pentatricopeptide repeat domain
PPR_2	PF13041	313 - 361	2.7e-13	PPR repeat family
PPR	PF01535	317 - 346	1.5e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61360
fragaria_vesca	FvH4_7g04300 FvH4_7g04300 FvH4_7g04300 FvH4_7g04300
malus_domestica	MD03G1030500.v1.1 MD11G1035500.v1.1
prunus_persica	Prupe.2G028200_v2.0.a1 Prupe.2G028200_v2.0.a1 Prupe.2G028200_v2.0.a1 Prupe.2G028200_v2.0.a1
pyrus_communis	pycom11g02950
rosa_chinensis	RchiOBHm_Chr1g0329261
rosa_laevigata	RLG00000029906
rosa_multiflora	Rmu_sc0035610.1_g000001
rosa_roxburghii	Rroxscaffold_4G00321250
rosa_rugosa	Rorug01G0077600
rosa_samantha	Rh1AG096500 Rh1BG077200 Rh1CG093200 Rh1DG099900
rosa_wichuraiana	Rw1G007470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	954
AccB7I	CCANNNNNTGG	1 cut(s)	1273
AciI	CCGC	2 cut(s)	380, 945
AclWI	GGATC	2 cut(s)	822, 853
AcoI	YGGCCR	2 cut(s)	681, 1264
AcsI	RAATTY	7 cut(s)	200, 263, 452, 518, 730, 915, 1210
AfaI	GTAC	2 cut(s)	51, 840
AfiI	CCNNNNNNNGG	2 cut(s)	944, 1273
AgsI	TTSAA	7 cut(s)	155, 271, 418, 538, 806, 1105, 1420
AjuI	GAANNNNNNNTTGG	2 cut(s)	1223, 1255
AleI	CACNNNNGTG	1 cut(s)	1200
Alw21I	GWGCWC	2 cut(s)	1303, 1334
Alw26I	GTCTC	2 cut(s)	230, 1385
AlwI	GGATC	2 cut(s)	822, 853
AoxI	GGCC	3 cut(s)	247, 681, 1264
ApeKI	GCWGC	1 cut(s)	233
ApoI	RAATTY	7 cut(s)	200, 263, 452, 518, 730, 915, 1210
Asp700I	GAANNNNTTC	1 cut(s)	1187
AsuHPI	GGTGA	5 cut(s)	186, 683, 721, 1021, 1214
AsuII	TTCGAA	1 cut(s)	597
BalI	TGGCCA	1 cut(s)	1266
BbsI	GAAGAC	2 cut(s)	29, 638
Bbv12I	GWGCWC	2 cut(s)	1303, 1334
BbvI	GCAGC	1 cut(s)	220
BccI	CCATC	3 cut(s)	487, 752, 1015
BceAI	ACGGC	1 cut(s)	696
BcgI	CGANNNNNNTGC	2 cut(s)	540, 574
BcoDI	GTCTC	2 cut(s)	230, 1385
BfaI	CTAG	5 cut(s)	476, 653, 821, 879, 1427
BfmI	CTRYAG	1 cut(s)	1167
BglI	GCCNNNNNGGC	1 cut(s)	1263
BglII	AGATCT	2 cut(s)	12, 1142
BisI	GCNGC	1 cut(s)	234
BlsI	GCNGC	1 cut(s)	235
BmcAI	AGTACT	1 cut(s)	51
BmiI	GGNNCC	1 cut(s)	1152
BmsI	GCATC	3 cut(s)	336, 1164, 1309
BpiI	GAAGAC	2 cut(s)	29, 638
BpmI	CTGGAG	1 cut(s)	30
Bpu14I	TTCGAA	1 cut(s)	597
BpuEI	CTTGAG	1 cut(s)	1421
Bsa29I	ATCGAT	1 cut(s)	83
BsaBI	GATNNNNATC	3 cut(s)	27, 813, 1070
BsaI	GGTCTC	1 cut(s)	1385
BsaJI	CCNNGG	2 cut(s)	684, 862
BsaWI	WCCGGW	1 cut(s)	196
BsaXI	ACNNNNNCTCC	2 cut(s)	1235, 1265
Bsc4I	CCNNNNNNNGG	2 cut(s)	944, 1273
Bse1I	ACTGG	2 cut(s)	47, 1373
Bse8I	GATNNNNATC	3 cut(s)	27, 813, 1070
BseCI	ATCGAT	1 cut(s)	83
BseDI	CCNNGG	2 cut(s)	684, 862
BseGI	GGATG	5 cut(s)	130, 145, 174, 351, 1389
BseJI	GATNNNNATC	3 cut(s)	27, 813, 1070
BseLI	CCNNNNNNNGG	2 cut(s)	944, 1273
BseNI	ACTGG	2 cut(s)	47, 1373
BseRI	GAGGAG	3 cut(s)	7, 1457, 1464
BseXI	GCAGC	1 cut(s)	220
Bsh1285I	CGRYCG	1 cut(s)	223
BshFI	GGCC	3 cut(s)	249, 683, 1266
BshVI	ATCGAT	1 cut(s)	83
BsiEI	CGRYCG	1 cut(s)	223
BsiHKAI	GWGCWC	2 cut(s)	1303, 1334
BsiSI	CCGG	1 cut(s)	197
BslI	CCNNNNNNNGG	2 cut(s)	944, 1273
BsmAI	GTCTC	2 cut(s)	230, 1385
BsmBI	CGTCTC	1 cut(s)	230
BsmI	GAATGC	1 cut(s)	607
BsnI	GGCC	3 cut(s)	249, 683, 1266
Bso31I	GGTCTC	1 cut(s)	1385
Bsp119I	TTCGAA	1 cut(s)	597
Bsp1286I	GDGCHC	2 cut(s)	1303, 1334
Bsp143I	GATC	8 cut(s)	12, 99, 358, 587, 814, 858, 888, 1142
Bsp19I	CCATGG	1 cut(s)	862
BspACI	CCGC	2 cut(s)	380, 945
BspANI	GGCC	3 cut(s)	249, 683, 1266
BspDI	ATCGAT	1 cut(s)	83
BspHI	TCATGA	1 cut(s)	700
BspLI	GGNNCC	1 cut(s)	1152
BspPI	GGATC	2 cut(s)	822, 853
BspQI	GCTCTTC	1 cut(s)	1303
BspT104I	TTCGAA	1 cut(s)	597
BspTNI	GGTCTC	1 cut(s)	1385
BsrI	ACTGG	2 cut(s)	47, 1373
BssECI	CCNNGG	2 cut(s)	684, 862
BssMI	GATC	8 cut(s)	12, 99, 358, 587, 814, 858, 888, 1142
BssT1I	CCWWGG	1 cut(s)	862
Bst4CI	ACNGT	6 cut(s)	746, 838, 906, 1049, 1202, 1345
Bst6I	CTCTTC	3 cut(s)	233, 1020, 1303
BstBI	TTCGAA	1 cut(s)	597
BstC8I	GCNNGC	1 cut(s)	898
BstDSI	CCRYGG	2 cut(s)	684, 862
BstF5I	GGATG	5 cut(s)	130, 145, 174, 351, 1389
BstKTI	GATC	8 cut(s)	15, 102, 361, 590, 817, 861, 891, 1145
BstMAI	GTCTC	2 cut(s)	230, 1385
BstMBI	GATC	8 cut(s)	12, 99, 358, 587, 814, 858, 888, 1142
BstMCI	CGRYCG	1 cut(s)	223
BstMWI	GCNNNNNNNGC	6 cut(s)	377, 956, 1183, 1263, 1298, 1319
BstSFI	CTRYAG	1 cut(s)	1167
BstV1I	GCAGC	1 cut(s)	220
BstV2I	GAAGAC	2 cut(s)	29, 638
BstX2I	RGATCY	2 cut(s)	12, 1142
BstXI	CCANNNNNNTGG	1 cut(s)	869
BstYI	RGATCY	2 cut(s)	12, 1142
Bsu15I	ATCGAT	1 cut(s)	83
BsuRI	GGCC	3 cut(s)	249, 683, 1266
BsuTUI	ATCGAT	1 cut(s)	83
BtgI	CCRYGG	2 cut(s)	684, 862
BtsCI	GGATG	5 cut(s)	130, 145, 174, 351, 1389
BtsI	GCAGTG	1 cut(s)	1287
BtsIMutI	CAGTG	2 cut(s)	1054, 1287
Cac8I	GCNNGC	1 cut(s)	898
CciI	TCATGA	1 cut(s)	700
ClaI	ATCGAT	1 cut(s)	83
Csp6I	GTAC	2 cut(s)	50, 839
CviAII	CATG	5 cut(s)	424, 701, 863, 1262, 1335
CviQI	GTAC	2 cut(s)	50, 839
DpnI	GATC	8 cut(s)	14, 101, 360, 589, 816, 860, 890, 1144
DpnII	GATC	8 cut(s)	12, 99, 358, 587, 814, 858, 888, 1142
DraI	TTTAAA	1 cut(s)	724
EaeI	YGGCCR	2 cut(s)	681, 1264
Eam1104I	CTCTTC	3 cut(s)	233, 1020, 1303
EarI	CTCTTC	3 cut(s)	233, 1020, 1303
EciI	GGCGGA	1 cut(s)	395
Eco130I	CCWWGG	1 cut(s)	862
Eco31I	GGTCTC	1 cut(s)	1385
Eco32I	GATATC	1 cut(s)	832
EcoRI	GAATTC	1 cut(s)	263
EcoRV	GATATC	1 cut(s)	832
EcoT14I	CCWWGG	1 cut(s)	862
EcoT22I	ATGCAT	1 cut(s)	1324
ErhI	CCWWGG	1 cut(s)	862
Esp3I	CGTCTC	1 cut(s)	230
FaeI	CATG	5 cut(s)	427, 704, 866, 1265, 1338
FatI	CATG	5 cut(s)	423, 700, 862, 1261, 1334
Fnu4HI	GCNGC	1 cut(s)	234
FokI	GGATG	5 cut(s)	117, 132, 161, 358, 1396
Fsp4HI	GCNGC	1 cut(s)	234
FspBI	CTAG	5 cut(s)	476, 653, 821, 879, 1427
GluI	GCNGC	1 cut(s)	234
GsuI	CTGGAG	1 cut(s)	30
HaeIII	GGCC	3 cut(s)	249, 683, 1266
HapII	CCGG	1 cut(s)	197
Hin1II	CATG	5 cut(s)	427, 704, 866, 1265, 1338
HindIII	AAGCTT	3 cut(s)	363, 480, 789
HinfI	GANTC	4 cut(s)	23, 151, 311, 1101
HpaII	CCGG	1 cut(s)	197
HphI	GGTGA	5 cut(s)	186, 683, 721, 1021, 1214
Hpy188III	TCNNGA	7 cut(s)	260, 319, 476, 487, 701, 821, 1478
Hpy99I	CGWCG	1 cut(s)	36
HpyAV	CCTTC	5 cut(s)	325, 571, 1009, 1129, 1350
HpyCH4III	ACNGT	6 cut(s)	746, 838, 906, 1049, 1202, 1345
HpyCH4IV	ACGT	1 cut(s)	106
HpyCH4V	TGCA	7 cut(s)	441, 561, 607, 768, 1001, 1322, 1459
HpyF10VI	GCNNNNNNNGC	6 cut(s)	377, 956, 1183, 1263, 1298, 1319
HpySE526I	ACGT	1 cut(s)	106
Hsp92II	CATG	5 cut(s)	427, 704, 866, 1265, 1338
Kzo9I	GATC	8 cut(s)	12, 99, 358, 587, 814, 858, 888, 1142
LguI	GCTCTTC	1 cut(s)	1303
LmnI	GCTCC	3 cut(s)	49, 688, 947
Lsp1109I	GCAGC	1 cut(s)	220
LweI	GCATC	3 cut(s)	336, 1164, 1309
MaeI	CTAG	5 cut(s)	476, 653, 821, 879, 1427
MaeII	ACGT	1 cut(s)	106
MaeIII	GTNAC	5 cut(s)	192, 676, 736, 1051, 1193
MalI	GATC	8 cut(s)	14, 101, 360, 589, 816, 860, 890, 1144
MboI	GATC	8 cut(s)	12, 99, 358, 587, 814, 858, 888, 1142
MflI	RGATCY	2 cut(s)	12, 1142
MhlI	GDGCHC	2 cut(s)	1303, 1334
MlsI	TGGCCA	1 cut(s)	1266
MluNI	TGGCCA	1 cut(s)	1266
MmeI	TCCRAC	1 cut(s)	1221
Mox20I	TGGCCA	1 cut(s)	1266
Mph1103I	ATGCAT	1 cut(s)	1324
MroXI	GAANNNNTTC	1 cut(s)	1187
MscI	TGGCCA	1 cut(s)	1266
MseI	TTAA	8 cut(s)	252, 282, 374, 618, 660, 723, 932, 1005
MslI	CAYNNNNRTG	3 cut(s)	243, 1200, 1327
Msp20I	TGGCCA	1 cut(s)	1266
MspI	CCGG	1 cut(s)	197
Mva1269I	GAATGC	1 cut(s)	607
MwoI	GCNNNNNNNGC	6 cut(s)	377, 956, 1183, 1263, 1298, 1319
NcoI	CCATGG	1 cut(s)	862
NdeII	GATC	8 cut(s)	12, 99, 358, 587, 814, 858, 888, 1142
NlaIII	CATG	5 cut(s)	427, 704, 866, 1265, 1338
NlaIV	GGNNCC	1 cut(s)	1152
NmuCI	GTSAC	3 cut(s)	192, 736, 1193
NsiI	ATGCAT	1 cut(s)	1324
NspV	TTCGAA	1 cut(s)	597
OliI	CACNNNNGTG	1 cut(s)	1200
PagI	TCATGA	1 cut(s)	700
PciSI	GCTCTTC	1 cut(s)	1303
PctI	GAATGC	1 cut(s)	607
PdmI	GAANNNNTTC	1 cut(s)	1187
PfeI	GAWTC	4 cut(s)	23, 151, 311, 1101
PflMI	CCANNNNNTGG	1 cut(s)	1273
PkrI	GCNGC	1 cut(s)	235
PsiI	TTATAA	1 cut(s)	954
PspN4I	GGNNCC	1 cut(s)	1152
PsrI	GAACNNNNNNTAC	2 cut(s)	198, 230
PsuI	RGATCY	2 cut(s)	12, 1142
RsaI	GTAC	2 cut(s)	51, 840
RsaNI	GTAC	2 cut(s)	50, 839
RseI	CAYNNNNRTG	3 cut(s)	243, 1200, 1327
SapI	GCTCTTC	1 cut(s)	1303
SaqAI	TTAA	8 cut(s)	252, 282, 374, 618, 660, 723, 932, 1005
SatI	GCNGC	1 cut(s)	234
Sau3AI	GATC	8 cut(s)	12, 99, 358, 587, 814, 858, 888, 1142
ScaI	AGTACT	1 cut(s)	51
SduI	GDGCHC	2 cut(s)	1303, 1334
SfaNI	GCATC	3 cut(s)	336, 1164, 1309
SfcI	CTRYAG	1 cut(s)	1167
SfuI	TTCGAA	1 cut(s)	597
SmiMI	CAYNNNNRTG	3 cut(s)	243, 1200, 1327
SmlI	CTYRAG	1 cut(s)	1436
SmoI	CTYRAG	1 cut(s)	1436
SsiI	CCGC	2 cut(s)	380, 945
SspI	AATATT	1 cut(s)	541
SspMI	CTAG	5 cut(s)	476, 653, 821, 879, 1427
StyI	CCWWGG	1 cut(s)	862
TaaI	ACNGT	6 cut(s)	746, 838, 906, 1049, 1202, 1345
TaiI	ACGT	1 cut(s)	109
TaqII	GACCGA	1 cut(s)	209
TatI	WGTACW	1 cut(s)	49
TfiI	GAWTC	4 cut(s)	23, 151, 311, 1101
Tru1I	TTAA	8 cut(s)	252, 282, 374, 618, 660, 723, 932, 1005
Tru9I	TTAA	8 cut(s)	252, 282, 374, 618, 660, 723, 932, 1005
TscAI	CASTG	2 cut(s)	1054, 1294
TseFI	GTSAC	3 cut(s)	192, 736, 1193
TseI	GCWGC	1 cut(s)	233
Tsp45I	GTSAC	3 cut(s)	192, 736, 1193
TspGWI	ACGGA	3 cut(s)	358, 701, 724
TspRI	CASTG	2 cut(s)	1054, 1294
Van91I	CCANNNNNTGG	1 cut(s)	1273
XapI	RAATTY	7 cut(s)	200, 263, 452, 518, 730, 915, 1210
XbaI	TCTAGA	2 cut(s)	475, 820
XmnI	GAANNNNTTC	1 cut(s)	1187
XspI	CTAG	5 cut(s)	476, 653, 821, 879, 1427
ZrmI	AGTACT	1 cut(s)	51
Zsp2I	ATGCAT	1 cut(s)	1324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.