Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0009007

Physical Location & Seq

Genomic Coordinates Reverse (-)

2912997 .. 2917351

Gene Structure 4355 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G028200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1692 bp

ATGCTCCTTATGACAAGATTAAAGAGATCCAATCAACTTACTCAAATTCCTCCGAAGCTAAATTTTTCTGTCATTCACGCTCTTAAAATATCCAGCCAATTTCTACCGTCTTCAGAAACTAATATTGAAGTTGACAGGATCACCAGAATAATTAATAACCATCCGTATCCTGATCAACCACTTCTACCAACTCTTCTCCAGCACATCCCACCCCATGCTCTTTCCACCAGCTTTGTGGAGAATGTTTTGGGTTACCTTTTCGCAGCCCATTCCAATGGTCTTAAAGCCCTTGAATTCTTCAATTATTCCCTCCATCATTCCCAGTTATGTCCAAGCTCAGATGCTTTTGAAAAGACACTGCACATCCTTGCCAGGATGCGGTATTTTGATAAAGCTTGGGACTTGATGGAAAAAATAAGCAGCATGCACCCTTCCTTGCTGACCCTTAAGTCAATGAGCATCATGCTGTCAAAAATTGCAAAATTTCAGTCATATGAAGATGTCCTTGAAGCATTTGGCAAGATGGAGAATGATATTTTTGTTGGGAGGAAGTTTGGTACTGAAGAGTTTAATGTACTCCTTAGAGCATTTTGCACAGAGAGGCAGATGAAGGAGGCACGTTCGGTGTTCCTAAAGATGCATTTTCGGTTTTCACCCAACACCAAGACCATGAATATCTTGCTCTTGGGATTCAAGGAATCTGGAGATATTACTGCAGTAGAACTCTTTTACCATGAACTGGTTAAAAGAGGCTTTGAGCCAAATATTATAACTTACAATATTAGAATCGATGCTTACTGTAAGAAAGGTTGCTTTGCTGATGGTTTGAGACTTTTTGAAGGAATGGAACGGGAAAATTTGTCGCCCACTTTGGAAACAATCACTACATTGATCCACGGAGCAGGGGTTGCTCGAAATCCAATTAAGGCACAGCAATTATTTGATGAGATTCGTTTGAGAAATTTGCTTCCTGATACTGGGGTGTATAATGCTTTGATGAGCTCACTTATTAGATCAAGGGATGTGAAGTCGGCAGTCGCATTGATGGATGAGATGGAAGTGAAGCATATTGAACATGATAATATGACTTATCACACAATGTTCTCTTGCTTGATGAGGACATCTGATATTGACGGTGTTTCTGGACTATATCACAAAATGGTTGACAGAAGTTTTGTGCCCAAAACACGAACAGTGGTGATGTTAATGAAATATTTCTGTGTAAACCAGCAGCTTGATTTGGGATTGCATTTATGGCGATACCTGGTGGAGAAAGGATGTTGTCCTCATGGTCATGCTTTGGACCTTCTGTTAACGGGATTGTGCTCCCGCAGTAGGGTAATAGAAGCTTTTGAGTGCTCCAAACAAATGTTGGAGAGAGGGAGAGATATGAGTGAACCTGCGTTGCGGATATTAGAGAGCTTTCTGGTTCGGGCAGGTGAGATGGACAAGCTGAGGAAGCTCAAGCAGATGATACAGAGATTGCATACTCTGTTGCCCCCATTAAGAGGGCACACTTTTGCTGATCCTGCATCCAAAAATACAGAGGTGGGCATTCCATGTACGTGTGAGCACAAGGAGGTGCAGCAGCCGATTGACATGAGAAAGGTGGTTCATGTTGTTTCCTACTGCAGTAGACCTCTTCCTCATGGAACGAAATGTGGAAAATTTACAGTTCCAGGAAGTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

564

Amino Acids

64.44

Weight (kDa)

8.89

Isoelectric Point (pI)

47.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61360
fragaria_vesca	FvH4_7g04300 FvH4_7g04300 FvH4_7g04300 FvH4_7g04300
malus_domestica	MD03G1030500.v1.1 MD11G1035500.v1.1
prunus_persica	Prupe.2G028200_v2.0.a1 Prupe.2G028200_v2.0.a1 Prupe.2G028200_v2.0.a1 Prupe.2G028200_v2.0.a1
pyrus_communis	pycom11g02950
rosa_chinensis	RchiOBHm_Chr1g0329261
rosa_laevigata	RLG00000029906
rosa_multiflora	Rmu_sc0035610.1_g000001
rosa_roxburghii	Rroxscaffold_4G00321250
rosa_rugosa	Rorug01G0077600
rosa_samantha	Rh1AG096500 Rh1BG077200 Rh1CG093200 Rh1DG099900
rosa_wichuraiana	Rw1G007470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	770
AarI	CACCTGC	1 cut(s)	1427
AasI	GACNNNNNNGTC	1 cut(s)	448
Acc36I	ACCTGC	2 cut(s)	1408, 1427
AccB7I	CCANNNNNTGG	1 cut(s)	739
AccI	GTMKAC	1 cut(s)	1636
AciI	CCGC	3 cut(s)	379, 1330, 1408
AclWI	GGATC	4 cut(s)	21, 146, 886, 1520
AcsI	RAATTY	7 cut(s)	45, 61, 293, 482, 856, 961, 1667
AcuI	CTGAAG	2 cut(s)	96, 582
AfaI	GTAC	3 cut(s)	559, 576, 1564
AfiI	CCNNNNNNNGG	6 cut(s)	378, 739, 977, 1335, 1336, 1508
AflII	CTTAAG	1 cut(s)	446
AflIII	ACRYGT	1 cut(s)	1565
AgsI	TTSAA	8 cut(s)	128, 293, 301, 350, 509, 694, 839, 1073
AjnI	CCWGG	3 cut(s)	371, 1263, 1678
Alw21I	GWGCWC	4 cut(s)	1004, 1328, 1361, 1575
Alw26I	GTCTC	1 cut(s)	823
AlwI	GGATC	4 cut(s)	21, 146, 886, 1520
ApeKI	GCWGC	5 cut(s)	263, 420, 1231, 1585, 1588
ApoI	RAATTY	7 cut(s)	45, 61, 293, 482, 856, 961, 1667
ArsI	GACNNNNNNTTYG	4 cut(s)	473, 505, 1157, 1189
AseI	ATTAAT	1 cut(s)	153
Asp700I	GAANNNNTTC	1 cut(s)	1214
AspS9I	GGNCC	1 cut(s)	1303
AsuHPI	GGTGA	4 cut(s)	133, 645, 1210, 1451
AvaII	GGWCC	1 cut(s)	1303
BaeGI	GKGCMC	2 cut(s)	1182, 1515
BaeI	ACNNNNGTAYC	2 cut(s)	966, 999
BanII	GRGCYC	1 cut(s)	1004
BbsI	GAAGAC	1 cut(s)	102
Bbv12I	GWGCWC	4 cut(s)	1004, 1328, 1361, 1575
BbvCI	CCTCAGC	1 cut(s)	1454
BbvI	GCAGC	5 cut(s)	275, 432, 1243, 1597, 1600
BccI	CCATC	8 cut(s)	168, 321, 400, 517, 815, 1039, 1048, 1438
BciT130I	CCWGG	3 cut(s)	373, 1265, 1680
BciVI	GTATCC	1 cut(s)	177
BclI	TGATCA	1 cut(s)	172
BcoDI	GTCTC	1 cut(s)	823
BfmI	CTRYAG	2 cut(s)	714, 1630
BfrI	CTTAAG	1 cut(s)	446
BfuAI	ACCTGC	2 cut(s)	1408, 1427
BfuI	GTATCC	1 cut(s)	177
BisI	GCNGC	5 cut(s)	264, 421, 1232, 1586, 1589
BlsI	GCNGC	5 cut(s)	265, 422, 1233, 1587, 1590
Bme1390I	CCNGG	3 cut(s)	373, 1265, 1680
Bme18I	GGWCC	1 cut(s)	1303
BmgT120I	GGNCC	1 cut(s)	1303
BmrFI	CCNGG	3 cut(s)	373, 1265, 1680
BmrI	ACTGGG	2 cut(s)	316, 987
BmsI	GCATC	6 cut(s)	331, 366, 468, 627, 781, 1541
BmuI	ACTGGG	2 cut(s)	316, 987
BpiI	GAAGAC	1 cut(s)	102
BpmI	CTGGAG	2 cut(s)	182, 723
Bpu10I	CCTNAGC	1 cut(s)	1454
BpuEI	CTTGAG	1 cut(s)	1448
Bsa29I	ATCGAT	1 cut(s)	789
BsaAI	YACGTR	1 cut(s)	1566
BsaJI	CCNNGG	1 cut(s)	895
BsaXI	ACNNNNNCTCC	2 cut(s)	891, 921
Bsc4I	CCNNNNNNNGG	6 cut(s)	378, 739, 977, 1335, 1336, 1508
Bse1I	ACTGG	3 cut(s)	322, 744, 982
BseBI	CCWGG	3 cut(s)	373, 1265, 1680
BseCI	ATCGAT	1 cut(s)	789
BseDI	CCNNGG	1 cut(s)	895
BseGI	GGATG	8 cut(s)	160, 204, 363, 381, 1027, 1054, 1283, 1532
BseLI	CCNNNNNNNGG	6 cut(s)	378, 739, 977, 1335, 1336, 1508
BseMII	CTCAG	2 cut(s)	351, 1445
BseNI	ACTGG	3 cut(s)	322, 744, 982
BseSI	GKGCMC	2 cut(s)	1182, 1515
BseXI	GCAGC	5 cut(s)	275, 432, 1243, 1597, 1600
BsgI	GTGCAG	2 cut(s)	344, 1604
BshVI	ATCGAT	1 cut(s)	789
BsiHKAI	GWGCWC	4 cut(s)	1004, 1328, 1361, 1575
BslFI	GGGAC	1 cut(s)	413
BslI	CCNNNNNNNGG	6 cut(s)	378, 739, 977, 1335, 1336, 1508
BsmAI	GTCTC	1 cut(s)	823
BsmFI	GGGAC	1 cut(s)	413
BsmI	GAATGC	1 cut(s)	1554
Bsp1286I	GDGCHC	6 cut(s)	1004, 1182, 1328, 1361, 1515, 1575
Bsp143I	GATC	6 cut(s)	26, 138, 172, 891, 1013, 1525
BspACI	CCGC	3 cut(s)	379, 1330, 1408
BspCNI	CTCAG	2 cut(s)	350, 1446
BspDI	ATCGAT	1 cut(s)	789
BspMAI	CTGCAG	2 cut(s)	718, 1634
BspMI	ACCTGC	2 cut(s)	1408, 1427
BspPI	GGATC	4 cut(s)	21, 146, 886, 1520
BspTI	CTTAAG	1 cut(s)	446
BsrI	ACTGG	3 cut(s)	322, 744, 982
BssECI	CCNNGG	1 cut(s)	895
BssMI	GATC	6 cut(s)	26, 138, 172, 891, 1013, 1525
Bst2UI	CCWGG	3 cut(s)	373, 1265, 1680
Bst4CI	ACNGT	5 cut(s)	108, 800, 1136, 1195, 1675
Bst6I	CTCTTC	3 cut(s)	198, 558, 1647
BstAFI	CTTAAG	1 cut(s)	446
BstAPI	GCANNNNNTGC	1 cut(s)	908
BstBAI	YACGTR	1 cut(s)	1566
BstC8I	GCNNGC	1 cut(s)	425
BstDEI	CTNAG	3 cut(s)	337, 581, 1454
BstDSI	CCRYGG	1 cut(s)	895
BstEII	GGTNACC	1 cut(s)	251
BstF5I	GGATG	8 cut(s)	160, 204, 363, 381, 1027, 1054, 1283, 1532
BstKTI	GATC	6 cut(s)	29, 141, 175, 894, 1016, 1528
BstMAI	GTCTC	1 cut(s)	823
BstMBI	GATC	6 cut(s)	26, 138, 172, 891, 1013, 1525
BstMWI	GCNNNNNNNGC	4 cut(s)	908, 1255, 1459, 1529
BstNI	CCWGG	3 cut(s)	373, 1265, 1680
BstNSI	RCATGY	1 cut(s)	427
BstPI	GGTNACC	1 cut(s)	251
BstSCI	CCNGG	3 cut(s)	371, 1263, 1678
BstSFI	CTRYAG	2 cut(s)	714, 1630
BstSLI	GKGCMC	2 cut(s)	1182, 1515
BstV1I	GCAGC	5 cut(s)	275, 432, 1243, 1597, 1600
BstV2I	GAAGAC	1 cut(s)	102
BstX2I	RGATCY	1 cut(s)	26
BstXI	CCANNNNNNTGG	2 cut(s)	235, 275
BstYI	RGATCY	1 cut(s)	26
Bsu15I	ATCGAT	1 cut(s)	789
BsuI	GTATCC	1 cut(s)	177
BsuTUI	ATCGAT	1 cut(s)	789
BtgI	CCRYGG	1 cut(s)	895
BtsCI	GGATG	8 cut(s)	160, 204, 363, 381, 1027, 1054, 1283, 1532
BtsI	GCAGTG	1 cut(s)	356
BtsIMutI	CAGTG	2 cut(s)	356, 1200
BveI	ACCTGC	2 cut(s)	1408, 1427
Cac8I	GCNNGC	1 cut(s)	425
Cfr13I	GGNCC	1 cut(s)	1303
ClaI	ATCGAT	1 cut(s)	789
CsiI	ACCWGGT	1 cut(s)	1263
Csp6I	GTAC	3 cut(s)	558, 575, 1563
CspCI	CAANNNNNGTGG	2 cut(s)	214, 249
CviQI	GTAC	3 cut(s)	558, 575, 1563
DdeI	CTNAG	3 cut(s)	337, 581, 1454
DpnI	GATC	6 cut(s)	28, 140, 174, 893, 1015, 1527
DpnII	GATC	6 cut(s)	26, 138, 172, 891, 1013, 1525
DrdI	GACNNNNNNGTC	1 cut(s)	448
DseDI	GACNNNNNNGTC	1 cut(s)	448
Eam1104I	CTCTTC	3 cut(s)	198, 558, 1647
EarI	CTCTTC	3 cut(s)	198, 558, 1647
Ecl136II	GAGCTC	1 cut(s)	1002
Eco24I	GRGCYC	1 cut(s)	1004
Eco47I	GGWCC	1 cut(s)	1303
Eco53kI	GAGCTC	1 cut(s)	1002
Eco57I	CTGAAG	2 cut(s)	96, 582
Eco91I	GGTNACC	1 cut(s)	251
EcoICRI	GAGCTC	1 cut(s)	1002
EcoO65I	GGTNACC	1 cut(s)	251
EcoRI	GAATTC	1 cut(s)	293
EcoRII	CCWGG	3 cut(s)	371, 1263, 1678
EcoT22I	ATGCAT	1 cut(s)	642
EcoT38I	GRGCYC	1 cut(s)	1004
FalI	AAGNNNNNCTT	2 cut(s)	489, 521
FaqI	GGGAC	1 cut(s)	413
FauI	CCCGC	1 cut(s)	1337
FauNDI	CATATG	1 cut(s)	493
FbaI	TGATCA	1 cut(s)	172
FblI	GTMKAC	1 cut(s)	1636
Fnu4HI	GCNGC	5 cut(s)	264, 421, 1232, 1586, 1589
FokI	GGATG	8 cut(s)	147, 191, 350, 388, 1034, 1061, 1290, 1519
FriOI	GRGCYC	1 cut(s)	1004
Fsp4HI	GCNGC	5 cut(s)	264, 421, 1232, 1586, 1589
GluI	GCNGC	5 cut(s)	264, 421, 1232, 1586, 1589
GsuI	CTGGAG	2 cut(s)	182, 723
HincII	GTYRAC	3 cut(s)	133, 1165, 1314
HindII	GTYRAC	3 cut(s)	133, 1165, 1314
HindIII	AAGCTT	2 cut(s)	393, 1347
HinfI	GANTC	4 cut(s)	690, 698, 786, 949
HpaI	GTTAAC	1 cut(s)	1314
HphI	GGTGA	4 cut(s)	133, 645, 1210, 1451
Hpy166II	GTNNAC	6 cut(s)	133, 1165, 1225, 1314, 1397, 1637
Hpy188I	TCNGA	4 cut(s)	54, 115, 340, 1126
Hpy188III	TCNNGA	4 cut(s)	170, 702, 971, 1143
Hpy8I	GTNNAC	6 cut(s)	133, 1165, 1225, 1314, 1397, 1637
HpyAV	CCTTC	4 cut(s)	441, 604, 833, 1316
HpyCH4III	ACNGT	5 cut(s)	108, 800, 1136, 1195, 1675
HpyCH4IV	ACGT	2 cut(s)	619, 1565
HpyF10VI	GCNNNNNNNGC	4 cut(s)	908, 1255, 1459, 1529
HpyF3I	CTNAG	3 cut(s)	337, 581, 1454
HpySE526I	ACGT	2 cut(s)	619, 1565
Ksp22I	TGATCA	1 cut(s)	172
KspAI	GTTAAC	1 cut(s)	1314
Kzo9I	GATC	6 cut(s)	26, 138, 172, 891, 1013, 1525
LmnI	GCTCC	4 cut(s)	9, 899, 1331, 1364
Lsp1109I	GCAGC	5 cut(s)	275, 432, 1243, 1597, 1600
LweI	GCATC	6 cut(s)	331, 366, 468, 627, 781, 1541
MabI	ACCWGGT	1 cut(s)	1263
MaeII	ACGT	2 cut(s)	619, 1565
MaeIII	GTNAC	1 cut(s)	251
MalI	GATC	6 cut(s)	28, 140, 174, 893, 1015, 1527
MboI	GATC	6 cut(s)	26, 138, 172, 891, 1013, 1525
MboII	GAAGA	6 cut(s)	102, 185, 289, 509, 575, 1634
MflI	RGATCY	1 cut(s)	26
MhlI	GDGCHC	6 cut(s)	1004, 1182, 1328, 1361, 1515, 1575
MmeI	TCCRAC	1 cut(s)	1353
Mph1103I	ATGCAT	1 cut(s)	642
MroXI	GAANNNNTTC	1 cut(s)	1214
MslI	CAYNNNNRTG	3 cut(s)	273, 1293, 1564
MspCI	CTTAAG	1 cut(s)	446
MspR9I	CCNGG	3 cut(s)	373, 1265, 1680
Mva1269I	GAATGC	1 cut(s)	1554
MvaI	CCWGG	3 cut(s)	373, 1265, 1680
MwoI	GCNNNNNNNGC	4 cut(s)	908, 1255, 1459, 1529
NdeI	CATATG	1 cut(s)	493
NdeII	GATC	6 cut(s)	26, 138, 172, 891, 1013, 1525
NsiI	ATGCAT	1 cut(s)	642
NspI	RCATGY	1 cut(s)	427
PaeI	GCATGC	1 cut(s)	427
PaqCI	CACCTGC	1 cut(s)	1427
PctI	GAATGC	1 cut(s)	1554
PdmI	GAANNNNTTC	1 cut(s)	1214
PfeI	GAWTC	4 cut(s)	690, 698, 786, 949
PflMI	CCANNNNNTGG	1 cut(s)	739
PfoI	TCCNGGA	1 cut(s)	1678
PkrI	GCNGC	5 cut(s)	265, 422, 1233, 1587, 1590
Ppu21I	YACGTR	1 cut(s)	1566
PshBI	ATTAAT	1 cut(s)	153
PsiI	TTATAA	1 cut(s)	770
Psp124BI	GAGCTC	1 cut(s)	1004
Psp6I	CCWGG	3 cut(s)	371, 1263, 1678
PspEI	GGTNACC	1 cut(s)	251
PspGI	CCWGG	3 cut(s)	371, 1263, 1678
PspPI	GGNCC	1 cut(s)	1303
PstI	CTGCAG	2 cut(s)	718, 1634
PsuI	RGATCY	1 cut(s)	26
RsaI	GTAC	3 cut(s)	559, 576, 1564
RsaNI	GTAC	3 cut(s)	558, 575, 1563
RseI	CAYNNNNRTG	3 cut(s)	273, 1293, 1564
SacI	GAGCTC	1 cut(s)	1004
SatI	GCNGC	5 cut(s)	264, 421, 1232, 1586, 1589
Sau3AI	GATC	6 cut(s)	26, 138, 172, 891, 1013, 1525
Sau96I	GGNCC	1 cut(s)	1303
ScrFI	CCNGG	3 cut(s)	373, 1265, 1680
SduI	GDGCHC	6 cut(s)	1004, 1182, 1328, 1361, 1515, 1575
SexAI	ACCWGGT	1 cut(s)	1263
SfaNI	GCATC	6 cut(s)	331, 366, 468, 627, 781, 1541
SfcI	CTRYAG	2 cut(s)	714, 1630
SinI	GGWCC	1 cut(s)	1303
SmiMI	CAYNNNNRTG	3 cut(s)	273, 1293, 1564
SmlI	CTYRAG	2 cut(s)	446, 1463
SmoI	CTYRAG	2 cut(s)	446, 1463
SphI	GCATGC	1 cut(s)	427
SsiI	CCGC	3 cut(s)	379, 1330, 1408
SspI	AATATT	4 cut(s)	124, 766, 781, 1214
SstI	GAGCTC	1 cut(s)	1004
StyD4I	CCNGG	3 cut(s)	371, 1263, 1678
TaaI	ACNGT	5 cut(s)	108, 800, 1136, 1195, 1675
TaiI	ACGT	2 cut(s)	622, 1568
TaqI	TCGA	2 cut(s)	789, 913
TatI	WGTACW	1 cut(s)	574
TfiI	GAWTC	4 cut(s)	690, 698, 786, 949
TscAI	CASTG	2 cut(s)	363, 1200
TseI	GCWGC	5 cut(s)	263, 420, 1231, 1585, 1588
TspDTI	ATGAA	6 cut(s)	510, 623, 686, 750, 1223, 1604
TspGWI	ACGGA	2 cut(s)	153, 912
TspRI	CASTG	2 cut(s)	363, 1200
Van91I	CCANNNNNTGG	1 cut(s)	739
Vha464I	CTTAAG	1 cut(s)	446
VpaK11BI	GGWCC	1 cut(s)	1303
VspI	ATTAAT	1 cut(s)	153
XapI	RAATTY	7 cut(s)	45, 61, 293, 482, 856, 961, 1667
XceI	RCATGY	1 cut(s)	427
XcmI	CCANNNNNNNNNTGG	2 cut(s)	232, 1369
XmiI	GTMKAC	1 cut(s)	1636
XmnI	GAANNNNTTC	1 cut(s)	1214
Zsp2I	ATGCAT	1 cut(s)	642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.