Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0009007

Physical Location & Seq

Genomic Coordinates Forward (+)

12665996 .. 12667090

Gene Structure 1095 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0077600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGCTTTATGGGTTCGAATCTGTGGGCTGCCTGTGAAATACTTTACGGATTACACTATTGACAAAATTGGTAGAGTTCTTGGTGATGTTGTCAAGATTGATCAGGTCACTATAGGCCAAGCTAGAGGAAAATTTGCCAGAGTATGTGTTGAAATTGATCTTAATAAGCCTCTTAAGCCTTTTGTGGAAATGGAAACAGTGGTGTACAATGATGGTACTGTGAAGCATGACTCTGGTAGCCCTGTGGACCAGGCAACTATGCTCAAGGAAAATATGGGTCCGTGGATGTTGATGAACTATCGGAATAAGAAGAAAAACAATGAGGCTAATGGTCCTAAGAAAAATGCTAATAAGGATTCTAGGTTCACAGTTTTGCAAGATGAGGCTGCTGTTACTGATGCTGTGCTTGAGATGATTCCTGACAATTCTACCAAGACTTCAATTGTGCCAATTGTGAAACTTTGGACTAGCTTCCAAGAGAAGGAGAAGAACCTAAACAAGGCCAACCTTGCTAAATCTGACTTATCTTCTACTCCTGAAAATGCTGGTATTGGTACTTCTACATCTGGAACTATGAAGGCTAGTCCTCGAGCCCCACTTAAAGATGTTTCTAATATGGAGAGCAACAGTGGCTCTAAGTCAACTATGCAATACCAAAGGAAGTCCAAAGGTACCATCCCTTCTAATGCTAAACACCAACCTATTGTTTTCAAGAAACTATCCTTTGAGAATGTTGGAAATGTGTTTGATGATGGTATTTCTGCAGTCTTTGGCCATTGTCCTCCTGAGGAAAGGATGTTGGATGCTAGGTCTGATCCATCCTCGTTTCAGGCCTCTGTTTGTTTTGTTGAGAAGACTTTTGCTGATAATAGCAAACTGACTAGTGATGACAACCTGCCTTCCCAAGTTGGGGAAGGTATGGTGGATGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

310

Amino Acids

34.05

Weight (kDa)

8.19

Isoelectric Point (pI)

24.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61360
fragaria_vesca	FvH4_7g04300 FvH4_7g04300 FvH4_7g04300 FvH4_7g04300
malus_domestica	MD03G1030500.v1.1 MD11G1035500.v1.1
prunus_persica	Prupe.2G028200_v2.0.a1 Prupe.2G028200_v2.0.a1 Prupe.2G028200_v2.0.a1 Prupe.2G028200_v2.0.a1
pyrus_communis	pycom11g02950
rosa_chinensis	RchiOBHm_Chr1g0329261
rosa_laevigata	RLG00000029906
rosa_multiflora	Rmu_sc0035610.1_g000001
rosa_roxburghii	Rroxscaffold_4G00321250
rosa_rugosa	Rorug01G0077600
rosa_samantha	Rh1AG096500 Rh1BG077200 Rh1CG093200 Rh1DG099900
rosa_wichuraiana	Rw1G007470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	903
Acc65I	GGTACC	1 cut(s)	671
AccB1I	GGYRCC	1 cut(s)	671
AclWI	GGATC	1 cut(s)	809
AcoI	YGGCCR	1 cut(s)	772
AcsI	RAATTY	1 cut(s)	131
AfaI	GTAC	4 cut(s)	206, 217, 556, 673
AfiI	CCNNNNNNNGG	4 cut(s)	481, 499, 909, 910
AflII	CTTAAG	1 cut(s)	173
AgsI	TTSAA	3 cut(s)	152, 441, 712
AhlI	ACTAGT	1 cut(s)	881
AjnI	CCWGG	1 cut(s)	249
AloI	GAACNNNNNNTCC	2 cut(s)	347, 379
AluBI	AGCT	2 cut(s)	122, 471
AluI	AGCT	2 cut(s)	122, 471
AlwI	GGATC	1 cut(s)	809
Ama87I	CYCGRG	1 cut(s)	588
AoxI	GGCC	4 cut(s)	115, 501, 772, 831
ApeKI	GCWGC	2 cut(s)	28, 386
ApoI	RAATTY	1 cut(s)	131
Asp718I	GGTACC	1 cut(s)	671
AspS9I	GGNCC	3 cut(s)	247, 278, 332
AsuHPI	GGTGA	1 cut(s)	95
AsuII	TTCGAA	1 cut(s)	16
AvaI	CYCGRG	1 cut(s)	588
AvaII	GGWCC	3 cut(s)	247, 278, 332
AxyI	CCTNAGG	1 cut(s)	786
BalI	TGGCCA	1 cut(s)	774
BanI	GGYRCC	1 cut(s)	671
BanII	GRGCYC	1 cut(s)	595
BarI	GAAGNNNNNNTAC	4 cut(s)	541, 573, 664, 696
BbsI	GAAGAC	1 cut(s)	860
BbvI	GCAGC	2 cut(s)	15, 373
BccI	CCATC	4 cut(s)	206, 683, 746, 826
BciT130I	CCWGG	1 cut(s)	251
BclI	TGATCA	1 cut(s)	100
BcuI	ACTAGT	1 cut(s)	881
BfaI	CTAG	6 cut(s)	123, 360, 468, 582, 807, 882
BfmI	CTRYAG	2 cut(s)	111, 762
BfrI	CTTAAG	1 cut(s)	173
BfuAI	ACCTGC	1 cut(s)	903
BisI	GCNGC	2 cut(s)	29, 387
BlsI	GCNGC	2 cut(s)	30, 388
Bme1390I	CCNGG	1 cut(s)	251
Bme18I	GGWCC	3 cut(s)	247, 278, 332
BmeT110I	CYCGRG	1 cut(s)	588
BmgT120I	GGNCC	3 cut(s)	247, 278, 332
BmiI	GGNNCC	2 cut(s)	279, 673
BmrFI	CCNGG	1 cut(s)	251
BmsI	GCATC	3 cut(s)	388, 793, 916
BpiI	GAAGAC	1 cut(s)	860
Bpu14I	TTCGAA	1 cut(s)	16
BpuEI	CTTGAG	2 cut(s)	248, 428
BsaJI	CCNNGG	1 cut(s)	281
Bsc4I	CCNNNNNNNGG	4 cut(s)	481, 499, 909, 910
Bse21I	CCTNAGG	1 cut(s)	786
BseBI	CCWGG	1 cut(s)	251
BseDI	CCNNGG	1 cut(s)	281
BseGI	GGATG	6 cut(s)	291, 675, 801, 808, 818, 931
BseLI	CCNNNNNNNGG	4 cut(s)	481, 499, 909, 910
BseMII	CTCAG	1 cut(s)	777
BseXI	GCAGC	2 cut(s)	15, 373
BshFI	GGCC	4 cut(s)	117, 503, 774, 833
BshNI	GGYRCC	1 cut(s)	671
BsiHKCI	CYCGRG	1 cut(s)	588
BslI	CCNNNNNNNGG	4 cut(s)	481, 499, 909, 910
BsnI	GGCC	4 cut(s)	117, 503, 774, 833
BsoBI	CYCGRG	1 cut(s)	588
Bsp119I	TTCGAA	1 cut(s)	16
Bsp1286I	GDGCHC	1 cut(s)	595
Bsp1407I	TGTACA	1 cut(s)	204
Bsp143I	GATC	3 cut(s)	100, 157, 814
BspANI	GGCC	4 cut(s)	117, 503, 774, 833
BspCNI	CTCAG	1 cut(s)	778
BspLI	GGNNCC	2 cut(s)	279, 673
BspMAI	CTGCAG	1 cut(s)	766
BspMI	ACCTGC	1 cut(s)	903
BspPI	GGATC	1 cut(s)	809
BspT104I	TTCGAA	1 cut(s)	16
BspT107I	GGYRCC	1 cut(s)	671
BspTI	CTTAAG	1 cut(s)	173
BsrGI	TGTACA	1 cut(s)	204
BssECI	CCNNGG	1 cut(s)	281
BssMI	GATC	3 cut(s)	100, 157, 814
Bst2UI	CCWGG	1 cut(s)	251
Bst4CI	ACNGT	4 cut(s)	199, 220, 370, 629
BstAFI	CTTAAG	1 cut(s)	173
BstAUI	TGTACA	1 cut(s)	204
BstBI	TTCGAA	1 cut(s)	16
BstDEI	CTNAG	3 cut(s)	336, 636, 786
BstDSI	CCRYGG	1 cut(s)	281
BstENI	CCTNNNNNAGG	1 cut(s)	497
BstF5I	GGATG	6 cut(s)	291, 675, 801, 808, 818, 931
BstKTI	GATC	3 cut(s)	103, 160, 817
BstMBI	GATC	3 cut(s)	100, 157, 814
BstMWI	GCNNNNNNNGC	3 cut(s)	175, 509, 630
BstNI	CCWGG	1 cut(s)	251
BstSCI	CCNGG	1 cut(s)	249
BstSFI	CTRYAG	2 cut(s)	111, 762
BstV1I	GCAGC	2 cut(s)	15, 373
BstV2I	GAAGAC	1 cut(s)	860
Bsu36I	CCTNAGG	1 cut(s)	786
BsuRI	GGCC	4 cut(s)	117, 503, 774, 833
BtgI	CCRYGG	1 cut(s)	281
BtsCI	GGATG	6 cut(s)	291, 675, 801, 808, 818, 931
BtsIMutI	CAGTG	2 cut(s)	204, 634
BveI	ACCTGC	1 cut(s)	903
Cfr13I	GGNCC	3 cut(s)	247, 278, 332
Csp6I	GTAC	4 cut(s)	205, 216, 555, 672
CviAII	CATG	1 cut(s)	227
CviQI	GTAC	4 cut(s)	205, 216, 555, 672
DdeI	CTNAG	3 cut(s)	336, 636, 786
DpnI	GATC	3 cut(s)	102, 159, 816
DpnII	GATC	3 cut(s)	100, 157, 814
EaeI	YGGCCR	1 cut(s)	772
Eco147I	AGGCCT	1 cut(s)	833
Eco24I	GRGCYC	1 cut(s)	595
Eco47I	GGWCC	3 cut(s)	247, 278, 332
Eco81I	CCTNAGG	1 cut(s)	786
Eco88I	CYCGRG	1 cut(s)	588
EcoNI	CCTNNNNNAGG	1 cut(s)	497
EcoRII	CCWGG	1 cut(s)	249
EcoT38I	GRGCYC	1 cut(s)	595
FaeI	CATG	1 cut(s)	230
FatI	CATG	1 cut(s)	226
FbaI	TGATCA	1 cut(s)	100
Fnu4HI	GCNGC	2 cut(s)	29, 387
FokI	GGATG	5 cut(s)	298, 662, 805, 808, 815
FriOI	GRGCYC	1 cut(s)	595
Fsp4HI	GCNGC	2 cut(s)	29, 387
FspBI	CTAG	6 cut(s)	123, 360, 468, 582, 807, 882
GluI	GCNGC	2 cut(s)	29, 387
HaeIII	GGCC	4 cut(s)	117, 503, 774, 833
Hin1II	CATG	1 cut(s)	230
HincII	GTYRAC	1 cut(s)	642
HindII	GTYRAC	1 cut(s)	642
HinfI	GANTC	4 cut(s)	18, 230, 356, 415
HphI	GGTGA	1 cut(s)	95
Hpy166II	GTNNAC	4 cut(s)	205, 247, 366, 642
Hpy188I	TCNGA	3 cut(s)	303, 520, 814
Hpy188III	TCNNGA	6 cut(s)	94, 419, 536, 567, 712, 785
Hpy8I	GTNNAC	4 cut(s)	205, 247, 366, 642
HpyAV	CCTTC	5 cut(s)	475, 571, 690, 908, 909
HpyCH4III	ACNGT	4 cut(s)	199, 220, 370, 629
HpyCH4V	TGCA	3 cut(s)	376, 649, 764
HpyF10VI	GCNNNNNNNGC	3 cut(s)	175, 509, 630
HpyF3I	CTNAG	3 cut(s)	336, 636, 786
Hsp92II	CATG	1 cut(s)	230
KpnI	GGTACC	1 cut(s)	675
Ksp22I	TGATCA	1 cut(s)	100
Kzo9I	GATC	3 cut(s)	100, 157, 814
Lsp1109I	GCAGC	2 cut(s)	15, 373
LweI	GCATC	3 cut(s)	388, 793, 916
MaeI	CTAG	6 cut(s)	123, 360, 468, 582, 807, 882
MaeIII	GTNAC	2 cut(s)	106, 391
MalI	GATC	3 cut(s)	102, 159, 816
MboI	GATC	3 cut(s)	100, 157, 814
MboII	GAAGA	4 cut(s)	322, 499, 519, 865
MfeI	CAATTG	2 cut(s)	441, 450
MhlI	GDGCHC	1 cut(s)	595
MlsI	TGGCCA	1 cut(s)	774
MluCI	AATT	6 cut(s)	66, 131, 153, 424, 441, 450
MluNI	TGGCCA	1 cut(s)	774
MlyI	GAGTC	1 cut(s)	224
MmeI	TCCRAC	2 cut(s)	715, 780
MnlI	CCTC	9 cut(s)	119, 180, 316, 376, 597, 781, 792, 832, 844
Mox20I	TGGCCA	1 cut(s)	774
MscI	TGGCCA	1 cut(s)	774
MseI	TTAA	3 cut(s)	162, 174, 600
Msp20I	TGGCCA	1 cut(s)	774
MspCI	CTTAAG	1 cut(s)	173
MspR9I	CCNGG	1 cut(s)	251
MunI	CAATTG	2 cut(s)	441, 450
MvaI	CCWGG	1 cut(s)	251
MwoI	GCNNNNNNNGC	3 cut(s)	175, 509, 630
NdeII	GATC	3 cut(s)	100, 157, 814
NlaIII	CATG	1 cut(s)	230
NlaIV	GGNNCC	2 cut(s)	279, 673
NmuCI	GTSAC	1 cut(s)	106
NspV	TTCGAA	1 cut(s)	16
PaeR7I	CTCGAG	1 cut(s)	588
PceI	AGGCCT	1 cut(s)	833
PfeI	GAWTC	3 cut(s)	18, 356, 415
PkrI	GCNGC	2 cut(s)	30, 388
PleI	GAGTC	1 cut(s)	224
PpsI	GAGTC	1 cut(s)	224
Psp6I	CCWGG	1 cut(s)	249
PspGI	CCWGG	1 cut(s)	249
PspN4I	GGNNCC	2 cut(s)	279, 673
PspPI	GGNCC	3 cut(s)	247, 278, 332
PspXI	VCTCGAGB	1 cut(s)	588
PstI	CTGCAG	1 cut(s)	766
RsaI	GTAC	4 cut(s)	206, 217, 556, 673
RsaNI	GTAC	4 cut(s)	205, 216, 555, 672
SaqAI	TTAA	3 cut(s)	162, 174, 600
SatI	GCNGC	2 cut(s)	29, 387
Sau3AI	GATC	3 cut(s)	100, 157, 814
Sau96I	GGNCC	3 cut(s)	247, 278, 332
SchI	GAGTC	1 cut(s)	224
ScrFI	CCNGG	1 cut(s)	251
SduI	GDGCHC	1 cut(s)	595
SfaNI	GCATC	3 cut(s)	388, 793, 916
SfcI	CTRYAG	2 cut(s)	111, 762
Sfr274I	CTCGAG	1 cut(s)	588
SfuI	TTCGAA	1 cut(s)	16
SinI	GGWCC	3 cut(s)	247, 278, 332
SlaI	CTCGAG	1 cut(s)	588
SmlI	CTYRAG	4 cut(s)	173, 263, 407, 588
SmoI	CTYRAG	4 cut(s)	173, 263, 407, 588
SpeI	ACTAGT	1 cut(s)	881
Sse9I	AATT	6 cut(s)	66, 131, 153, 424, 441, 450
SseBI	AGGCCT	1 cut(s)	833
SspMI	CTAG	6 cut(s)	123, 360, 468, 582, 807, 882
StuI	AGGCCT	1 cut(s)	833
StyD4I	CCNGG	1 cut(s)	249
TaaI	ACNGT	4 cut(s)	199, 220, 370, 629
TaqI	TCGA	2 cut(s)	16, 589
TasI	AATT	6 cut(s)	66, 131, 153, 424, 441, 450
TatI	WGTACW	1 cut(s)	204
TfiI	GAWTC	3 cut(s)	18, 356, 415
Tru1I	TTAA	3 cut(s)	162, 174, 600
Tru9I	TTAA	3 cut(s)	162, 174, 600
TscAI	CASTG	2 cut(s)	204, 634
TseFI	GTSAC	1 cut(s)	106
TseI	GCWGC	2 cut(s)	28, 386
Tsp45I	GTSAC	1 cut(s)	106
TspDTI	ATGAA	2 cut(s)	308, 590
TspGWI	ACGGA	2 cut(s)	62, 270
TspRI	CASTG	2 cut(s)	204, 634
Vha464I	CTTAAG	1 cut(s)	173
VpaK11BI	GGWCC	3 cut(s)	247, 278, 332
XagI	CCTNNNNNAGG	1 cut(s)	497
XapI	RAATTY	1 cut(s)	131
XhoI	CTCGAG	1 cut(s)	588
XspI	CTAG	6 cut(s)	123, 360, 468, 582, 807, 882

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.