Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0009007

Physical Location & Seq

Genomic Coordinates Reverse (-)

4881569 .. 4885619

Gene Structure 4051 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g04300.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGCTCCTTTTGGCAAGACTCAAGAGTGGAACCAATCCATTTACTCAAACCCCTCTAAAGCTAAGATTTTCGCTTGTATCGCTATCCAGCCAATGTGTATCGTCTGTAGAAGCGGATATAGACATTGATAGGATTACCAAGATTATTAACAACCACCCGTATCCTGATCAGCCACTTCAACCGGCTCTTCTCCAGAATATCCCACCAACTCTTCTTTCTACAAGCTTTGTGGAGAATGTTCTTGGTCATCTTTTCGGAGCACATTCCAATGGTCTCAAAGCTCTTGAGTTCTTCAATTATTCCCTCCATCATTCCCAGTTGTGTCCGAGTTCAGATGCTTTTGAGAAGACGCTGCACATCCTTACCAGGATGCGCTATTTTGATAAAGCGTGGGAGTTGATGGCAAAAATAAGTAGTATGCATCCGTCTTTGCTTACCCTGAAGTCGATGAGCATTATGCTGTCGAAAATCGCAAAGTTTCAATCCTATGAAGATGTGCTTGCAGCATTTGAGAAGATGGAGACTGATATTTTTGTGGGCAGGAAGTTCGGGACTGATGAGTTTAATGTACTCCTTAGGGCGTTTTGTACACAAAGACAAATGAAGGAGGCACGCTCGATTTTCATAAAGATGCATTCTCGATTTTCGCCCAACACCAAGACCATGAATATCTTGCTCTTGGGGTTCAAGGAAGCTGGAGATATTACTGCAGTAGAACTCTTTTACCATGAGCTGGCTAGAAGAGGCTTTAAGCCAAACAGTATAACTTATAATATAAGGATTGATGCTTACTGTAAAAGAGGCTGCTTTGCTGATGCACTGAGGCTTTTTGAGGAGATGGAAAGGGCCAATTTGTCGCCTACTTTAGAGACAATCACTACACTGATTCATGGAGCTGGGGTTGTTCGAAATCCAATTAAAGCACAACAGTTATTTGATGAGATTCATTTGAGAAATTTGCTTCCTGATACTGGGGCCTATAATGCTTTAATGAGTTCACTGATTAGAGCCAAAGATGTGCAGTCGGCAGTCGCCTTGATGGATGAGATGGAAGAGAAGCATATTAAGCATGATCATATGACTTATCACACCATGTTCCATGGCCTGATGAGAACATCCGGTATCGAGGGGGCTTCTGATCTGTATTACAAAATGGTTGATAGAAATTTTGTGCCCAAACCACGAACAGTGCATTATGTTCCCGCAGTAGGACGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

406

Amino Acids

46.13

Weight (kDa)

8.92

Isoelectric Point (pI)

42.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	188 - 229	1.1e-06	PPR repeat family
PPR_2	PF13041	217 - 266	1.7e-10	PPR repeat family
TPR_24	PF23276	245 - 346	9.3e-08	Fungal tetratrico peptide repeats
PPR_1	PF12854	248 - 281	5.6e-10	PPR repeat
PPR_2	PF13041	252 - 298	2e-13	PPR repeat family
PPR	PF01535	255 - 284	8.2e-08	PPR repeat
PPR_long	PF17177	269 - 388	6.7e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	322 - 370	1.9e-11	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61360
fragaria_vesca	FvH4_7g04300 FvH4_7g04300 FvH4_7g04300 FvH4_7g04300
malus_domestica	MD03G1030500.v1.1 MD11G1035500.v1.1
prunus_persica	Prupe.2G028200_v2.0.a1 Prupe.2G028200_v2.0.a1 Prupe.2G028200_v2.0.a1 Prupe.2G028200_v2.0.a1
pyrus_communis	pycom11g02950
rosa_chinensis	RchiOBHm_Chr1g0329261
rosa_laevigata	RLG00000029906
rosa_multiflora	Rmu_sc0035610.1_g000001
rosa_roxburghii	Rroxscaffold_4G00321250
rosa_rugosa	Rorug01G0077600
rosa_samantha	Rh1AG096500 Rh1BG077200 Rh1CG093200 Rh1DG099900
rosa_wichuraiana	Rw1G007470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	771
AccB7I	CCANNNNNTGG	1 cut(s)	733
AciI	CCGC	2 cut(s)	113, 1203
AcsI	RAATTY	2 cut(s)	955, 1165
AcuI	CTGAAG	1 cut(s)	461
AfaI	GTAC	2 cut(s)	570, 589
AfiI	CCNNNNNNNGG	3 cut(s)	733, 971, 1208
AgsI	TTSAA	4 cut(s)	179, 295, 482, 688
AjnI	CCWGG	1 cut(s)	365
AjuI	GAANNNNNNNTTGG	2 cut(s)	199, 231
AluBI	AGCT	6 cut(s)	61, 225, 281, 695, 733, 896
AluI	AGCT	6 cut(s)	61, 225, 281, 695, 733, 896
Alw21I	GWGCWC	1 cut(s)	262
Alw26I	GTCTC	3 cut(s)	278, 515, 863
AoxI	GGCC	3 cut(s)	846, 975, 1102
ApeKI	GCWGC	3 cut(s)	352, 503, 804
ApoI	RAATTY	2 cut(s)	955, 1165
AspLEI	GCGC	1 cut(s)	375
AspS9I	GGNCC	2 cut(s)	846, 975
AsuII	TTCGAA	1 cut(s)	907
AxyI	CCTNAGG	1 cut(s)	575
BaeGI	GKGCMC	1 cut(s)	1176
BbsI	GAAGAC	1 cut(s)	353
Bbv12I	GWGCWC	1 cut(s)	262
BbvI	GCAGC	3 cut(s)	339, 515, 791
BccI	CCATC	6 cut(s)	315, 394, 511, 832, 1033, 1042
BcgI	CGANNNNNNTGC	2 cut(s)	529, 563
BciT130I	CCWGG	1 cut(s)	367
BciVI	GTATCC	1 cut(s)	171
BclI	TGATCA	2 cut(s)	166, 1072
BcoDI	GTCTC	3 cut(s)	278, 515, 863
BfaI	CTAG	1 cut(s)	738
BfmI	CTRYAG	2 cut(s)	105, 708
BfuI	GTATCC	1 cut(s)	171
BisI	GCNGC	3 cut(s)	353, 504, 805
BlsI	GCNGC	3 cut(s)	354, 505, 806
Bme1390I	CCNGG	1 cut(s)	367
BmgT120I	GGNCC	2 cut(s)	846, 975
BmiI	GGNNCC	2 cut(s)	31, 976
BmrFI	CCNGG	1 cut(s)	367
BmrI	ACTGGG	2 cut(s)	310, 981
BmsI	GCATC	6 cut(s)	325, 360, 430, 621, 775, 805
BmuI	ACTGGG	2 cut(s)	310, 981
BpiI	GAAGAC	1 cut(s)	353
BplI	GAGNNNNNCTC	2 cut(s)	599, 631
BpmI	CTGGAG	2 cut(s)	176, 717
Bpu14I	TTCGAA	1 cut(s)	907
BpuEI	CTTGAG	2 cut(s)	5, 305
BsaI	GGTCTC	1 cut(s)	278
BsaJI	CCNNGG	1 cut(s)	1099
BsaWI	WCCGGW	1 cut(s)	1118
BsaXI	ACNNNNNCTCC	2 cut(s)	885, 915
Bsc4I	CCNNNNNNNGG	3 cut(s)	733, 971, 1208
Bse118I	RCCGGY	1 cut(s)	181
Bse1I	ACTGG	2 cut(s)	316, 976
Bse21I	CCTNAGG	1 cut(s)	575
BseBI	CCWGG	1 cut(s)	367
BseDI	CCNNGG	1 cut(s)	1099
BseGI	GGATG	5 cut(s)	357, 375, 421, 1048, 1115
BseLI	CCNNNNNNNGG	3 cut(s)	733, 971, 1208
BseMII	CTCAG	1 cut(s)	812
BseNI	ACTGG	2 cut(s)	316, 976
BseRI	GAGGAG	1 cut(s)	848
BseSI	GKGCMC	1 cut(s)	1176
BseXI	GCAGC	3 cut(s)	339, 515, 791
BseYI	CCCAGC	1 cut(s)	896
BsgI	GTGCAG	2 cut(s)	338, 1040
BshFI	GGCC	3 cut(s)	848, 977, 1104
BsiHKAI	GWGCWC	1 cut(s)	262
BsiSI	CCGG	2 cut(s)	182, 1119
BslFI	GGGAC	1 cut(s)	565
BslI	CCNNNNNNNGG	3 cut(s)	733, 971, 1208
BsmAI	GTCTC	3 cut(s)	278, 515, 863
BsmFI	GGGAC	1 cut(s)	565
BsmI	GAATGC	1 cut(s)	634
BsnI	GGCC	3 cut(s)	848, 977, 1104
Bso31I	GGTCTC	1 cut(s)	278
Bsp119I	TTCGAA	1 cut(s)	907
Bsp1286I	GDGCHC	2 cut(s)	262, 1176
Bsp1407I	TGTACA	1 cut(s)	587
Bsp143I	GATC	3 cut(s)	166, 1072, 1138
Bsp19I	CCATGG	1 cut(s)	1099
BspACI	CCGC	2 cut(s)	113, 1203
BspANI	GGCC	3 cut(s)	848, 977, 1104
BspCNI	CTCAG	1 cut(s)	813
BspLI	GGNNCC	2 cut(s)	31, 976
BspMAI	CTGCAG	1 cut(s)	712
BspQI	GCTCTTC	1 cut(s)	192
BspT104I	TTCGAA	1 cut(s)	907
BspTNI	GGTCTC	1 cut(s)	278
BsrFI	RCCGGY	1 cut(s)	181
BsrGI	TGTACA	1 cut(s)	587
BsrI	ACTGG	2 cut(s)	316, 976
BssAI	RCCGGY	1 cut(s)	181
BssECI	CCNNGG	1 cut(s)	1099
BssMI	GATC	3 cut(s)	166, 1072, 1138
BssT1I	CCWWGG	1 cut(s)	1099
Bst2UI	CCWGG	1 cut(s)	367
Bst4CI	ACNGT	4 cut(s)	761, 794, 930, 1189
Bst6I	CTCTTC	4 cut(s)	192, 216, 736, 1047
BstAUI	TGTACA	1 cut(s)	587
BstBI	TTCGAA	1 cut(s)	907
BstC8I	GCNNGC	3 cut(s)	501, 613, 735
BstDEI	CTNAG	3 cut(s)	62, 575, 821
BstDSI	CCRYGG	1 cut(s)	1099
BstF5I	GGATG	5 cut(s)	357, 375, 421, 1048, 1115
BstHHI	GCGC	1 cut(s)	375
BstKTI	GATC	3 cut(s)	169, 1075, 1141
BstMAI	GTCTC	3 cut(s)	278, 515, 863
BstMBI	GATC	3 cut(s)	166, 1072, 1138
BstMWI	GCNNNNNNNGC	3 cut(s)	79, 983, 1066
BstNI	CCWGG	1 cut(s)	367
BstSCI	CCNGG	1 cut(s)	365
BstSFI	CTRYAG	2 cut(s)	105, 708
BstSLI	GKGCMC	1 cut(s)	1176
BstV1I	GCAGC	3 cut(s)	339, 515, 791
BstV2I	GAAGAC	1 cut(s)	353
Bsu36I	CCTNAGG	1 cut(s)	575
BsuI	GTATCC	1 cut(s)	171
BsuRI	GGCC	3 cut(s)	848, 977, 1104
BtgI	CCRYGG	1 cut(s)	1099
BtsCI	GGATG	5 cut(s)	357, 375, 421, 1048, 1115
BtsIMutI	CAGTG	4 cut(s)	818, 881, 998, 1194
Cac8I	GCNNGC	3 cut(s)	501, 613, 735
CfoI	GCGC	1 cut(s)	375
Cfr10I	RCCGGY	1 cut(s)	181
Cfr13I	GGNCC	2 cut(s)	846, 975
CseI	GACGC	1 cut(s)	358
Csp6I	GTAC	2 cut(s)	569, 588
CspCI	CAANNNNNGTGG	2 cut(s)	210, 245
CviAII	CATG	6 cut(s)	664, 728, 890, 1070, 1093, 1100
CviQI	GTAC	2 cut(s)	569, 588
DdeI	CTNAG	3 cut(s)	62, 575, 821
DpnI	GATC	3 cut(s)	168, 1074, 1140
DpnII	GATC	3 cut(s)	166, 1072, 1138
Eam1104I	CTCTTC	4 cut(s)	192, 216, 736, 1047
EarI	CTCTTC	4 cut(s)	192, 216, 736, 1047
Eco130I	CCWWGG	1 cut(s)	1099
Eco31I	GGTCTC	1 cut(s)	278
Eco57I	CTGAAG	1 cut(s)	461
Eco81I	CCTNAGG	1 cut(s)	575
EcoO109I	RGGNCCY	1 cut(s)	975
EcoRII	CCWGG	1 cut(s)	365
EcoT14I	CCWWGG	1 cut(s)	1099
EcoT22I	ATGCAT	2 cut(s)	423, 636
ErhI	CCWWGG	1 cut(s)	1099
FaeI	CATG	6 cut(s)	667, 731, 893, 1073, 1096, 1103
FalI	AAGNNNNNCTT	2 cut(s)	483, 515
FaqI	GGGAC	1 cut(s)	565
FatI	CATG	6 cut(s)	663, 727, 889, 1069, 1092, 1099
FauI	CCCGC	1 cut(s)	1210
FauNDI	CATATG	1 cut(s)	1077
FbaI	TGATCA	2 cut(s)	166, 1072
Fnu4HI	GCNGC	3 cut(s)	353, 504, 805
FokI	GGATG	5 cut(s)	344, 382, 408, 1055, 1102
Fsp4HI	GCNGC	3 cut(s)	353, 504, 805
FspBI	CTAG	1 cut(s)	738
GlaI	GCGC	1 cut(s)	374
GluI	GCNGC	3 cut(s)	353, 504, 805
GsaI	CCCAGC	1 cut(s)	900
GsuI	CTGGAG	2 cut(s)	176, 717
HaeIII	GGCC	3 cut(s)	848, 977, 1104
HapII	CCGG	2 cut(s)	182, 1119
HgaI	GACGC	1 cut(s)	358
HhaI	GCGC	1 cut(s)	375
Hin1II	CATG	6 cut(s)	667, 731, 893, 1073, 1096, 1103
Hin6I	GCGC	1 cut(s)	373
HinP1I	GCGC	1 cut(s)	373
HindIII	AAGCTT	1 cut(s)	223
HinfI	GANTC	3 cut(s)	18, 886, 943
HpaII	CCGG	2 cut(s)	182, 1119
Hpy166II	GTNNAC	2 cut(s)	590, 998
Hpy188I	TCNGA	4 cut(s)	257, 327, 334, 1138
Hpy188III	TCNNGA	7 cut(s)	22, 164, 193, 284, 550, 639, 965
Hpy8I	GTNNAC	2 cut(s)	590, 998
HpyAV	CCTTC	1 cut(s)	598
HpyCH4III	ACNGT	4 cut(s)	761, 794, 930, 1189
HpyCH4V	TGCA	8 cut(s)	355, 421, 503, 634, 710, 818, 1021, 1192
HpyF10VI	GCNNNNNNNGC	3 cut(s)	79, 983, 1066
HpyF3I	CTNAG	3 cut(s)	62, 575, 821
Hsp92II	CATG	6 cut(s)	667, 731, 893, 1073, 1096, 1103
HspAI	GCGC	1 cut(s)	373
Ksp22I	TGATCA	2 cut(s)	166, 1072
Kzo9I	GATC	3 cut(s)	166, 1072, 1138
LguI	GCTCTTC	1 cut(s)	192
LmnI	GCTCC	3 cut(s)	9, 257, 893
Lsp1109I	GCAGC	3 cut(s)	339, 515, 791
LweI	GCATC	6 cut(s)	325, 360, 430, 621, 775, 805
MaeI	CTAG	1 cut(s)	738
MalI	GATC	3 cut(s)	168, 1074, 1140
MboI	GATC	3 cut(s)	166, 1072, 1138
MboII	GAAGA	8 cut(s)	179, 203, 283, 358, 503, 526, 753, 1064
MhlI	GDGCHC	2 cut(s)	262, 1176
MluCI	AATT	5 cut(s)	295, 850, 915, 955, 1165
MlyI	GAGTC	1 cut(s)	12
MnlI	CCTC	8 cut(s)	63, 314, 601, 737, 794, 816, 826, 1120
Mph1103I	ATGCAT	2 cut(s)	423, 636
MseI	TTAA	6 cut(s)	147, 564, 750, 918, 989, 1065
MslI	CAYNNNNRTG	2 cut(s)	267, 629
MspI	CCGG	2 cut(s)	182, 1119
MspR9I	CCNGG	1 cut(s)	367
Mva1269I	GAATGC	1 cut(s)	634
MvaI	CCWGG	1 cut(s)	367
MwoI	GCNNNNNNNGC	3 cut(s)	79, 983, 1066
NcoI	CCATGG	1 cut(s)	1099
NdeI	CATATG	1 cut(s)	1077
NdeII	GATC	3 cut(s)	166, 1072, 1138
NlaIII	CATG	6 cut(s)	667, 731, 893, 1073, 1096, 1103
NlaIV	GGNNCC	2 cut(s)	31, 976
NsiI	ATGCAT	2 cut(s)	423, 636
NspV	TTCGAA	1 cut(s)	907
PciSI	GCTCTTC	1 cut(s)	192
PctI	GAATGC	1 cut(s)	634
PfeI	GAWTC	2 cut(s)	886, 943
PflMI	CCANNNNNTGG	1 cut(s)	733
PkrI	GCNGC	3 cut(s)	354, 505, 806
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
PsiI	TTATAA	1 cut(s)	771
Psp6I	CCWGG	1 cut(s)	365
PspFI	CCCAGC	1 cut(s)	896
PspGI	CCWGG	1 cut(s)	365
PspN4I	GGNNCC	2 cut(s)	31, 976
PspPI	GGNCC	2 cut(s)	846, 975
PstI	CTGCAG	1 cut(s)	712
RsaI	GTAC	2 cut(s)	570, 589
RsaNI	GTAC	2 cut(s)	569, 588
RseI	CAYNNNNRTG	2 cut(s)	267, 629
SapI	GCTCTTC	1 cut(s)	192
SaqAI	TTAA	6 cut(s)	147, 564, 750, 918, 989, 1065
SatI	GCNGC	3 cut(s)	353, 504, 805
Sau3AI	GATC	3 cut(s)	166, 1072, 1138
Sau96I	GGNCC	2 cut(s)	846, 975
SchI	GAGTC	1 cut(s)	12
ScrFI	CCNGG	1 cut(s)	367
SduI	GDGCHC	2 cut(s)	262, 1176
SetI	ASST	6 cut(s)	63, 227, 283, 697, 735, 898
SfaNI	GCATC	6 cut(s)	325, 360, 430, 621, 775, 805
SfcI	CTRYAG	2 cut(s)	105, 708
SfuI	TTCGAA	1 cut(s)	907
SmiMI	CAYNNNNRTG	2 cut(s)	267, 629
SmlI	CTYRAG	2 cut(s)	20, 284
SmoI	CTYRAG	2 cut(s)	20, 284
Sse9I	AATT	5 cut(s)	295, 850, 915, 955, 1165
SsiI	CCGC	2 cut(s)	113, 1203
SspMI	CTAG	1 cut(s)	738
StyD4I	CCNGG	1 cut(s)	365
StyI	CCWWGG	1 cut(s)	1099
TaaI	ACNGT	4 cut(s)	761, 794, 930, 1189
TaqI	TCGA	6 cut(s)	446, 464, 617, 640, 907, 1125
TasI	AATT	5 cut(s)	295, 850, 915, 955, 1165
TatI	WGTACW	2 cut(s)	568, 587
TfiI	GAWTC	2 cut(s)	886, 943
Tru1I	TTAA	6 cut(s)	147, 564, 750, 918, 989, 1065
Tru9I	TTAA	6 cut(s)	147, 564, 750, 918, 989, 1065
TscAI	CASTG	4 cut(s)	825, 888, 1005, 1194
TseI	GCWGC	3 cut(s)	352, 503, 804
TspDTI	ATGAA	6 cut(s)	504, 613, 617, 680, 878, 935
TspGWI	ACGGA	1 cut(s)	414
TspRI	CASTG	4 cut(s)	825, 888, 1005, 1194
Van91I	CCANNNNNTGG	1 cut(s)	733
XapI	RAATTY	2 cut(s)	955, 1165
XspI	CTAG	1 cut(s)	738
Zsp2I	ATGCAT	2 cut(s)	423, 636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.