pycom11g02950

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Reverse (-)
2319088 .. 2320641
1554 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g02950.1

Sequence Viewer

Length: 1554 bp
ATGCTCCATTTGACGAGACTAAAGATATCCAATCAACTTACTGAAACTCCTCAAAAGCTAAATTTTTCTGTCATTAACGTCCTTAAATTATCCAGCCAAATACTTCTGTTGTCAGAATCCAGCATTGAAATTGATACAATCACCAGAATAATTAACAACCATCCTTACCCTGATCAACCACTTCAACCGACTCTTCTCCAGCACATCCCACCACAAGTTCTTTCCACCAGTTTTGTGGAGAATGTTCTTGGTCACCTTTTTGCAACCCATTCCAATGGTCTTAAAGCCCTTGAATTCTTCAATTATTCCCTCAGTCATTCCCAGTTATGTCCAAGCTCAGACGCTTTTGAAAAGATGCTGCACATCCTTACCAGGATGCGTTATTTTGATAGAGCGTGGGAGTTGATGGCAAAAATAAGCAGGACGCACCCTTCCTTGCTTACCCTTAAGTCAATGAGCATCATTCTGTCAAAAATAGCAAAATTCAAATTGTATGAAGATGTCCTTGAAGCATTTGAAAAATTGGAGAACGATATTTTTGCTGGGAGGAAGTTTGGTACTGATGAGTTCAATGTACTCCTCCGAGCATTTTGCACAGAAAGGCAGATGAAGGAGGCACGTTCAGTGTTCATGAAGATGTGTTCTCGCTTTCCACCCAACACCAAGACCATGAATATTTTGCTCCTAGGGTTCAAGGAATCAGGAGATATTACTGCAATAGAACTCTTTTACCATGAACTGGTTAAAAGAAGCTTTAAGCCAAATAGTATAACTTATAACATTAGAATTGATGCTTACTGTAAGAAAGGTTGCTTCGCTGATGGATTGAGACTTTTTGAAGGAATGGAACGGGAAAACTTGTCACCTACGTTGGAAACAATCACTACACTGATCCATGGAGCAGGGATTGTTCGAAATCCAATCAAGGCACGGCAGTTATTTGAAGAGATTCGCTTGAGAAACTTGCTTCCGGACACTGGCTCTTATAATGCTTTGATGAGTTCACTTATTAGATCAAGACATCTGAAGTCCGCGGTTGCCTTGATGGATGAGATGGAAGAGAATCATATTGAGCAGGACGATATGACATACCACACCATATTCTCGGGCTTGATGAGGACATCTGATATTGAAGGCGTTTCTAGGCTATATCACAAAATGGTTGATAGAAGTTTTGTGCCCAAAACACGAACGGTTGTGATGATAATAAAATTTTTCTGTGTAAACCATCAGCTTGATTCGGGTTTGCATTTGTGGCGATACCTTGTGGAGAAAGGATATTGTCCTCACAATCATGCATTGGACCTTCTGGTAACGGGATTGTGCTCCCGGGGTAGGGTAAACGAAGCATTTGAGTGCTCCACACAAATGGTGGAGAGGGGTAGACATATGAGCGAAGCATCGTTTCGGACATTGGAGAGCTTGCTGCTTCAGGAAGGTGAGATGGACAAGCTGAGGAAGCTGAAGCAGATGATAAAGAAATTGCAGAAGGTGTTGCCCCAAGTAAAAGGGCATACTATTGCAGATCCTGCACATTCAGACAGAGAGTTGTAG

Protein Analysis

518

Amino Acids

59.56

Weight (kDa)

8.88

Isoelectric Point (pI)

44.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 190 - 231 5.9e-07 PPR repeat family
PPR_2 PF13041 219 - 268 2.8e-10 PPR repeat family
PPR_1 PF12854 251 - 283 3.5e-06 PPR repeat
PPR_2 PF13041 254 - 300 5.6e-11 PPR repeat family
PPR PF01535 257 - 286 7.7e-06 PPR repeat
PPR_long PF17177 268 - 408 1.1e-06 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 324 - 372 3e-10 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 777, 987
AccB7I CCANNNNNTGG 1 cut(s) 739
AccI GTMKAC 1 cut(s) 1384
AccII CGCG 1 cut(s) 1034
AccIII TCCGGA 1 cut(s) 970
AciI CCGC 2 cut(s) 1032, 1034
AclWI GGATC 2 cut(s) 886, 1520
AcsI RAATTY 4 cut(s) 61, 293, 482, 1211
AcuI CTGAAG 3 cut(s) 1046, 1415, 1484
AfaI GTAC 2 cut(s) 559, 576
AfiI CCNNNNNNNGG 4 cut(s) 739, 977, 1335, 1336
AflII CTTAAG 1 cut(s) 446
AjnI CCWGG 1 cut(s) 371
AluBI AGCT 7 cut(s) 58, 336, 753, 1234, 1422, 1453, 1462
AluI AGCT 7 cut(s) 58, 336, 753, 1234, 1422, 1453, 1462
Alw21I GWGCWC 2 cut(s) 1328, 1361
Alw26I GTCTC 2 cut(s) 10, 823
AlwI GGATC 2 cut(s) 886, 1520
AlwNI CAGNNNCTG 1 cut(s) 1529
Ama87I CYCGRG 2 cut(s) 1105, 1329
Aor13HI TCCGGA 1 cut(s) 970
ApeKI GCWGC 2 cut(s) 358, 1426
ApoI RAATTY 4 cut(s) 61, 293, 482, 1211
Asp700I GAANNNNTTC 1 cut(s) 948
AspA2I CCTAGG 1 cut(s) 685
AspS9I GGNCC 1 cut(s) 1303
AsuC2I CCSGG 2 cut(s) 1330, 1331
AsuHPI GGTGA 4 cut(s) 133, 245, 855, 1451
AsuII TTCGAA 1 cut(s) 913
AvaI CYCGRG 2 cut(s) 1105, 1329
AvaII GGWCC 1 cut(s) 1303
AvrII CCTAGG 1 cut(s) 685
BaeGI GKGCMC 1 cut(s) 1182
Bbv12I GWGCWC 2 cut(s) 1328, 1361
BbvCI CCTCAGC 1 cut(s) 1454
BbvI GCAGC 2 cut(s) 345, 1413
BccI CCATC 7 cut(s) 168, 400, 815, 1039, 1048, 1236, 1438
BceAI ACGGC 1 cut(s) 947
BcgI CGANNNNNNTGC 4 cut(s) 521, 555, 573, 607
BciT130I CCWGG 1 cut(s) 373
BclI TGATCA 1 cut(s) 172
BcnI CCSGG 2 cut(s) 1330, 1331
BcoDI GTCTC 2 cut(s) 10, 823
BfaI CTAG 2 cut(s) 686, 1143
BfrI CTTAAG 1 cut(s) 446
BisI GCNGC 2 cut(s) 359, 1427
BlnI CCTAGG 1 cut(s) 685
BlsI GCNGC 2 cut(s) 360, 1428
Bme1390I CCNGG 3 cut(s) 373, 1330, 1331
Bme18I GGWCC 1 cut(s) 1303
BmeT110I CYCGRG 2 cut(s) 1105, 1329
BmgT120I GGNCC 1 cut(s) 1303
BmrFI CCNGG 3 cut(s) 373, 1330, 1331
BmrI ACTGGG 1 cut(s) 316
BmsI GCATC 5 cut(s) 345, 366, 468, 781, 1409
BmuI ACTGGG 1 cut(s) 316
BpmI CTGGAG 1 cut(s) 182
Bpu10I CCTNAGC 1 cut(s) 1454
Bpu14I TTCGAA 1 cut(s) 913
BpuEI CTTGAG 1 cut(s) 976
BpuMI CCSGG 2 cut(s) 1330, 1331
BsaJI CCNNGG 5 cut(s) 685, 895, 1032, 1329, 1330
BsaWI WCCGGW 1 cut(s) 970
BsaXI ACNNNNNCTCC 2 cut(s) 31, 61
Bsc4I CCNNNNNNNGG 4 cut(s) 739, 977, 1335, 1336
Bse1I ACTGG 4 cut(s) 228, 322, 744, 982
BseAI TCCGGA 1 cut(s) 970
BseBI CCWGG 1 cut(s) 373
BseDI CCNNGG 5 cut(s) 685, 895, 1032, 1329, 1330
BseGI GGATG 5 cut(s) 160, 204, 363, 381, 1054
BseLI CCNNNNNNNGG 4 cut(s) 739, 977, 1335, 1336
BseMII CTCAG 3 cut(s) 325, 351, 1445
BseNI ACTGG 4 cut(s) 228, 322, 744, 982
BseRI GAGGAG 2 cut(s) 39, 569
BseSI GKGCMC 1 cut(s) 1182
BseXI GCAGC 2 cut(s) 345, 1413
BseYI CCCAGC 1 cut(s) 542
BsgI GTGCAG 2 cut(s) 344, 1515
Bsh1236I CGCG 1 cut(s) 1034
BsiHKAI GWGCWC 2 cut(s) 1328, 1361
BsiHKCI CYCGRG 2 cut(s) 1105, 1329
BsiSI CCGG 2 cut(s) 971, 1330
BslI CCNNNNNNNGG 4 cut(s) 739, 977, 1335, 1336
BsmAI GTCTC 2 cut(s) 10, 823
BsoBI CYCGRG 2 cut(s) 1105, 1329
Bsp119I TTCGAA 1 cut(s) 913
Bsp1286I GDGCHC 3 cut(s) 1182, 1328, 1361
Bsp13I TCCGGA 1 cut(s) 970
Bsp143I GATC 4 cut(s) 172, 891, 1013, 1525
Bsp19I CCATGG 1 cut(s) 895
BspACI CCGC 2 cut(s) 1032, 1034
BspCNI CTCAG 3 cut(s) 324, 350, 1446
BspEI TCCGGA 1 cut(s) 970
BspFNI CGCG 1 cut(s) 1034
BspHI TCATGA 1 cut(s) 630
BspPI GGATC 2 cut(s) 886, 1520
BspT104I TTCGAA 1 cut(s) 913
BspTI CTTAAG 1 cut(s) 446
BsrI ACTGG 4 cut(s) 228, 322, 744, 982
BssECI CCNNGG 5 cut(s) 685, 895, 1032, 1329, 1330
BssMI GATC 4 cut(s) 172, 891, 1013, 1525
BssT1I CCWWGG 2 cut(s) 685, 895
Bst2UI CCWGG 1 cut(s) 373
Bst4CI ACNGT 2 cut(s) 800, 1195
Bst6I CTCTTC 3 cut(s) 198, 939, 1053
BstAFI CTTAAG 1 cut(s) 446
BstAPI GCANNNNNTGC 1 cut(s) 1529
BstBI TTCGAA 1 cut(s) 913
BstC8I GCNNGC 1 cut(s) 1424
BstDEI CTNAG 3 cut(s) 311, 337, 1454
BstDSI CCRYGG 2 cut(s) 895, 1032
BstEII GGTNACC 1 cut(s) 251
BstF5I GGATG 5 cut(s) 160, 204, 363, 381, 1054
BstFNI CGCG 1 cut(s) 1034
BstKTI GATC 4 cut(s) 175, 894, 1016, 1528
BstMAI GTCTC 2 cut(s) 10, 823
BstMBI GATC 4 cut(s) 172, 891, 1013, 1525
BstMWI GCNNNNNNNGC 3 cut(s) 1255, 1459, 1529
BstNI CCWGG 1 cut(s) 373
BstPI GGTNACC 1 cut(s) 251
BstSCI CCNGG 3 cut(s) 371, 1328, 1329
BstSLI GKGCMC 1 cut(s) 1182
BstUI CGCG 1 cut(s) 1034
BstV1I GCAGC 2 cut(s) 345, 1413
BstX2I RGATCY 1 cut(s) 1525
BstXI CCANNNNNNTGG 3 cut(s) 235, 275, 1369
BstYI RGATCY 1 cut(s) 1525
BtgI CCRYGG 2 cut(s) 895, 1032
BtsCI GGATG 5 cut(s) 160, 204, 363, 381, 1054
BtsIMutI CAGTG 3 cut(s) 630, 887, 975
Cac8I GCNNGC 1 cut(s) 1424
CaiI CAGNNNCTG 1 cut(s) 1529
CciI TCATGA 1 cut(s) 630
Cfr13I GGNCC 1 cut(s) 1303
Cfr42I CCGCGG 1 cut(s) 1035
Cfr9I CCCGGG 1 cut(s) 1329
CseI GACGC 2 cut(s) 350, 433
Csp6I GTAC 2 cut(s) 558, 575
CspCI CAANNNNNGTGG 2 cut(s) 214, 249
CviAII CATG 5 cut(s) 631, 670, 734, 896, 1295
CviQI GTAC 2 cut(s) 558, 575
DdeI CTNAG 3 cut(s) 311, 337, 1454
DpnI GATC 4 cut(s) 174, 893, 1015, 1527
DpnII GATC 4 cut(s) 172, 891, 1013, 1525
Eam1104I CTCTTC 3 cut(s) 198, 939, 1053
EarI CTCTTC 3 cut(s) 198, 939, 1053
Eco130I CCWWGG 2 cut(s) 685, 895
Eco32I GATATC 1 cut(s) 27
Eco47I GGWCC 1 cut(s) 1303
Eco57I CTGAAG 3 cut(s) 1046, 1415, 1484
Eco88I CYCGRG 2 cut(s) 1105, 1329
Eco91I GGTNACC 1 cut(s) 251
EcoO65I GGTNACC 1 cut(s) 251
EcoRI GAATTC 1 cut(s) 293
EcoRII CCWGG 1 cut(s) 371
EcoRV GATATC 1 cut(s) 27
EcoT14I CCWWGG 2 cut(s) 685, 895
EcoT22I ATGCAT 1 cut(s) 1300
ErhI CCWWGG 2 cut(s) 685, 895
FaeI CATG 5 cut(s) 634, 673, 737, 899, 1298
FalI AAGNNNNNCTT 2 cut(s) 489, 521
FatI CATG 5 cut(s) 630, 669, 733, 895, 1294
FauNDI CATATG 1 cut(s) 1389
FbaI TGATCA 1 cut(s) 172
FblI GTMKAC 1 cut(s) 1384
Fnu4HI GCNGC 2 cut(s) 359, 1427
FokI GGATG 5 cut(s) 147, 191, 350, 388, 1061
Fsp4HI GCNGC 2 cut(s) 359, 1427
FspBI CTAG 2 cut(s) 686, 1143
GluI GCNGC 2 cut(s) 359, 1427
GsaI CCCAGC 1 cut(s) 546
GsuI CTGGAG 1 cut(s) 182
HapII CCGG 2 cut(s) 971, 1330
HgaI GACGC 2 cut(s) 350, 433
Hin1II CATG 5 cut(s) 634, 673, 737, 899, 1298
HindIII AAGCTT 1 cut(s) 751
HinfI GANTC 6 cut(s) 116, 190, 698, 949, 1063, 1238
HpaII CCGG 2 cut(s) 971, 1330
HphI GGTGA 4 cut(s) 133, 245, 855, 1451
Hpy166II GTNNAC 4 cut(s) 1004, 1225, 1342, 1385
Hpy188I TCNGA 7 cut(s) 115, 340, 584, 1026, 1126, 1410, 1540
Hpy188III TCNNGA 5 cut(s) 631, 702, 971, 1017, 1433
Hpy8I GTNNAC 4 cut(s) 1004, 1225, 1342, 1385
HpyAV CCTTC 7 cut(s) 441, 604, 833, 1127, 1316, 1430, 1483
HpyCH4III ACNGT 2 cut(s) 800, 1195
HpyCH4IV ACGT 3 cut(s) 78, 619, 869
HpyCH4V TGCA 9 cut(s) 263, 361, 594, 716, 1249, 1298, 1486, 1523, 1532
HpyF10VI GCNNNNNNNGC 3 cut(s) 1255, 1459, 1529
HpyF3I CTNAG 3 cut(s) 311, 337, 1454
HpySE526I ACGT 3 cut(s) 78, 619, 869
Hsp92II CATG 5 cut(s) 634, 673, 737, 899, 1298
Kpn2I TCCGGA 1 cut(s) 970
Ksp22I TGATCA 1 cut(s) 172
KspI CCGCGG 1 cut(s) 1035
Kzo9I GATC 4 cut(s) 172, 891, 1013, 1525
LmnI GCTCC 5 cut(s) 9, 687, 899, 1331, 1364
Lsp1109I GCAGC 2 cut(s) 345, 1413
LweI GCATC 5 cut(s) 345, 366, 468, 781, 1409
MaeI CTAG 2 cut(s) 686, 1143
MaeII ACGT 3 cut(s) 78, 619, 869
MaeIII GTNAC 3 cut(s) 251, 861, 1312
MalI GATC 4 cut(s) 174, 893, 1015, 1527
MboI GATC 4 cut(s) 172, 891, 1013, 1525
MboII GAAGA 6 cut(s) 185, 289, 509, 646, 956, 1070
MflI RGATCY 1 cut(s) 1525
MhlI GDGCHC 3 cut(s) 1182, 1328, 1361
MlyI GAGTC 1 cut(s) 184
MmeI TCCRAC 1 cut(s) 852
MnlI CCTC 9 cut(s) 60, 320, 540, 590, 607, 1110, 1296, 1371, 1449
Mph1103I ATGCAT 1 cut(s) 1300
MroI TCCGGA 1 cut(s) 970
MroXI GAANNNNTTC 1 cut(s) 948
MseI TTAA 7 cut(s) 75, 84, 153, 282, 447, 744, 756
MslI CAYNNNNRTG 5 cut(s) 273, 635, 1293, 1354, 1367
MspA1I CMGCKG 1 cut(s) 1034
MspCI CTTAAG 1 cut(s) 446
MspI CCGG 2 cut(s) 971, 1330
MspR9I CCNGG 3 cut(s) 373, 1330, 1331
MvaI CCWGG 1 cut(s) 373
MvnI CGCG 1 cut(s) 1034
MwoI GCNNNNNNNGC 3 cut(s) 1255, 1459, 1529
NciI CCSGG 2 cut(s) 1330, 1331
NcoI CCATGG 1 cut(s) 895
NdeI CATATG 1 cut(s) 1389
NdeII GATC 4 cut(s) 172, 891, 1013, 1525
NlaIII CATG 5 cut(s) 634, 673, 737, 899, 1298
NmuCI GTSAC 2 cut(s) 251, 861
NsiI ATGCAT 1 cut(s) 1300
NspV TTCGAA 1 cut(s) 913
PagI TCATGA 1 cut(s) 630
PdmI GAANNNNTTC 1 cut(s) 948
PfeI GAWTC 5 cut(s) 116, 698, 949, 1063, 1238
PflMI CCANNNNNTGG 1 cut(s) 739
PkrI GCNGC 2 cut(s) 360, 1428
PleI GAGTC 1 cut(s) 184
PpsI GAGTC 1 cut(s) 184
PsiI TTATAA 2 cut(s) 777, 987
Psp6I CCWGG 1 cut(s) 371
PspEI GGTNACC 1 cut(s) 251
PspFI CCCAGC 1 cut(s) 542
PspGI CCWGG 1 cut(s) 371
PspPI GGNCC 1 cut(s) 1303
PstNI CAGNNNCTG 1 cut(s) 1529
PsuI RGATCY 1 cut(s) 1525
RsaI GTAC 2 cut(s) 559, 576
RsaNI GTAC 2 cut(s) 558, 575
RseI CAYNNNNRTG 5 cut(s) 273, 635, 1293, 1354, 1367
SacII CCGCGG 1 cut(s) 1035
SaqAI TTAA 7 cut(s) 75, 84, 153, 282, 447, 744, 756
SatI GCNGC 2 cut(s) 359, 1427
Sau3AI GATC 4 cut(s) 172, 891, 1013, 1525
Sau96I GGNCC 1 cut(s) 1303
SchI GAGTC 1 cut(s) 184
ScrFI CCNGG 3 cut(s) 373, 1330, 1331
SduI GDGCHC 3 cut(s) 1182, 1328, 1361
SfaNI GCATC 5 cut(s) 345, 366, 468, 781, 1409
Sfr303I CCGCGG 1 cut(s) 1035
SfuI TTCGAA 1 cut(s) 913
SgrBI CCGCGG 1 cut(s) 1035
SinI GGWCC 1 cut(s) 1303
SmaI CCCGGG 1 cut(s) 1331
SmiMI CAYNNNNRTG 5 cut(s) 273, 635, 1293, 1354, 1367
SmlI CTYRAG 2 cut(s) 446, 955
SmoI CTYRAG 2 cut(s) 446, 955
SsiI CCGC 2 cut(s) 1032, 1034
SspI AATATT 1 cut(s) 676
SspMI CTAG 2 cut(s) 686, 1143
StyD4I CCNGG 3 cut(s) 371, 1328, 1329
StyI CCWWGG 2 cut(s) 685, 895
TaaI ACNGT 2 cut(s) 800, 1195
TaiI ACGT 3 cut(s) 81, 622, 872
TaqI TCGA 1 cut(s) 913
TatI WGTACW 1 cut(s) 574
TfiI GAWTC 5 cut(s) 116, 698, 949, 1063, 1238
Tru1I TTAA 7 cut(s) 75, 84, 153, 282, 447, 744, 756
Tru9I TTAA 7 cut(s) 75, 84, 153, 282, 447, 744, 756
TscAI CASTG 3 cut(s) 630, 894, 982
TseFI GTSAC 2 cut(s) 251, 861
TseI GCWGC 2 cut(s) 358, 1426
Tsp45I GTSAC 2 cut(s) 251, 861
TspDTI ATGAA 6 cut(s) 510, 619, 623, 647, 686, 750
TspMI CCCGGG 1 cut(s) 1329
TspRI CASTG 3 cut(s) 630, 894, 982
Van91I CCANNNNNTGG 1 cut(s) 739
Vha464I CTTAAG 1 cut(s) 446
VpaK11BI GGWCC 1 cut(s) 1303
XapI RAATTY 4 cut(s) 61, 293, 482, 1211
XcmI CCANNNNNNNNNTGG 2 cut(s) 232, 1369
XmaI CCCGGG 1 cut(s) 1329
XmaJI CCTAGG 1 cut(s) 685
XmiI GTMKAC 1 cut(s) 1384
XmnI GAANNNNTTC 1 cut(s) 948
XspI CTAG 2 cut(s) 686, 1143
Zsp2I ATGCAT 1 cut(s) 1300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.