Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035610.1

Orthogroup ID

OG0009007

Physical Location & Seq

Genomic Coordinates Reverse (-)

1602 .. 3107

Gene Structure 1506 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035610.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1506 bp

atgctccttttggcaagactcaagagtggaaccaatcaatttccaatccctttaaagctaaagttttctcttgtttccgctgctagagtatccggccaatgtgtatcgtctgtagaaacggatgtcgacattgataggattactagaattattaacaaccatccatatcctgatcaaccacttcaaccagctcttctccagaatatcccaccacctcttctttctaccagctttgtggagaatgttcttggtcaccttttcggtgcccattccaatggtcttaaagctcttgagttcttcaattattccctccatcattcccagttacgtccaagttcagatgcttttgaaaagacgctgcacatccttaccaggatgcgctattttgataaagcgtgggagttaatggagaagataagtagtatgcatccttcgttgcttaccctgaagtcgatgagcatcatgctgtcaaaaattgcaaagttccaatcctatgaagatgtccttgtagcatttgaaaagatggagactgatatttttgttgggaggaagttcagtactgatgagtttaatgtactccttagagcattttgcacacaaagacaaatgaaggaggcacgctcagttttcataaagatgcattctcggttttcacccaacaccaagaccatgaatatcttgctcttggggttcaaggaagctggagatattgctgcagtagaactcttttaccatgagctttctagaagaggctttaagccaaacagtataacttataatattaggattgatgcttactgtaaaagaggttgctttgctgatggtttgaggctttttgaagaaatggaaagggccaaattgtcgcctgcattacagactatcactacactgattcatggagctggggttgttcggaatccaattaaggcacaacagttatttgatgagattcatttgagaaatttgcttcctgatactggggcttataatgctttaatgagttcacttattagatccaacgacgtgcagtcggcagttgccttgatggatgagatggaagagaagcatattaagcatgatcatatgacttatcacaccatgttttctggcctgatgagaacatcaggtattgaggggacttctgatctgtattacaaaatggttgatagaaattttgttcccaaaacacgaacagtggtgatgttaattaaatttttctgtgcaaatcatcagcttgatttgggtttgcacttgtggggatacctagtggagaaaggatattgccctcatggtcatgcattggatcttttgttaacagcattatgctcccgcagtagggcaatagaagcttttgagtgctcctcacaaatgttggagagagggagggatatgagtgaagcatcatttcggacatcagagacttttctgcttcaagctggtgagacagacaagctgagtaagcttaagcagatgagacagaaactgcataatctgctggcccattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

501

Amino Acids

57.15

Weight (kDa)

8.93

Isoelectric Point (pI)

43.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61360
fragaria_vesca	FvH4_7g04300 FvH4_7g04300 FvH4_7g04300 FvH4_7g04300
malus_domestica	MD03G1030500.v1.1 MD11G1035500.v1.1
prunus_persica	Prupe.2G028200_v2.0.a1 Prupe.2G028200_v2.0.a1 Prupe.2G028200_v2.0.a1 Prupe.2G028200_v2.0.a1
pyrus_communis	pycom11g02950
rosa_chinensis	RchiOBHm_Chr1g0329261
rosa_laevigata	RLG00000029906
rosa_multiflora	Rmu_sc0035610.1_g000001
rosa_roxburghii	Rroxscaffold_4G00321250
rosa_rugosa	Rorug01G0077600
rosa_samantha	Rh1AG096500 Rh1BG077200 Rh1CG093200 Rh1DG099900
rosa_wichuraiana	Rw1G007470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	777, 987
AccB1I	GGYRCC	1 cut(s)	263
AccI	GTMKAC	1 cut(s)	126
AciI	CCGC	2 cut(s)	78, 1330
AclWI	GGATC	2 cut(s)	1008, 1311
AcoI	YGGCCR	1 cut(s)	94
AcsI	RAATTY	3 cut(s)	961, 1171, 1211
AcuI	CTGAAG	1 cut(s)	467
AfaI	GTAC	2 cut(s)	559, 576
AfiI	CCNNNNNNNGG	3 cut(s)	977, 1335, 1336
AflII	CTTAAG	1 cut(s)	1463
AgsI	TTSAA	7 cut(s)	185, 301, 350, 518, 694, 839, 1433
AhdI	GACNNNNNGTC	1 cut(s)	1027
AjiI	CACGTC	1 cut(s)	1024
AjnI	CCWGG	1 cut(s)	371
Alw21I	GWGCWC	1 cut(s)	1361
Alw26I	GTCTC	4 cut(s)	521, 1412, 1436, 1468
AlwI	GGATC	2 cut(s)	1008, 1311
AlwNI	CAGNNNCTG	1 cut(s)	1483
AoxI	GGCC	4 cut(s)	94, 852, 1108, 1497
ApeKI	GCWGC	3 cut(s)	80, 358, 713
ApoI	RAATTY	3 cut(s)	961, 1171, 1211
AspLEI	GCGC	1 cut(s)	381
AspS9I	GGNCC	2 cut(s)	852, 1498
AsuHPI	GGTGA	4 cut(s)	245, 645, 1210, 1451
BaeGI	GKGCMC	1 cut(s)	268
BanI	GGYRCC	1 cut(s)	263
BarI	GAAGNNNNNNTAC	2 cut(s)	415, 447
Bbv12I	GWGCWC	1 cut(s)	1361
BbvI	GCAGC	3 cut(s)	67, 345, 700
BccI	CCATC	6 cut(s)	168, 321, 517, 815, 1039, 1048
BciT130I	CCWGG	1 cut(s)	373
BciVI	GTATCC	2 cut(s)	100, 1253
BclI	TGATCA	2 cut(s)	172, 1078
BcoDI	GTCTC	4 cut(s)	521, 1412, 1436, 1468
BfaI	CTAG	4 cut(s)	84, 144, 744, 1265
BfmI	CTRYAG	2 cut(s)	111, 714
BfrI	CTTAAG	1 cut(s)	1463
BfuI	GTATCC	2 cut(s)	100, 1253
BisI	GCNGC	3 cut(s)	81, 359, 714
BlsI	GCNGC	3 cut(s)	82, 360, 715
BmcAI	AGTACT	1 cut(s)	559
Bme1390I	CCNGG	1 cut(s)	373
BmeRI	GACNNNNNGTC	1 cut(s)	1027
BmgBI	CACGTC	1 cut(s)	1024
BmgT120I	GGNCC	2 cut(s)	852, 1498
BmiI	GGNNCC	2 cut(s)	31, 265
BmrFI	CCNGG	1 cut(s)	373
BmrI	ACTGGG	2 cut(s)	316, 987
BmsI	GCATC	7 cut(s)	331, 366, 436, 468, 627, 781, 1409
BmuI	ACTGGG	2 cut(s)	316, 987
BplI	GAGNNNNNCTC	4 cut(s)	605, 637, 1346, 1378
BpmI	CTGGAG	2 cut(s)	182, 723
BpuEI	CTTGAG	2 cut(s)	5, 311
BsaBI	GATNNNNATC	1 cut(s)	458
BsaXI	ACNNNNNCTCC	2 cut(s)	891, 921
Bsc4I	CCNNNNNNNGG	3 cut(s)	977, 1335, 1336
Bse1I	ACTGG	2 cut(s)	322, 982
Bse8I	GATNNNNATC	1 cut(s)	458
BseBI	CCWGG	1 cut(s)	373
BseGI	GGATG	6 cut(s)	127, 160, 363, 381, 427, 1054
BseJI	GATNNNNATC	1 cut(s)	458
BseLI	CCNNNNNNNGG	3 cut(s)	977, 1335, 1336
BseMII	CTCAG	2 cut(s)	636, 1445
BseNI	ACTGG	2 cut(s)	322, 982
BseRI	GAGGAG	1 cut(s)	1351
BseSI	GKGCMC	1 cut(s)	268
BseXI	GCAGC	3 cut(s)	67, 345, 700
BseYI	CCCAGC	1 cut(s)	902
BsgI	GTGCAG	2 cut(s)	344, 1046
BshFI	GGCC	4 cut(s)	96, 854, 1110, 1499
BshNI	GGYRCC	1 cut(s)	263
BsiHKAI	GWGCWC	1 cut(s)	1361
BsiSI	CCGG	1 cut(s)	93
BslFI	GGGAC	1 cut(s)	1150
BslI	CCNNNNNNNGG	3 cut(s)	977, 1335, 1336
BsmAI	GTCTC	4 cut(s)	521, 1412, 1436, 1468
BsmFI	GGGAC	1 cut(s)	1150
BsmI	GAATGC	1 cut(s)	640
BsnI	GGCC	4 cut(s)	96, 854, 1110, 1499
Bsp1286I	GDGCHC	2 cut(s)	268, 1361
Bsp143I	GATC	5 cut(s)	172, 1013, 1078, 1144, 1303
BspACI	CCGC	2 cut(s)	78, 1330
BspANI	GGCC	4 cut(s)	96, 854, 1110, 1499
BspCNI	CTCAG	2 cut(s)	635, 1446
BspLI	GGNNCC	2 cut(s)	31, 265
BspMAI	CTGCAG	1 cut(s)	718
BspPI	GGATC	2 cut(s)	1008, 1311
BspQI	GCTCTTC	1 cut(s)	198
BspT107I	GGYRCC	1 cut(s)	263
BspTI	CTTAAG	1 cut(s)	1463
BsrI	ACTGG	2 cut(s)	322, 982
BssMI	GATC	5 cut(s)	172, 1013, 1078, 1144, 1303
Bst2UI	CCWGG	1 cut(s)	373
Bst4CI	ACNGT	4 cut(s)	767, 800, 936, 1195
Bst6I	CTCTTC	4 cut(s)	198, 222, 742, 1053
BstAFI	CTTAAG	1 cut(s)	1463
BstAPI	GCANNNNNTGC	1 cut(s)	1492
BstC8I	GCNNGC	3 cut(s)	619, 867, 1497
BstDEI	CTNAG	3 cut(s)	581, 622, 1454
BstEII	GGTNACC	1 cut(s)	251
BstF5I	GGATG	6 cut(s)	127, 160, 363, 381, 427, 1054
BstHHI	GCGC	1 cut(s)	381
BstKTI	GATC	5 cut(s)	175, 1016, 1081, 1147, 1306
BstMAI	GTCTC	4 cut(s)	521, 1412, 1436, 1468
BstMBI	GATC	5 cut(s)	172, 1013, 1078, 1144, 1303
BstMWI	GCNNNNNNNGC	5 cut(s)	989, 1072, 1346, 1459, 1492
BstNI	CCWGG	1 cut(s)	373
BstPI	GGTNACC	1 cut(s)	251
BstSCI	CCNGG	1 cut(s)	371
BstSFI	CTRYAG	2 cut(s)	111, 714
BstSLI	GKGCMC	1 cut(s)	268
BstV1I	GCAGC	3 cut(s)	67, 345, 700
BstX2I	RGATCY	2 cut(s)	1013, 1303
BstXI	CCANNNNNNTGG	2 cut(s)	235, 275
BstYI	RGATCY	2 cut(s)	1013, 1303
BsuI	GTATCC	2 cut(s)	100, 1253
BsuRI	GGCC	4 cut(s)	96, 854, 1110, 1499
BtrI	CACGTC	1 cut(s)	1024
BtsCI	GGATG	6 cut(s)	127, 160, 363, 381, 427, 1054
BtsIMutI	CAGTG	2 cut(s)	887, 1200
Cac8I	GCNNGC	3 cut(s)	619, 867, 1497
CaiI	CAGNNNCTG	1 cut(s)	1483
CfoI	GCGC	1 cut(s)	381
Cfr13I	GGNCC	2 cut(s)	852, 1498
CseI	GACGC	1 cut(s)	364
Csp6I	GTAC	2 cut(s)	558, 575
CviAII	CATG	8 cut(s)	463, 670, 734, 896, 1076, 1099, 1289, 1295
CviQI	GTAC	2 cut(s)	558, 575
DdeI	CTNAG	3 cut(s)	581, 622, 1454
DpnI	GATC	5 cut(s)	174, 1015, 1080, 1146, 1305
DpnII	GATC	5 cut(s)	172, 1013, 1078, 1144, 1303
DraI	TTTAAA	1 cut(s)	54
DriI	GACNNNNNGTC	1 cut(s)	1027
EaeI	YGGCCR	1 cut(s)	94
Eam1104I	CTCTTC	4 cut(s)	198, 222, 742, 1053
Eam1105I	GACNNNNNGTC	1 cut(s)	1027
EarI	CTCTTC	4 cut(s)	198, 222, 742, 1053
Eco57I	CTGAAG	1 cut(s)	467
Eco91I	GGTNACC	1 cut(s)	251
EcoO65I	GGTNACC	1 cut(s)	251
EcoRII	CCWGG	1 cut(s)	371
EcoT22I	ATGCAT	3 cut(s)	429, 642, 1300
FaeI	CATG	8 cut(s)	466, 673, 737, 899, 1079, 1102, 1292, 1298
FalI	AAGNNNNNCTT	2 cut(s)	489, 521
FaqI	GGGAC	1 cut(s)	1150
FatI	CATG	8 cut(s)	462, 669, 733, 895, 1075, 1098, 1288, 1294
FauI	CCCGC	1 cut(s)	1337
FauNDI	CATATG	1 cut(s)	1083
FbaI	TGATCA	2 cut(s)	172, 1078
FblI	GTMKAC	1 cut(s)	126
Fnu4HI	GCNGC	3 cut(s)	81, 359, 714
FokI	GGATG	6 cut(s)	134, 147, 350, 388, 414, 1061
Fsp4HI	GCNGC	3 cut(s)	81, 359, 714
FspBI	CTAG	4 cut(s)	84, 144, 744, 1265
GlaI	GCGC	1 cut(s)	380
GluI	GCNGC	3 cut(s)	81, 359, 714
GsaI	CCCAGC	1 cut(s)	906
GsuI	CTGGAG	2 cut(s)	182, 723
HaeIII	GGCC	4 cut(s)	96, 854, 1110, 1499
HapII	CCGG	1 cut(s)	93
HgaI	GACGC	1 cut(s)	364
HhaI	GCGC	1 cut(s)	381
Hin1II	CATG	8 cut(s)	466, 673, 737, 899, 1079, 1102, 1292, 1298
Hin6I	GCGC	1 cut(s)	379
HinP1I	GCGC	1 cut(s)	379
HincII	GTYRAC	2 cut(s)	127, 1314
HindII	GTYRAC	2 cut(s)	127, 1314
HindIII	AAGCTT	2 cut(s)	1347, 1460
HinfI	GANTC	4 cut(s)	18, 892, 916, 949
HpaI	GTTAAC	1 cut(s)	1314
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	4 cut(s)	245, 645, 1210, 1451
Hpy166II	GTNNAC	3 cut(s)	127, 1004, 1314
Hpy188I	TCNGA	5 cut(s)	340, 915, 1144, 1410, 1417
Hpy188III	TCNNGA	6 cut(s)	22, 170, 199, 290, 744, 971
Hpy8I	GTNNAC	3 cut(s)	127, 1004, 1314
Hpy99I	CGWCG	1 cut(s)	1025
HpyAV	CCTTC	2 cut(s)	441, 604
HpyCH4III	ACNGT	4 cut(s)	767, 800, 936, 1195
HpyCH4IV	ACGT	2 cut(s)	328, 1023
HpyF10VI	GCNNNNNNNGC	5 cut(s)	989, 1072, 1346, 1459, 1492
HpyF3I	CTNAG	3 cut(s)	581, 622, 1454
HpySE526I	ACGT	2 cut(s)	328, 1023
Hsp92II	CATG	8 cut(s)	466, 673, 737, 899, 1079, 1102, 1292, 1298
HspAI	GCGC	1 cut(s)	379
Ksp22I	TGATCA	2 cut(s)	172, 1078
KspAI	GTTAAC	1 cut(s)	1314
Kzo9I	GATC	5 cut(s)	172, 1013, 1078, 1144, 1303
LguI	GCTCTTC	1 cut(s)	198
LmnI	GCTCC	4 cut(s)	9, 899, 1331, 1364
Lsp1109I	GCAGC	3 cut(s)	67, 345, 700
LweI	GCATC	7 cut(s)	331, 366, 436, 468, 627, 781, 1409
MaeI	CTAG	4 cut(s)	84, 144, 744, 1265
MaeII	ACGT	2 cut(s)	328, 1023
MaeIII	GTNAC	2 cut(s)	251, 324
MalI	GATC	5 cut(s)	174, 1015, 1080, 1146, 1305
MboI	GATC	5 cut(s)	172, 1013, 1078, 1144, 1303
MboII	GAAGA	8 cut(s)	185, 209, 289, 424, 509, 759, 851, 1070
MflI	RGATCY	2 cut(s)	1013, 1303
MhlI	GDGCHC	2 cut(s)	268, 1361
MlyI	GAGTC	1 cut(s)	12
MmeI	TCCRAC	2 cut(s)	1041, 1353
Mph1103I	ATGCAT	3 cut(s)	429, 642, 1300
MslI	CAYNNNNRTG	3 cut(s)	273, 635, 1293
MspA1I	CMGCKG	1 cut(s)	80
MspCI	CTTAAG	1 cut(s)	1463
MspI	CCGG	1 cut(s)	93
MspR9I	CCNGG	1 cut(s)	373
Mva1269I	GAATGC	1 cut(s)	640
MvaI	CCWGG	1 cut(s)	373
MwoI	GCNNNNNNNGC	5 cut(s)	989, 1072, 1346, 1459, 1492
NdeI	CATATG	1 cut(s)	1083
NdeII	GATC	5 cut(s)	172, 1013, 1078, 1144, 1303
NlaIII	CATG	8 cut(s)	466, 673, 737, 899, 1079, 1102, 1292, 1298
NlaIV	GGNNCC	2 cut(s)	31, 265
NmuCI	GTSAC	1 cut(s)	251
NsiI	ATGCAT	3 cut(s)	429, 642, 1300
PacI	TTAATTAA	1 cut(s)	1209
PciSI	GCTCTTC	1 cut(s)	198
PctI	GAATGC	1 cut(s)	640
PfeI	GAWTC	3 cut(s)	892, 916, 949
PkrI	GCNGC	3 cut(s)	82, 360, 715
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
PsiI	TTATAA	2 cut(s)	777, 987
Psp6I	CCWGG	1 cut(s)	371
PspEI	GGTNACC	1 cut(s)	251
PspFI	CCCAGC	1 cut(s)	902
PspGI	CCWGG	1 cut(s)	371
PspN4I	GGNNCC	2 cut(s)	31, 265
PspPI	GGNCC	2 cut(s)	852, 1498
PstI	CTGCAG	1 cut(s)	718
PstNI	CAGNNNCTG	1 cut(s)	1483
PsuI	RGATCY	2 cut(s)	1013, 1303
RsaI	GTAC	2 cut(s)	559, 576
RsaNI	GTAC	2 cut(s)	558, 575
RseI	CAYNNNNRTG	3 cut(s)	273, 635, 1293
SalI	GTCGAC	1 cut(s)	125
SapI	GCTCTTC	1 cut(s)	198
SatI	GCNGC	3 cut(s)	81, 359, 714
Sau3AI	GATC	5 cut(s)	172, 1013, 1078, 1144, 1303
Sau96I	GGNCC	2 cut(s)	852, 1498
ScaI	AGTACT	1 cut(s)	559
SchI	GAGTC	1 cut(s)	12
ScrFI	CCNGG	1 cut(s)	373
SduI	GDGCHC	2 cut(s)	268, 1361
SfaNI	GCATC	7 cut(s)	331, 366, 436, 468, 627, 781, 1409
SfcI	CTRYAG	2 cut(s)	111, 714
SmiMI	CAYNNNNRTG	3 cut(s)	273, 635, 1293
SmlI	CTYRAG	3 cut(s)	20, 290, 1463
SmoI	CTYRAG	3 cut(s)	20, 290, 1463
SsiI	CCGC	2 cut(s)	78, 1330
SspI	AATATT	1 cut(s)	781
SspMI	CTAG	4 cut(s)	84, 144, 744, 1265
StyD4I	CCNGG	1 cut(s)	371
TaaI	ACNGT	4 cut(s)	767, 800, 936, 1195
TaiI	ACGT	2 cut(s)	331, 1026
TaqI	TCGA	2 cut(s)	126, 452
TatI	WGTACW	2 cut(s)	557, 574
TfiI	GAWTC	3 cut(s)	892, 916, 949
TscAI	CASTG	2 cut(s)	894, 1200
TseFI	GTSAC	1 cut(s)	251
TseI	GCWGC	3 cut(s)	80, 358, 713
Tsp45I	GTSAC	1 cut(s)	251
TspDTI	ATGAA	6 cut(s)	510, 619, 623, 686, 884, 941
TspGWI	ACGGA	1 cut(s)	134
TspRI	CASTG	2 cut(s)	894, 1200
Vha464I	CTTAAG	1 cut(s)	1463
XapI	RAATTY	3 cut(s)	961, 1171, 1211
XbaI	TCTAGA	1 cut(s)	743
XmiI	GTMKAC	1 cut(s)	126
XspI	CTAG	4 cut(s)	84, 144, 744, 1265
ZrmI	AGTACT	1 cut(s)	559
Zsp2I	ATGCAT	3 cut(s)	429, 642, 1300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.