Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013316

Physical Location & Seq

Genomic Coordinates Forward (+)

22745514 .. 22747444

Gene Structure 1931 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G61470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGCATCATCTCTTTGTGCTTCTTCTGCCATCGCTGCCATTTCTTCTCCAAGTTTCTTGGGTGGTAAGAAACTGAGGCTGAAGAAGAAGTTGACTGTTCCAGCTGTGTCCAGGCCAGATGCGTCGGTGCGCGCCGTCGCAGCTGATCCAGATAGACCAATCTGGTTCCCGGGAAGCACTCCTCCAGAGTGGCTAGACGGTAGCCTCCCTGGTGACTTCGGATTTGATCCTCTTGGTCTTTCATCGGACCCGGACAGTCTAAAATGGAACGTACAAGCCGAGATAGTCCACTGCCGATGGGCTATGCTAGGAGCCGCCGGGATATTCATCCCAGAGTTCCTAACGAAGATCGGAATCCTCAACACTCCGTCATGGTACACGGCGGGAGAGCAAGAGTATTTCACGGACAAAACCACACTCTTTGTCGTTGAGCTCATTTTGATCGGATGGGCAGAAGGACGTAGATGGGCCGATATCATCAAGCCCGGTAGCGTCAACACTGACCCAGTCTTCCCAAACAACAAACTGACGGGCACAGACGTTGGTTACCCAGGTGGGTTATGGTTCGACCCGTTGGGTTGGGGATCCGGTAGCCCGGCTAAGCTCAAGGAGTTGAGGACCAAGGAGATCAAGAACGGAAGGTTGGCTATGTTGGCAGTGATGGGTGCTTGGTTCCAACACATCTACACTGGCACTGGTCCTATTGATAACCTTTTTGCACATCTTGCTGATCCTGGTCACGCCACAATCTTCGCTGCTTTCACACCCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009645 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0019904 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 map00196

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

257

Amino Acids

27.75

Weight (kDa)

6.91

Isoelectric Point (pI)

33.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	61 - 227	2.1e-53	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61470
fragaria_vesca	FvH4_4g23750 FvH4_4g23750
malus_domestica	MD13G1119100.v1.1 MD16G1119500.v1.1
prunus_persica	Prupe.1G225700_v2.0.a1
pyrus_communis	pycom13g10390 pycom16g10220
rosa_chinensis	RchiOBHm_Chr4g0430241
rosa_laevigata	RLG00000006992
rosa_multiflora	Rmu_sc0001089.1_g000008
rosa_roxburghii	Rroxscaffold_5G00372030
rosa_rugosa	Rorug04G0241800
rosa_samantha	Rh4AG298200 Rh4BG304800 Rh4CG320100 Rh4DG302100
rosa_wichuraiana	Rw4G025870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	132
AciI	CCGC	2 cut(s)	315, 383
AclWI	GGATC	5 cut(s)	140, 221, 579, 592, 725
AcuI	CTGAAG	1 cut(s)	101
AfaI	GTAC	2 cut(s)	273, 377
AjnI	CCWGG	4 cut(s)	110, 208, 550, 733
AjuI	GAANNNNNNNTTGG	2 cut(s)	626, 658
AleI	CACNNNNGTG	1 cut(s)	769
AluBI	AGCT	4 cut(s)	104, 143, 433, 604
AluI	AGCT	4 cut(s)	104, 143, 433, 604
Alw21I	GWGCWC	1 cut(s)	435
AlwI	GGATC	5 cut(s)	140, 221, 579, 592, 725
Ama87I	CYCGRG	1 cut(s)	169
AoxI	GGCC	2 cut(s)	113, 468
ApeKI	GCWGC	3 cut(s)	35, 140, 755
ArsI	GACNNNNNNTTYG	2 cut(s)	206, 238
AspLEI	GCGC	2 cut(s)	132, 134
AspS9I	GGNCC	4 cut(s)	247, 468, 618, 698
AsuC2I	CCSGG	6 cut(s)	170, 171, 251, 319, 486, 596
AsuHPI	GGTGA	1 cut(s)	224
AvaI	CYCGRG	1 cut(s)	169
AvaII	GGWCC	3 cut(s)	247, 618, 698
BaeGI	GKGCMC	1 cut(s)	536
BamHI	GGATCC	1 cut(s)	584
BanII	GRGCYC	1 cut(s)	435
BbsI	GAAGAC	1 cut(s)	502
Bbv12I	GWGCWC	1 cut(s)	435
BbvI	GCAGC	3 cut(s)	22, 152, 742
BccI	CCATC	5 cut(s)	38, 291, 441, 459, 655
BceAI	ACGGC	2 cut(s)	119, 396
BciT130I	CCWGG	4 cut(s)	112, 210, 552, 735
BcnI	CCSGG	6 cut(s)	170, 171, 251, 319, 486, 596
BfaI	CTAG	2 cut(s)	194, 308
BisI	GCNGC	4 cut(s)	36, 141, 315, 756
BlpI	GCTNAGC	1 cut(s)	600
BlsI	GCNGC	4 cut(s)	37, 142, 316, 757
Bme18I	GGWCC	3 cut(s)	247, 618, 698
BmeT110I	CYCGRG	1 cut(s)	169
BmgT120I	GGNCC	4 cut(s)	247, 468, 618, 698
BmiI	GGNNCC	5 cut(s)	167, 249, 313, 586, 674
BmrI	ACTGGG	1 cut(s)	500
BmsI	GCATC	2 cut(s)	14, 109
BmuI	ACTGGG	1 cut(s)	500
BpiI	GAAGAC	1 cut(s)	502
BpmI	CTGGAG	1 cut(s)	168
Bpu1102I	GCTNAGC	1 cut(s)	600
BpuEI	CTTGAG	1 cut(s)	590
BpuMI	CCSGG	6 cut(s)	170, 171, 251, 319, 486, 596
BsaBI	GATNNNNATC	2 cut(s)	326, 353
BsaJI	CCNNGG	4 cut(s)	169, 208, 550, 621
BsaWI	WCCGGW	1 cut(s)	587
Bse1I	ACTGG	3 cut(s)	506, 694, 700
Bse8I	GATNNNNATC	2 cut(s)	326, 353
BseBI	CCWGG	4 cut(s)	112, 210, 552, 735
BseDI	CCNNGG	4 cut(s)	169, 208, 550, 621
BseGI	GGATG	2 cut(s)	327, 452
BseJI	GATNNNNATC	2 cut(s)	326, 353
BseMII	CTCAG	1 cut(s)	65
BseNI	ACTGG	3 cut(s)	506, 694, 700
BsePI	GCGCGC	1 cut(s)	130
BseRI	GAGGAG	1 cut(s)	171
BseSI	GKGCMC	1 cut(s)	536
BseXI	GCAGC	3 cut(s)	22, 152, 742
Bsh1236I	CGCG	1 cut(s)	132
BshFI	GGCC	2 cut(s)	115, 470
BsiHKAI	GWGCWC	1 cut(s)	435
BsiHKCI	CYCGRG	1 cut(s)	169
BsiSI	CCGG	6 cut(s)	170, 251, 318, 486, 588, 596
BsnI	GGCC	2 cut(s)	115, 470
BsoBI	CYCGRG	1 cut(s)	169
Bsp1286I	GDGCHC	2 cut(s)	435, 536
Bsp143I	GATC	7 cut(s)	145, 226, 348, 441, 584, 627, 730
Bsp1720I	GCTNAGC	1 cut(s)	600
BspACI	CCGC	2 cut(s)	315, 383
BspANI	GGCC	2 cut(s)	115, 470
BspCNI	CTCAG	1 cut(s)	66
BspFNI	CGCG	1 cut(s)	132
BspLI	GGNNCC	5 cut(s)	167, 249, 313, 586, 674
BspPI	GGATC	5 cut(s)	140, 221, 579, 592, 725
BsrI	ACTGG	3 cut(s)	506, 694, 700
BssECI	CCNNGG	4 cut(s)	169, 208, 550, 621
BssHII	GCGCGC	1 cut(s)	130
BssMI	GATC	7 cut(s)	145, 226, 348, 441, 584, 627, 730
BssT1I	CCWWGG	1 cut(s)	621
Bst2UI	CCWGG	4 cut(s)	112, 210, 552, 735
Bst4CI	ACNGT	3 cut(s)	97, 200, 257
BstAPI	GCANNNNNTGC	1 cut(s)	725
BstC8I	GCNNGC	1 cut(s)	132
BstDEI	CTNAG	2 cut(s)	74, 600
BstEII	GGTNACC	1 cut(s)	545
BstF5I	GGATG	2 cut(s)	327, 452
BstFNI	CGCG	1 cut(s)	132
BstHHI	GCGC	2 cut(s)	132, 134
BstKTI	GATC	7 cut(s)	148, 229, 351, 444, 587, 630, 733
BstMBI	GATC	7 cut(s)	145, 226, 348, 441, 584, 627, 730
BstMWI	GCNNNNNNNGC	5 cut(s)	26, 35, 140, 653, 725
BstNI	CCWGG	4 cut(s)	112, 210, 552, 735
BstPI	GGTNACC	1 cut(s)	545
BstSLI	GKGCMC	1 cut(s)	536
BstUI	CGCG	1 cut(s)	132
BstV1I	GCAGC	3 cut(s)	22, 152, 742
BstV2I	GAAGAC	1 cut(s)	502
BstX2I	RGATCY	1 cut(s)	584
BstYI	RGATCY	1 cut(s)	584
BsuRI	GGCC	2 cut(s)	115, 470
BtgZI	GCGATG	1 cut(s)	16
BtsCI	GGATG	2 cut(s)	327, 452
BtsI	GCAGTG	2 cut(s)	289, 663
BtsIMutI	CAGTG	5 cut(s)	289, 498, 663, 687, 693
Cac8I	GCNNGC	1 cut(s)	132
CfoI	GCGC	2 cut(s)	132, 134
Cfr13I	GGNCC	4 cut(s)	247, 468, 618, 698
Cfr9I	CCCGGG	1 cut(s)	169
CseI	GACGC	2 cut(s)	111, 481
Csp6I	GTAC	2 cut(s)	272, 376
CspCI	CAANNNNNGTGG	2 cut(s)	403, 438
CviAII	CATG	1 cut(s)	372
CviQI	GTAC	2 cut(s)	272, 376
DdeI	CTNAG	2 cut(s)	74, 600
DpnI	GATC	7 cut(s)	147, 228, 350, 443, 586, 629, 732
DpnII	GATC	7 cut(s)	145, 226, 348, 441, 584, 627, 730
Ecl136II	GAGCTC	1 cut(s)	433
Eco130I	CCWWGG	1 cut(s)	621
Eco24I	GRGCYC	1 cut(s)	435
Eco32I	GATATC	1 cut(s)	475
Eco47I	GGWCC	3 cut(s)	247, 618, 698
Eco53kI	GAGCTC	1 cut(s)	433
Eco57I	CTGAAG	1 cut(s)	101
Eco88I	CYCGRG	1 cut(s)	169
Eco91I	GGTNACC	1 cut(s)	545
EcoICRI	GAGCTC	1 cut(s)	433
EcoO65I	GGTNACC	1 cut(s)	545
EcoRII	CCWGG	4 cut(s)	110, 208, 550, 733
EcoRV	GATATC	1 cut(s)	475
EcoT14I	CCWWGG	1 cut(s)	621
EcoT38I	GRGCYC	1 cut(s)	435
ErhI	CCWWGG	1 cut(s)	621
FaeI	CATG	1 cut(s)	375
FaiI	YATR	4 cut(s)	305, 373, 562, 650
FatI	CATG	1 cut(s)	371
FauI	CCCGC	1 cut(s)	376
Fnu4HI	GCNGC	4 cut(s)	36, 141, 315, 756
FokI	GGATG	2 cut(s)	314, 459
FriOI	GRGCYC	1 cut(s)	435
Fsp4HI	GCNGC	4 cut(s)	36, 141, 315, 756
FspBI	CTAG	2 cut(s)	194, 308
GlaI	GCGC	2 cut(s)	131, 133
GluI	GCNGC	4 cut(s)	36, 141, 315, 756
GsuI	CTGGAG	1 cut(s)	168
HaeIII	GGCC	2 cut(s)	115, 470
HapII	CCGG	6 cut(s)	170, 251, 318, 486, 588, 596
HgaI	GACGC	2 cut(s)	111, 481
HhaI	GCGC	2 cut(s)	132, 134
Hin1II	CATG	1 cut(s)	375
Hin6I	GCGC	2 cut(s)	130, 132
HinP1I	GCGC	2 cut(s)	130, 132
HincII	GTYRAC	2 cut(s)	93, 496
HindII	GTYRAC	2 cut(s)	93, 496
HinfI	GANTC	1 cut(s)	354
HpaII	CCGG	6 cut(s)	170, 251, 318, 486, 588, 596
HphI	GGTGA	1 cut(s)	224
Hpy166II	GTNNAC	4 cut(s)	93, 289, 378, 496
Hpy188I	TCNGA	4 cut(s)	221, 247, 353, 446
Hpy188III	TCNNGA	3 cut(s)	149, 185, 631
Hpy8I	GTNNAC	4 cut(s)	93, 289, 378, 496
Hpy99I	CGWCG	2 cut(s)	127, 140
HpyAV	CCTTC	2 cut(s)	449, 633
HpyCH4III	ACNGT	3 cut(s)	97, 200, 257
HpyCH4IV	ACGT	3 cut(s)	270, 460, 540
HpyCH4V	TGCA	1 cut(s)	719
HpyF10VI	GCNNNNNNNGC	5 cut(s)	26, 35, 140, 653, 725
HpyF3I	CTNAG	2 cut(s)	74, 600
HpySE526I	ACGT	3 cut(s)	270, 460, 540
Hsp92II	CATG	1 cut(s)	375
HspAI	GCGC	2 cut(s)	130, 132
Kzo9I	GATC	7 cut(s)	145, 226, 348, 441, 584, 627, 730
LmnI	GCTCC	1 cut(s)	311
Lsp1109I	GCAGC	3 cut(s)	22, 152, 742
LweI	GCATC	2 cut(s)	14, 109
MaeI	CTAG	2 cut(s)	194, 308
MaeII	ACGT	3 cut(s)	270, 460, 540
MaeIII	GTNAC	3 cut(s)	212, 545, 737
MalI	GATC	7 cut(s)	147, 228, 350, 443, 586, 629, 732
MboI	GATC	7 cut(s)	145, 226, 348, 441, 584, 627, 730
MboII	GAAGA	7 cut(s)	15, 36, 94, 97, 358, 502, 742
MflI	RGATCY	1 cut(s)	584
MhlI	GDGCHC	2 cut(s)	435, 536
MmeI	TCCRAC	1 cut(s)	700
MnlI	CCTC	6 cut(s)	69, 192, 215, 240, 368, 609
MslI	CAYNNNNRTG	1 cut(s)	769
MspA1I	CMGCKG	2 cut(s)	104, 143
MspI	CCGG	6 cut(s)	170, 251, 318, 486, 588, 596
MvaI	CCWGG	4 cut(s)	112, 210, 552, 735
MvnI	CGCG	1 cut(s)	132
MwoI	GCNNNNNNNGC	5 cut(s)	26, 35, 140, 653, 725
NciI	CCSGG	6 cut(s)	170, 171, 251, 319, 486, 596
NdeII	GATC	7 cut(s)	145, 226, 348, 441, 584, 627, 730
NlaIII	CATG	1 cut(s)	375
NlaIV	GGNNCC	5 cut(s)	167, 249, 313, 586, 674
NmeAIII	GCCGAG	1 cut(s)	304
NmuCI	GTSAC	2 cut(s)	212, 737
OliI	CACNNNNGTG	1 cut(s)	769
PauI	GCGCGC	1 cut(s)	130
PcsI	WCGNNNNNNNCGW	1 cut(s)	276
PfeI	GAWTC	1 cut(s)	354
PflFI	GACNNNGTC	1 cut(s)	506
PkrI	GCNGC	4 cut(s)	37, 142, 316, 757
Psp124BI	GAGCTC	1 cut(s)	435
Psp6I	CCWGG	4 cut(s)	110, 208, 550, 733
PspEI	GGTNACC	1 cut(s)	545
PspGI	CCWGG	4 cut(s)	110, 208, 550, 733
PspN4I	GGNNCC	5 cut(s)	167, 249, 313, 586, 674
PspPI	GGNCC	4 cut(s)	247, 468, 618, 698
PsuI	RGATCY	1 cut(s)	584
PsyI	GACNNNGTC	1 cut(s)	506
PteI	GCGCGC	1 cut(s)	130
PvuII	CAGCTG	2 cut(s)	104, 143
RsaI	GTAC	2 cut(s)	273, 377
RsaNI	GTAC	2 cut(s)	272, 376
RseI	CAYNNNNRTG	1 cut(s)	769
SacI	GAGCTC	1 cut(s)	435
SatI	GCNGC	4 cut(s)	36, 141, 315, 756
Sau3AI	GATC	7 cut(s)	145, 226, 348, 441, 584, 627, 730
Sau96I	GGNCC	4 cut(s)	247, 468, 618, 698
SduI	GDGCHC	2 cut(s)	435, 536
SfaNI	GCATC	2 cut(s)	14, 109
SinI	GGWCC	3 cut(s)	247, 618, 698
SmaI	CCCGGG	1 cut(s)	171
SmiMI	CAYNNNNRTG	1 cut(s)	769
SmlI	CTYRAG	1 cut(s)	605
SmoI	CTYRAG	1 cut(s)	605
SsiI	CCGC	2 cut(s)	315, 383
SspMI	CTAG	2 cut(s)	194, 308
SstI	GAGCTC	1 cut(s)	435
StyI	CCWWGG	1 cut(s)	621
TaaI	ACNGT	3 cut(s)	97, 200, 257
TaiI	ACGT	3 cut(s)	273, 463, 543
TaqI	TCGA	1 cut(s)	567
TauI	GCSGC	1 cut(s)	317
TfiI	GAWTC	1 cut(s)	354
TscAI	CASTG	5 cut(s)	296, 505, 663, 694, 700
TseFI	GTSAC	2 cut(s)	212, 737
TseI	GCWGC	3 cut(s)	35, 140, 755
Tsp45I	GTSAC	2 cut(s)	212, 737
TspDTI	ATGAA	2 cut(s)	231, 316
TspGWI	ACGGA	3 cut(s)	357, 419, 651
TspMI	CCCGGG	1 cut(s)	169
TspRI	CASTG	5 cut(s)	296, 505, 663, 694, 700
Tth111I	GACNNNGTC	1 cut(s)	506
VpaK11BI	GGWCC	3 cut(s)	247, 618, 698
XcmI	CCANNNNNNNNNTGG	1 cut(s)	558
XmaI	CCCGGG	1 cut(s)	169
XspI	CTAG	2 cut(s)	194, 308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.