Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0013316

Physical Location & Seq

Genomic Coordinates Forward (+)

6970824 .. 6971930

Gene Structure 1107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g10220.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGCCTCCGCTTGGGCTTCCTCTTCCGCCATTGCAACCGTCGCCGTATCTTCACGCTCCCAGAAGGGTGGGGCTACTTTGGCAGCGACCAAGGCTTCTTTCTTTGGTGGAAGGAAGCTGAGAGTGAGAAGCTTCACAGCATCCACCGGATCATCGTCATCTTTTACAGTACGTGCTGCTGCTGCTGACCCTGATAGACCTCTGTGGTTTCCGGGAAGCACCCCTCCACCATGGCTCGATGGAAGCCTCCCAGGAGACTTTGGCTTTGATCCGCTTGGTCTTTCATCTGACCCAGACAGCCTGAAATGGAACCAGCAAGCGGAGCTTGTACACTGCAGATGGGCAATGCTCGGCGCAGCCGGAATCTTCATCCCCGAATTCTTGACCAAAATTGGCATTCTAAACACCCCATCATGGTACACAGCCGGAGAGCAAGAGTACTTCACAGACACCACCACTCTCTTCGTCGTTGAACTTGTTAGGGCCGATTATGGATCGATCGGGTGGGCCGAGGGAAGGAGATGGGCGGACATCCTCAAGCCCGGGTCTGTTAACACAGACCCAATCTTCCCCAACAACAAGCTCACCGGGACAGATGTTGGGTACCCGGGAGGGCTCTGGTTTGACCCACTTGGATGGGGAAGCGGCTCGCCTGAGAAGATCAAGGAGTTGAGGACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 map00196

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

227

Amino Acids

24.21

Weight (kDa)

5.86

Isoelectric Point (pI)

39.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61470
fragaria_vesca	FvH4_4g23750 FvH4_4g23750
malus_domestica	MD13G1119100.v1.1 MD16G1119500.v1.1
prunus_persica	Prupe.1G225700_v2.0.a1
pyrus_communis	pycom13g10390 pycom16g10220
rosa_chinensis	RchiOBHm_Chr4g0430241
rosa_laevigata	RLG00000006992
rosa_multiflora	Rmu_sc0001089.1_g000008
rosa_roxburghii	Rroxscaffold_5G00372030
rosa_rugosa	Rorug04G0241800
rosa_samantha	Rh4AG298200 Rh4BG304800 Rh4CG320100 Rh4DG302100
rosa_wichuraiana	Rw4G025870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	603
AccB1I	GGYRCC	1 cut(s)	603
AciI	CCGC	6 cut(s)	9, 27, 272, 320, 527, 645
AclWI	GGATC	3 cut(s)	157, 263, 502
AcsI	RAATTY	1 cut(s)	377
AfaI	GTAC	5 cut(s)	171, 330, 419, 440, 605
AfiI	CCNNNNNNNGG	4 cut(s)	12, 319, 414, 516
AgsI	TTSAA	1 cut(s)	473
AjnI	CCWGG	1 cut(s)	250
AjuI	GAANNNNNNNTTGG	2 cut(s)	83, 115
AluBI	AGCT	4 cut(s)	118, 132, 325, 583
AluI	AGCT	4 cut(s)	118, 132, 325, 583
Alw26I	GTCTC	1 cut(s)	249
AlwI	GGATC	3 cut(s)	157, 263, 502
Ama87I	CYCGRG	2 cut(s)	542, 607
AoxI	GGCC	3 cut(s)	3, 483, 507
ApeKI	GCWGC	5 cut(s)	83, 176, 179, 182, 356
ApoI	RAATTY	1 cut(s)	377
ArsI	GACNNNNNNTTYG	2 cut(s)	248, 280
Asp718I	GGTACC	1 cut(s)	603
AspLEI	GCGC	1 cut(s)	356
AspS9I	GGNCC	2 cut(s)	483, 507
AsuC2I	CCSGG	6 cut(s)	213, 543, 544, 589, 608, 609
AsuHPI	GGTGA	1 cut(s)	577
AvaI	CYCGRG	2 cut(s)	542, 607
BanI	GGYRCC	1 cut(s)	603
BanII	GRGCYC	1 cut(s)	618
BbvI	GCAGC	5 cut(s)	95, 163, 166, 169, 368
BccI	CCATC	5 cut(s)	233, 333, 418, 516, 630
BceAI	ACGGC	1 cut(s)	29
BciT130I	CCWGG	1 cut(s)	252
BcnI	CCSGG	6 cut(s)	213, 543, 544, 589, 608, 609
BcoDI	GTCTC	1 cut(s)	249
BfmI	CTRYAG	1 cut(s)	334
BisI	GCNGC	6 cut(s)	84, 177, 180, 183, 357, 646
BlsI	GCNGC	6 cut(s)	85, 178, 181, 184, 358, 647
BmcAI	AGTACT	1 cut(s)	440
Bme1390I	CCNGG	7 cut(s)	213, 252, 543, 544, 589, 608, 609
BmeT110I	CYCGRG	2 cut(s)	542, 607
BmgT120I	GGNCC	2 cut(s)	483, 507
BmiI	GGNNCC	2 cut(s)	311, 605
BmrFI	CCNGG	7 cut(s)	213, 252, 543, 544, 589, 608, 609
BmsI	GCATC	1 cut(s)	149
BpuEI	CTTGAG	1 cut(s)	521
BpuMI	CCSGG	6 cut(s)	213, 543, 544, 589, 608, 609
Bsa29I	ATCGAT	1 cut(s)	497
BsaAI	YACGTR	1 cut(s)	173
BsaJI	CCNNGG	6 cut(s)	90, 230, 250, 510, 542, 607
BsaWI	WCCGGW	1 cut(s)	146
Bsc4I	CCNNNNNNNGG	4 cut(s)	12, 319, 414, 516
Bse3DI	GCAATG	2 cut(s)	30, 351
BseBI	CCWGG	1 cut(s)	252
BseCI	ATCGAT	1 cut(s)	497
BseDI	CCNNGG	6 cut(s)	90, 230, 250, 510, 542, 607
BseGI	GGATG	4 cut(s)	140, 369, 531, 641
BseLI	CCNNNNNNNGG	4 cut(s)	12, 319, 414, 516
BseMI	GCAATG	2 cut(s)	30, 351
BseMII	CTCAG	2 cut(s)	110, 645
BseXI	GCAGC	5 cut(s)	95, 163, 166, 169, 368
Bsh1285I	CGRYCG	1 cut(s)	501
BshFI	GGCC	3 cut(s)	5, 485, 509
BshNI	GGYRCC	1 cut(s)	603
BshVI	ATCGAT	1 cut(s)	497
BsiEI	CGRYCG	1 cut(s)	501
BsiHKCI	CYCGRG	2 cut(s)	542, 607
BsiSI	CCGG	7 cut(s)	147, 212, 360, 426, 543, 588, 608
BslFI	GGGAC	1 cut(s)	604
BslI	CCNNNNNNNGG	4 cut(s)	12, 319, 414, 516
BsmAI	GTCTC	1 cut(s)	249
BsmFI	GGGAC	1 cut(s)	604
BsmI	GAATGC	1 cut(s)	396
BsnI	GGCC	3 cut(s)	5, 485, 509
BsoBI	CYCGRG	2 cut(s)	542, 607
Bsp1286I	GDGCHC	1 cut(s)	618
Bsp1407I	TGTACA	1 cut(s)	328
Bsp143I	GATC	5 cut(s)	149, 268, 494, 498, 660
Bsp19I	CCATGG	1 cut(s)	230
BspACI	CCGC	6 cut(s)	9, 27, 272, 320, 527, 645
BspANI	GGCC	3 cut(s)	5, 485, 509
BspCNI	CTCAG	2 cut(s)	111, 646
BspDI	ATCGAT	1 cut(s)	497
BspLI	GGNNCC	2 cut(s)	311, 605
BspMAI	CTGCAG	1 cut(s)	338
BspPI	GGATC	3 cut(s)	157, 263, 502
BspT107I	GGYRCC	1 cut(s)	603
BsrDI	GCAATG	2 cut(s)	30, 351
BsrGI	TGTACA	1 cut(s)	328
BssECI	CCNNGG	6 cut(s)	90, 230, 250, 510, 542, 607
BssMI	GATC	5 cut(s)	149, 268, 494, 498, 660
BssT1I	CCWWGG	2 cut(s)	90, 230
Bst2UI	CCWGG	1 cut(s)	252
Bst4CI	ACNGT	2 cut(s)	40, 169
Bst6I	CTCTTC	2 cut(s)	28, 467
BstAUI	TGTACA	1 cut(s)	328
BstBAI	YACGTR	1 cut(s)	173
BstC8I	GCNNGC	2 cut(s)	318, 650
BstDEI	CTNAG	2 cut(s)	119, 654
BstDSI	CCRYGG	1 cut(s)	230
BstF5I	GGATG	4 cut(s)	140, 369, 531, 641
BstHHI	GCGC	1 cut(s)	356
BstKTI	GATC	5 cut(s)	152, 271, 497, 501, 663
BstMAI	GTCTC	1 cut(s)	249
BstMBI	GATC	5 cut(s)	149, 268, 494, 498, 660
BstMCI	CGRYCG	1 cut(s)	501
BstMWI	GCNNNNNNNGC	5 cut(s)	41, 80, 92, 182, 322
BstNI	CCWGG	1 cut(s)	252
BstSCI	CCNGG	7 cut(s)	211, 250, 541, 542, 587, 606, 607
BstSFI	CTRYAG	1 cut(s)	334
BstV1I	GCAGC	5 cut(s)	95, 163, 166, 169, 368
BstXI	CCANNNNNNTGG	2 cut(s)	68, 636
Bsu15I	ATCGAT	1 cut(s)	497
BsuRI	GGCC	3 cut(s)	5, 485, 509
BsuTUI	ATCGAT	1 cut(s)	497
BtgI	CCRYGG	1 cut(s)	230
BtsCI	GGATG	4 cut(s)	140, 369, 531, 641
BtsI	GCAGTG	1 cut(s)	331
BtsIMutI	CAGTG	1 cut(s)	331
Cac8I	GCNNGC	2 cut(s)	318, 650
CfoI	GCGC	1 cut(s)	356
Cfr13I	GGNCC	2 cut(s)	483, 507
Cfr9I	CCCGGG	2 cut(s)	542, 607
ClaI	ATCGAT	1 cut(s)	497
Csp6I	GTAC	5 cut(s)	170, 329, 418, 439, 604
CviAII	CATG	2 cut(s)	231, 414
CviQI	GTAC	5 cut(s)	170, 329, 418, 439, 604
DdeI	CTNAG	2 cut(s)	119, 654
DpnI	GATC	5 cut(s)	151, 270, 496, 500, 662
DpnII	GATC	5 cut(s)	149, 268, 494, 498, 660
Eam1104I	CTCTTC	2 cut(s)	28, 467
EarI	CTCTTC	2 cut(s)	28, 467
EciI	GGCGGA	2 cut(s)	16, 542
Eco130I	CCWWGG	2 cut(s)	90, 230
Eco24I	GRGCYC	1 cut(s)	618
Eco88I	CYCGRG	2 cut(s)	542, 607
EcoRI	GAATTC	1 cut(s)	377
EcoRII	CCWGG	1 cut(s)	250
EcoT14I	CCWWGG	2 cut(s)	90, 230
EcoT38I	GRGCYC	1 cut(s)	618
ErhI	CCWWGG	2 cut(s)	90, 230
FaeI	CATG	2 cut(s)	234, 417
FaiI	YATR	4 cut(s)	232, 415, 492, 679
FalI	AAGNNNNNCTT	2 cut(s)	309, 341
FaqI	GGGAC	1 cut(s)	604
FatI	CATG	2 cut(s)	230, 413
Fnu4HI	GCNGC	6 cut(s)	84, 177, 180, 183, 357, 646
FokI	GGATG	4 cut(s)	127, 356, 518, 648
FriOI	GRGCYC	1 cut(s)	618
Fsp4HI	GCNGC	6 cut(s)	84, 177, 180, 183, 357, 646
GlaI	GCGC	1 cut(s)	355
GluI	GCNGC	6 cut(s)	84, 177, 180, 183, 357, 646
HaeIII	GGCC	3 cut(s)	5, 485, 509
HapII	CCGG	7 cut(s)	147, 212, 360, 426, 543, 588, 608
HhaI	GCGC	1 cut(s)	356
Hin1II	CATG	2 cut(s)	234, 417
Hin6I	GCGC	1 cut(s)	354
HinP1I	GCGC	1 cut(s)	354
HincII	GTYRAC	1 cut(s)	553
HindII	GTYRAC	1 cut(s)	553
HindIII	AAGCTT	1 cut(s)	130
HinfI	GANTC	1 cut(s)	363
HpaI	GTTAAC	1 cut(s)	553
HpaII	CCGG	7 cut(s)	147, 212, 360, 426, 543, 588, 608
HphI	GGTGA	1 cut(s)	577
Hpy166II	GTNNAC	3 cut(s)	331, 420, 553
Hpy188I	TCNGA	1 cut(s)	289
Hpy188III	TCNNGA	1 cut(s)	382
Hpy8I	GTNNAC	3 cut(s)	331, 420, 553
Hpy99I	CGWCG	2 cut(s)	44, 470
HpyAV	CCTTC	3 cut(s)	58, 105, 510
HpyCH4III	ACNGT	2 cut(s)	40, 169
HpyCH4IV	ACGT	1 cut(s)	172
HpyCH4V	TGCA	2 cut(s)	35, 336
HpyF10VI	GCNNNNNNNGC	5 cut(s)	41, 80, 92, 182, 322
HpyF3I	CTNAG	2 cut(s)	119, 654
HpySE526I	ACGT	1 cut(s)	172
Hsp92II	CATG	2 cut(s)	234, 417
HspAI	GCGC	1 cut(s)	354
KpnI	GGTACC	1 cut(s)	607
KspAI	GTTAAC	1 cut(s)	553
Kzo9I	GATC	5 cut(s)	149, 268, 494, 498, 660
LmnI	GCTCC	2 cut(s)	62, 322
Lsp1109I	GCAGC	5 cut(s)	95, 163, 166, 169, 368
LweI	GCATC	1 cut(s)	149
MaeII	ACGT	1 cut(s)	172
MalI	GATC	5 cut(s)	151, 270, 496, 500, 662
MboI	GATC	5 cut(s)	149, 268, 494, 498, 660
MboII	GAAGA	6 cut(s)	15, 42, 358, 454, 559, 670
MhlI	GDGCHC	1 cut(s)	618
MluCI	AATT	2 cut(s)	377, 390
MnlI	CCTC	9 cut(s)	16, 31, 210, 234, 257, 505, 545, 605, 666
MseI	TTAA	1 cut(s)	552
MslI	CAYNNNNRTG	1 cut(s)	634
MspI	CCGG	7 cut(s)	147, 212, 360, 426, 543, 588, 608
MspR9I	CCNGG	7 cut(s)	213, 252, 543, 544, 589, 608, 609
Mva1269I	GAATGC	1 cut(s)	396
MvaI	CCWGG	1 cut(s)	252
MwoI	GCNNNNNNNGC	5 cut(s)	41, 80, 92, 182, 322
NciI	CCSGG	6 cut(s)	213, 543, 544, 589, 608, 609
NcoI	CCATGG	1 cut(s)	230
NdeII	GATC	5 cut(s)	149, 268, 494, 498, 660
NlaIII	CATG	2 cut(s)	234, 417
NlaIV	GGNNCC	2 cut(s)	311, 605
NmeAIII	GCCGAG	2 cut(s)	330, 535
PcsI	WCGNNNNNNNCGW	1 cut(s)	507
PctI	GAATGC	1 cut(s)	396
PfeI	GAWTC	1 cut(s)	363
PfoI	TCCNGGA	1 cut(s)	211
PkrI	GCNGC	6 cut(s)	85, 178, 181, 184, 358, 647
Ple19I	CGATCG	1 cut(s)	501
Ppu21I	YACGTR	1 cut(s)	173
Psp6I	CCWGG	1 cut(s)	250
PspGI	CCWGG	1 cut(s)	250
PspN4I	GGNNCC	2 cut(s)	311, 605
PspPI	GGNCC	2 cut(s)	483, 507
PstI	CTGCAG	1 cut(s)	338
PvuI	CGATCG	1 cut(s)	501
RsaI	GTAC	5 cut(s)	171, 330, 419, 440, 605
RsaNI	GTAC	5 cut(s)	170, 329, 418, 439, 604
RseI	CAYNNNNRTG	1 cut(s)	634
SaqAI	TTAA	1 cut(s)	552
SatI	GCNGC	6 cut(s)	84, 177, 180, 183, 357, 646
Sau3AI	GATC	5 cut(s)	149, 268, 494, 498, 660
Sau96I	GGNCC	2 cut(s)	483, 507
ScaI	AGTACT	1 cut(s)	440
ScrFI	CCNGG	7 cut(s)	213, 252, 543, 544, 589, 608, 609
SduI	GDGCHC	1 cut(s)	618
SetI	ASST	6 cut(s)	120, 134, 175, 202, 327, 585
SfaNI	GCATC	1 cut(s)	149
SfcI	CTRYAG	1 cut(s)	334
SmaI	CCCGGG	2 cut(s)	544, 609
SmiMI	CAYNNNNRTG	1 cut(s)	634
SmlI	CTYRAG	1 cut(s)	536
SmoI	CTYRAG	1 cut(s)	536
Sse9I	AATT	2 cut(s)	377, 390
SsiI	CCGC	6 cut(s)	9, 27, 272, 320, 527, 645
StyD4I	CCNGG	7 cut(s)	211, 250, 541, 542, 587, 606, 607
StyI	CCWWGG	2 cut(s)	90, 230
TaaI	ACNGT	2 cut(s)	40, 169
TaiI	ACGT	1 cut(s)	175
TaqI	TCGA	2 cut(s)	237, 497
TasI	AATT	2 cut(s)	377, 390
TatI	WGTACW	2 cut(s)	328, 438
TauI	GCSGC	1 cut(s)	648
TfiI	GAWTC	1 cut(s)	363
Tru1I	TTAA	1 cut(s)	552
Tru9I	TTAA	1 cut(s)	552
TscAI	CASTG	1 cut(s)	338
TseI	GCWGC	5 cut(s)	83, 176, 179, 182, 356
TspDTI	ATGAA	2 cut(s)	273, 358
TspMI	CCCGGG	2 cut(s)	542, 607
TspRI	CASTG	1 cut(s)	338
XapI	RAATTY	1 cut(s)	377
XmaI	CCCGGG	2 cut(s)	542, 607
ZrmI	AGTACT	1 cut(s)	440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.