Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0013316

Physical Location & Seq

Genomic Coordinates Reverse (-)

26130711 .. 26132576

Gene Structure 1866 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g23750.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGCTTCTGCTTGGGCTTCCTCTGCCATTGCAGCTGTATCTTCTCCTAGCTCGCAGAAAGCTGGGTCTGCTTTGGCAGCAACAAAGGCTTCGTTTTTTGGCGGGAGGAAGTTGAGAGTGAGAAACGTGGCAGCACCGAGTGGATCATCATCAACATCCTTCAGGGTATGTGCCGCTGCAGCTGACCCTGACAGACCCTTATGGTTCCCAGGCAGCACCCCACCTCCATGGCTCGATGGAAGCCTCCCAGGAGACTTTGGCTTTGATCCTCTTGGTCTTTCATCTGACCCTGACAGCCTAAAGTGGAACACGCAAGCTGAGATTGTACACTGCCGGTGGGCGATGTTGGGTGCCGCCGGGATCTTCATCCCGGAATTCTTGACAAAGATTGGCATCCTAAACACTCCTTCATGGTACACAGCAGGAGAACAAGAATACTTCACTGACACAACCACACTTTTCATTGTTGAGCTGATTTTCATCGGCTGGGCTGAGGGCAGGAGATGGGCTGACATCCTCAAGCCTGGGTCTGTTAACACTGACCCTATCTTCCCCAACAACAAGCTCACTGGCACAGACGTTGGATACCCAGGAGGGCTCTGGTTTGACCCACTTGGATGGGGAAGTGGCTCACCTGAGAAGATCAAGGAGTTGAGGACAAAGGAGATCAAGAATGGGAGACTGGCTATGTTGGCTGTGATGGGTGCTTGGTTTCAACACATTTACACCGGTACCGGACCAATTGACAACCTCTTTGCTCACCTTGCTGATCCTGGCCACGCCACTGTCTTCTCTGCTTTCAAGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 map00196

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

270

Amino Acids

28.78

Weight (kDa)

6.42

Isoelectric Point (pI)

32.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	74 - 240	2.3e-53	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0013316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61470
fragaria_vesca	FvH4_4g23750 FvH4_4g23750
malus_domestica	MD13G1119100.v1.1 MD16G1119500.v1.1
prunus_persica	Prupe.1G225700_v2.0.a1
pyrus_communis	pycom13g10390 pycom16g10220
rosa_chinensis	RchiOBHm_Chr4g0430241
rosa_laevigata	RLG00000006992
rosa_multiflora	Rmu_sc0001089.1_g000008
rosa_roxburghii	Rroxscaffold_5G00372030
rosa_rugosa	Rorug04G0241800
rosa_samantha	Rh4AG298200 Rh4BG304800 Rh4CG320100 Rh4DG302100
rosa_wichuraiana	Rw4G025870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	731
AccB1I	GGYRCC	2 cut(s)	350, 731
AciI	CCGC	3 cut(s)	102, 174, 354
AclWI	GGATC	4 cut(s)	151, 260, 368, 764
AcoI	YGGCCR	1 cut(s)	775
AcsI	RAATTY	1 cut(s)	374
AcuI	CTGAAG	1 cut(s)	145
AdeI	CACNNNGTG	1 cut(s)	140
AfaI	GTAC	3 cut(s)	327, 416, 733
AgeI	ACCGGT	1 cut(s)	728
AgsI	TTSAA	2 cut(s)	716, 802
AjnI	CCWGG	5 cut(s)	208, 247, 523, 589, 772
AluBI	AGCT	7 cut(s)	35, 51, 62, 182, 317, 472, 565
AluI	AGCT	7 cut(s)	35, 51, 62, 182, 317, 472, 565
Alw26I	GTCTC	2 cut(s)	246, 673
AlwI	GGATC	4 cut(s)	151, 260, 368, 764
AoxI	GGCC	1 cut(s)	775
ApeKI	GCWGC	6 cut(s)	32, 77, 131, 176, 179, 213
ApoI	RAATTY	1 cut(s)	374
ArsI	GACNNNNNNTTYG	4 cut(s)	245, 277, 737, 769
AsiGI	ACCGGT	1 cut(s)	728
Asp718I	GGTACC	1 cut(s)	731
AspS9I	GGNCC	1 cut(s)	737
AsuC2I	CCSGG	2 cut(s)	358, 371
AsuHPI	GGTGA	2 cut(s)	624, 752
AvaII	GGWCC	1 cut(s)	737
BaeI	ACNNNNGTAYC	2 cut(s)	715, 748
BalI	TGGCCA	1 cut(s)	777
BanI	GGYRCC	2 cut(s)	350, 731
BanII	GRGCYC	1 cut(s)	600
BbsI	GAAGAC	1 cut(s)	781
BbvCI	CCTCAGC	1 cut(s)	492
BbvI	GCAGC	6 cut(s)	44, 89, 143, 163, 191, 225
BccI	CCATC	4 cut(s)	230, 498, 612, 694
BciT130I	CCWGG	5 cut(s)	210, 249, 525, 591, 774
BciVI	GTATCC	1 cut(s)	578
BcnI	CCSGG	2 cut(s)	358, 371
BcoDI	GTCTC	2 cut(s)	246, 673
BfaI	CTAG	1 cut(s)	48
BfmI	CTRYAG	1 cut(s)	177
BfuI	GTATCC	1 cut(s)	578
BisI	GCNGC	8 cut(s)	33, 78, 132, 174, 177, 180, 214, 354
BlsI	GCNGC	8 cut(s)	34, 79, 133, 175, 178, 181, 215, 355
Bme1390I	CCNGG	7 cut(s)	210, 249, 358, 371, 525, 591, 774
Bme18I	GGWCC	1 cut(s)	737
BmgT120I	GGNCC	1 cut(s)	737
BmiI	GGNNCC	3 cut(s)	206, 352, 733
BmrFI	CCNGG	7 cut(s)	210, 249, 358, 371, 525, 591, 774
BmsI	GCATC	1 cut(s)	402
BpiI	GAAGAC	1 cut(s)	781
Bpu10I	CCTNAGC	1 cut(s)	492
BpuEI	CTTGAG	1 cut(s)	503
BpuMI	CCSGG	2 cut(s)	358, 371
BsaBI	GATNNNNATC	4 cut(s)	148, 365, 392, 479
BsaJI	CCNNGG	5 cut(s)	208, 227, 247, 524, 589
BsaWI	WCCGGW	2 cut(s)	728, 734
BsaXI	ACNNNNNCTCC	2 cut(s)	208, 238
Bse118I	RCCGGY	2 cut(s)	333, 728
Bse1I	ACTGG	2 cut(s)	574, 687
Bse3DI	GCAATG	1 cut(s)	27
Bse8I	GATNNNNATC	4 cut(s)	148, 365, 392, 479
BseBI	CCWGG	5 cut(s)	210, 249, 525, 591, 774
BseDI	CCNNGG	5 cut(s)	208, 227, 247, 524, 589
BseGI	GGATG	5 cut(s)	155, 366, 393, 513, 623
BseJI	GATNNNNATC	4 cut(s)	148, 365, 392, 479
BseMI	GCAATG	1 cut(s)	27
BseMII	CTCAG	3 cut(s)	309, 483, 627
BseNI	ACTGG	2 cut(s)	574, 687
BseXI	GCAGC	6 cut(s)	44, 89, 143, 163, 191, 225
BseYI	CCCAGC	2 cut(s)	62, 486
BshFI	GGCC	1 cut(s)	777
BshNI	GGYRCC	2 cut(s)	350, 731
BshTI	ACCGGT	1 cut(s)	728
BsiSI	CCGG	5 cut(s)	334, 357, 371, 729, 735
BsmAI	GTCTC	2 cut(s)	246, 673
BsnI	GGCC	1 cut(s)	777
Bsp1286I	GDGCHC	1 cut(s)	600
Bsp1407I	TGTACA	1 cut(s)	325
Bsp143I	GATC	6 cut(s)	143, 265, 360, 642, 666, 769
Bsp19I	CCATGG	1 cut(s)	227
BspACI	CCGC	3 cut(s)	102, 174, 354
BspANI	GGCC	1 cut(s)	777
BspCNI	CTCAG	3 cut(s)	310, 484, 628
BspLI	GGNNCC	3 cut(s)	206, 352, 733
BspMAI	CTGCAG	1 cut(s)	181
BspPI	GGATC	4 cut(s)	151, 260, 368, 764
BspT107I	GGYRCC	2 cut(s)	350, 731
BsrDI	GCAATG	1 cut(s)	27
BsrFI	RCCGGY	2 cut(s)	333, 728
BsrGI	TGTACA	1 cut(s)	325
BsrI	ACTGG	2 cut(s)	574, 687
BssAI	RCCGGY	2 cut(s)	333, 728
BssECI	CCNNGG	5 cut(s)	208, 227, 247, 524, 589
BssMI	GATC	6 cut(s)	143, 265, 360, 642, 666, 769
BssT1I	CCWWGG	1 cut(s)	227
Bst2UI	CCWGG	5 cut(s)	210, 249, 525, 591, 774
Bst4CI	ACNGT	1 cut(s)	787
BstAUI	TGTACA	1 cut(s)	325
BstC8I	GCNNGC	2 cut(s)	53, 315
BstDEI	CTNAG	3 cut(s)	318, 492, 636
BstDSI	CCRYGG	1 cut(s)	227
BstF5I	GGATG	5 cut(s)	155, 366, 393, 513, 623
BstKTI	GATC	6 cut(s)	146, 268, 363, 645, 669, 772
BstMAI	GTCTC	2 cut(s)	246, 673
BstMBI	GATC	6 cut(s)	143, 265, 360, 642, 666, 769
BstMWI	GCNNNNNNNGC	8 cut(s)	23, 32, 68, 77, 86, 179, 692, 764
BstNI	CCWGG	5 cut(s)	210, 249, 525, 591, 774
BstSCI	CCNGG	7 cut(s)	208, 247, 356, 369, 523, 589, 772
BstSFI	CTRYAG	1 cut(s)	177
BstV1I	GCAGC	6 cut(s)	44, 89, 143, 163, 191, 225
BstV2I	GAAGAC	1 cut(s)	781
BstX2I	RGATCY	1 cut(s)	360
BstXI	CCANNNNNNTGG	2 cut(s)	228, 618
BstYI	RGATCY	1 cut(s)	360
BsuI	GTATCC	1 cut(s)	578
BsuRI	GGCC	1 cut(s)	777
BtgI	CCRYGG	1 cut(s)	227
BtgZI	GCGATG	1 cut(s)	356
BtsCI	GGATG	5 cut(s)	155, 366, 393, 513, 623
BtsI	GCAGTG	1 cut(s)	328
BtsIMutI	CAGTG	5 cut(s)	328, 441, 537, 567, 783
Cac8I	GCNNGC	2 cut(s)	53, 315
Cfr10I	RCCGGY	2 cut(s)	333, 728
Cfr13I	GGNCC	1 cut(s)	737
Csp6I	GTAC	3 cut(s)	326, 415, 732
CspAI	ACCGGT	1 cut(s)	728
CviAII	CATG	2 cut(s)	228, 411
CviQI	GTAC	3 cut(s)	326, 415, 732
DdeI	CTNAG	3 cut(s)	318, 492, 636
DpnI	GATC	6 cut(s)	145, 267, 362, 644, 668, 771
DpnII	GATC	6 cut(s)	143, 265, 360, 642, 666, 769
DraIII	CACNNNGTG	1 cut(s)	140
EaeI	YGGCCR	1 cut(s)	775
Eco130I	CCWWGG	1 cut(s)	227
Eco24I	GRGCYC	1 cut(s)	600
Eco47I	GGWCC	1 cut(s)	737
Eco57I	CTGAAG	1 cut(s)	145
EcoRI	GAATTC	1 cut(s)	374
EcoRII	CCWGG	5 cut(s)	208, 247, 523, 589, 772
EcoT14I	CCWWGG	1 cut(s)	227
EcoT38I	GRGCYC	1 cut(s)	600
ErhI	CCWWGG	1 cut(s)	227
FaeI	CATG	2 cut(s)	231, 414
FaiI	YATR	5 cut(s)	169, 202, 229, 412, 689
FatI	CATG	2 cut(s)	227, 410
FauI	CCCGC	1 cut(s)	95
Fnu4HI	GCNGC	8 cut(s)	33, 78, 132, 174, 177, 180, 214, 354
FokI	GGATG	5 cut(s)	142, 353, 380, 500, 630
FriOI	GRGCYC	1 cut(s)	600
Fsp4HI	GCNGC	8 cut(s)	33, 78, 132, 174, 177, 180, 214, 354
FspBI	CTAG	1 cut(s)	48
GluI	GCNGC	8 cut(s)	33, 78, 132, 174, 177, 180, 214, 354
GsaI	CCCAGC	2 cut(s)	66, 490
HaeIII	GGCC	1 cut(s)	777
HapII	CCGG	5 cut(s)	334, 357, 371, 729, 735
Hin1II	CATG	2 cut(s)	231, 414
HincII	GTYRAC	1 cut(s)	535
HindII	GTYRAC	1 cut(s)	535
HpaI	GTTAAC	1 cut(s)	535
HpaII	CCGG	5 cut(s)	334, 357, 371, 729, 735
HphI	GGTGA	2 cut(s)	624, 752
Hpy166II	GTNNAC	3 cut(s)	328, 417, 535
Hpy188I	TCNGA	1 cut(s)	286
Hpy188III	TCNNGA	2 cut(s)	379, 670
Hpy8I	GTNNAC	3 cut(s)	328, 417, 535
HpyAV	CCTTC	2 cut(s)	169, 417
HpyCH4III	ACNGT	1 cut(s)	787
HpyCH4IV	ACGT	2 cut(s)	126, 579
HpyCH4V	TGCA	2 cut(s)	32, 179
HpyF10VI	GCNNNNNNNGC	8 cut(s)	23, 32, 68, 77, 86, 179, 692, 764
HpyF3I	CTNAG	3 cut(s)	318, 492, 636
HpySE526I	ACGT	2 cut(s)	126, 579
Hsp92II	CATG	2 cut(s)	231, 414
KpnI	GGTACC	1 cut(s)	735
KspAI	GTTAAC	1 cut(s)	535
Kzo9I	GATC	6 cut(s)	143, 265, 360, 642, 666, 769
Lsp1109I	GCAGC	6 cut(s)	44, 89, 143, 163, 191, 225
LweI	GCATC	1 cut(s)	402
MaeI	CTAG	1 cut(s)	48
MaeII	ACGT	2 cut(s)	126, 579
MalI	GATC	6 cut(s)	145, 267, 362, 644, 668, 771
MboI	GATC	6 cut(s)	143, 265, 360, 642, 666, 769
MboII	GAAGA	5 cut(s)	33, 355, 541, 652, 781
MfeI	CAATTG	1 cut(s)	741
MflI	RGATCY	1 cut(s)	360
MhlI	GDGCHC	1 cut(s)	600
MlsI	TGGCCA	1 cut(s)	777
MluCI	AATT	2 cut(s)	374, 741
MluNI	TGGCCA	1 cut(s)	777
MmeI	TCCRAC	1 cut(s)	562
Mox20I	TGGCCA	1 cut(s)	777
MscI	TGGCCA	1 cut(s)	777
MseI	TTAA	1 cut(s)	534
MslI	CAYNNNNRTG	2 cut(s)	226, 616
Msp20I	TGGCCA	1 cut(s)	777
MspA1I	CMGCKG	3 cut(s)	35, 176, 182
MspI	CCGG	5 cut(s)	334, 357, 371, 729, 735
MspR9I	CCNGG	7 cut(s)	210, 249, 358, 371, 525, 591, 774
MunI	CAATTG	1 cut(s)	741
MvaI	CCWGG	5 cut(s)	210, 249, 525, 591, 774
MwoI	GCNNNNNNNGC	8 cut(s)	23, 32, 68, 77, 86, 179, 692, 764
NciI	CCSGG	2 cut(s)	358, 371
NcoI	CCATGG	1 cut(s)	227
NdeII	GATC	6 cut(s)	143, 265, 360, 642, 666, 769
NlaIII	CATG	2 cut(s)	231, 414
NlaIV	GGNNCC	3 cut(s)	206, 352, 733
PfoI	TCCNGGA	1 cut(s)	369
PinAI	ACCGGT	1 cut(s)	728
PkrI	GCNGC	8 cut(s)	34, 79, 133, 175, 178, 181, 215, 355
Psp6I	CCWGG	5 cut(s)	208, 247, 523, 589, 772
PspFI	CCCAGC	2 cut(s)	62, 486
PspGI	CCWGG	5 cut(s)	208, 247, 523, 589, 772
PspN4I	GGNNCC	3 cut(s)	206, 352, 733
PspPI	GGNCC	1 cut(s)	737
PstI	CTGCAG	1 cut(s)	181
PsuI	RGATCY	1 cut(s)	360
PvuII	CAGCTG	2 cut(s)	35, 182
RsaI	GTAC	3 cut(s)	327, 416, 733
RsaNI	GTAC	3 cut(s)	326, 415, 732
RseI	CAYNNNNRTG	2 cut(s)	226, 616
SaqAI	TTAA	1 cut(s)	534
SatI	GCNGC	8 cut(s)	33, 78, 132, 174, 177, 180, 214, 354
Sau3AI	GATC	6 cut(s)	143, 265, 360, 642, 666, 769
Sau96I	GGNCC	1 cut(s)	737
ScrFI	CCNGG	7 cut(s)	210, 249, 358, 371, 525, 591, 774
SduI	GDGCHC	1 cut(s)	600
SfaNI	GCATC	1 cut(s)	402
SfcI	CTRYAG	1 cut(s)	177
SinI	GGWCC	1 cut(s)	737
SmiMI	CAYNNNNRTG	2 cut(s)	226, 616
SmlI	CTYRAG	1 cut(s)	518
SmoI	CTYRAG	1 cut(s)	518
Sse9I	AATT	2 cut(s)	374, 741
SsiI	CCGC	3 cut(s)	102, 174, 354
SspMI	CTAG	1 cut(s)	48
StyD4I	CCNGG	7 cut(s)	208, 247, 356, 369, 523, 589, 772
StyI	CCWWGG	1 cut(s)	227
TaaI	ACNGT	1 cut(s)	787
TaiI	ACGT	2 cut(s)	129, 582
TaqI	TCGA	1 cut(s)	234
TasI	AATT	2 cut(s)	374, 741
TatI	WGTACW	1 cut(s)	325
TauI	GCSGC	2 cut(s)	176, 356
Tru1I	TTAA	1 cut(s)	534
Tru9I	TTAA	1 cut(s)	534
TscAI	CASTG	5 cut(s)	335, 448, 544, 574, 790
TseI	GCWGC	6 cut(s)	32, 77, 131, 176, 179, 213
TspDTI	ATGAA	5 cut(s)	270, 355, 399, 451, 469
TspRI	CASTG	5 cut(s)	335, 448, 544, 574, 790
VpaK11BI	GGWCC	1 cut(s)	737
XapI	RAATTY	1 cut(s)	374
XcmI	CCANNNNNNNNNTGG	1 cut(s)	597
XspI	CTAG	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.