RLG00000006992

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0013316
Physical Location & Seq
Forward (+)
12523422 .. 12524626
1205 bp
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UTR
Exon/CDS
Intron
RLM00000006992

Sequence Viewer

Length: 828 bp
ATGGCTTCTGCTTGGGCTTCATCTGCCATTGCAGCTGTGTCTTCTCCCAGCTCGCAGAAAGCTGGGTCTGCTTTGGCAGCAACAAAGGCTTCGTTTTTTGGCCGGAGGAAGCTGAGAGTGAGAAACGTGGCAGCACCGAGTGGATCATCATCAACTTCTTTTAGAGTATTTGCTACTGCTGCTGACCCTGACAGACCCCTATGGTTCCCGGGAAGCACCCCTCCTCCATGGCTAGACGGGAGCCTTCCAGGAGACTTTGGCTTTGATCCGCTTGGTCTTTCATCTGACCCTGACAGCCTAAAGTGGAACACACAAGCCGAGCTTGTACACTGCCGGTGGGCGATGTTGGGCGCCGCCGGGATCTTCATCCCAGAATTCTTGACAAAGATTGGCATCCTAAACACTCCTTCATGGTACACAGCAGGAGAACAGGAGTACTTCACTGACACCACCACCCTTTTCATTGTTGAGCTGATTTTCATCGGGTGGGCCGAGGGGAGGAGATGGGCTGACATCCTCAAGCCTGGCTCTGTTAACACCGACCCAATCTTCCCTAACAACAAGCTCACCGGGACAGACGTAGGATACCCAGGCGGGCTCTGGTTCGACCCACTTGGATGGGGAAGTGGCTCACCCGAGAAGATCAAGGAGCTGAGGACAAAGGAGATCAAGAATGGGAGATTGGCTATGTTGGCTGTGATGGGTGCATGGTTTCAACACATCTACACCGGTACCGGCCCCATTGACAACCTCTTTGCTCACCTTGCTGATCCCGGCCACGCCACTGTTTTTGCAGTAAGTACTGCTAAGTACACTAGAATTAGATGA

Protein Analysis

276

Amino Acids

29.71

Weight (kDa)

8.65

Isoelectric Point (pI)

33.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chloroa_b-bind PF00504 74 - 240 2.6e-53 Chlorophyll A-B binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61470
fragaria_vesca FvH4_4g23750 FvH4_4g23750
malus_domestica MD13G1119100.v1.1 MD16G1119500.v1.1
prunus_persica Prupe.1G225700_v2.0.a1
pyrus_communis pycom13g10390 pycom16g10220
rosa_chinensis RchiOBHm_Chr4g0430241
rosa_laevigata RLG00000006992
rosa_multiflora Rmu_sc0001089.1_g000008
rosa_roxburghii Rroxscaffold_5G00372030
rosa_rugosa Rorug04G0241800
rosa_samantha Rh4AG298200 Rh4BG304800 Rh4CG320100 Rh4DG302100
rosa_wichuraiana Rw4G025870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 731
AccB1I GGYRCC 2 cut(s) 350, 731
AciI CCGC 3 cut(s) 269, 354, 594
AclWI GGATC 4 cut(s) 151, 260, 368, 764
AcoI YGGCCR 2 cut(s) 100, 775
AcsI RAATTY 1 cut(s) 374
AcyI GRCGYC 1 cut(s) 351
AdeI CACNNNGTG 1 cut(s) 140
AfaI GTAC 6 cut(s) 327, 416, 437, 733, 802, 812
AfiI CCNNNNNNNGG 1 cut(s) 498
AgeI ACCGGT 1 cut(s) 728
AgsI TTSAA 1 cut(s) 716
AjnI CCWGG 3 cut(s) 247, 523, 589
AjuI GAANNNNNNNTTGG 2 cut(s) 665, 697
AluBI AGCT 8 cut(s) 35, 51, 62, 112, 322, 472, 565, 652
AluI AGCT 8 cut(s) 35, 51, 62, 112, 322, 472, 565, 652
Alw26I GTCTC 1 cut(s) 246
AlwI GGATC 4 cut(s) 151, 260, 368, 764
Ama87I CYCGRG 2 cut(s) 208, 635
AoxI GGCC 4 cut(s) 100, 489, 736, 775
ApeKI GCWGC 4 cut(s) 32, 77, 131, 179
ApoI RAATTY 1 cut(s) 374
ArsI GACNNNNNNTTYG 4 cut(s) 245, 277, 737, 769
AsiGI ACCGGT 1 cut(s) 728
Asp718I GGTACC 1 cut(s) 731
AspLEI GCGC 1 cut(s) 353
AspS9I GGNCC 2 cut(s) 489, 737
AsuC2I CCSGG 5 cut(s) 209, 210, 358, 571, 774
AsuHPI GGTGA 3 cut(s) 559, 624, 752
AvaI CYCGRG 2 cut(s) 208, 635
BaeI ACNNNNGTAYC 2 cut(s) 715, 748
BanI GGYRCC 2 cut(s) 350, 731
BanII GRGCYC 1 cut(s) 600
BbsI GAAGAC 1 cut(s) 33
BbvCI CCTCAGC 1 cut(s) 653
BbvI GCAGC 4 cut(s) 44, 89, 143, 166
BccI CCATC 3 cut(s) 498, 612, 694
BciT130I CCWGG 3 cut(s) 249, 525, 591
BciVI GTATCC 1 cut(s) 578
BcnI CCSGG 5 cut(s) 209, 210, 358, 571, 774
BcoDI GTCTC 1 cut(s) 246
BfaI CTAG 2 cut(s) 233, 816
BfoI RGCGCY 1 cut(s) 354
BfuI GTATCC 1 cut(s) 578
BisI GCNGC 5 cut(s) 33, 78, 132, 180, 354
BlsI GCNGC 5 cut(s) 34, 79, 133, 181, 355
BmcAI AGTACT 2 cut(s) 437, 802
Bme1390I CCNGG 8 cut(s) 209, 210, 249, 358, 525, 571, 591, 774
BmeT110I CYCGRG 2 cut(s) 208, 635
BmgT120I GGNCC 2 cut(s) 489, 737
BmiI GGNNCC 5 cut(s) 206, 242, 352, 733, 739
BmrFI CCNGG 8 cut(s) 209, 210, 249, 358, 525, 571, 591, 774
BmsI GCATC 1 cut(s) 402
BpiI GAAGAC 1 cut(s) 33
Bpu10I CCTNAGC 1 cut(s) 653
BpuEI CTTGAG 1 cut(s) 503
BpuMI CCSGG 5 cut(s) 209, 210, 358, 571, 774
BsaBI GATNNNNATC 4 cut(s) 148, 365, 392, 479
BsaHI GRCGYC 1 cut(s) 351
BsaJI CCNNGG 4 cut(s) 208, 227, 492, 589
BsaWI WCCGGW 1 cut(s) 728
BsaXI ACNNNNNCTCC 2 cut(s) 208, 238
Bsc4I CCNNNNNNNGG 1 cut(s) 498
Bse118I RCCGGY 3 cut(s) 333, 728, 734
Bse3DI GCAATG 1 cut(s) 27
Bse8I GATNNNNATC 4 cut(s) 148, 365, 392, 479
BseBI CCWGG 3 cut(s) 249, 525, 591
BseDI CCNNGG 4 cut(s) 208, 227, 492, 589
BseGI GGATG 4 cut(s) 366, 393, 513, 623
BseJI GATNNNNATC 4 cut(s) 148, 365, 392, 479
BseLI CCNNNNNNNGG 1 cut(s) 498
BseMI GCAATG 1 cut(s) 27
BseMII CTCAG 2 cut(s) 104, 644
BseRI GAGGAG 2 cut(s) 213, 514
BseXI GCAGC 4 cut(s) 44, 89, 143, 166
BseYI CCCAGC 2 cut(s) 47, 62
BshFI GGCC 4 cut(s) 102, 491, 738, 777
BshNI GGYRCC 2 cut(s) 350, 731
BshTI ACCGGT 1 cut(s) 728
BsiHKCI CYCGRG 2 cut(s) 208, 635
BsiSI CCGG 8 cut(s) 103, 209, 334, 357, 570, 729, 735, 774
BslFI GGGAC 1 cut(s) 586
BslI CCNNNNNNNGG 1 cut(s) 498
BsmAI GTCTC 1 cut(s) 246
BsmFI GGGAC 1 cut(s) 586
BsnI GGCC 4 cut(s) 102, 491, 738, 777
BsoBI CYCGRG 2 cut(s) 208, 635
Bsp1286I GDGCHC 1 cut(s) 600
Bsp1407I TGTACA 1 cut(s) 325
Bsp143I GATC 6 cut(s) 143, 265, 360, 642, 666, 769
Bsp19I CCATGG 1 cut(s) 227
BspACI CCGC 3 cut(s) 269, 354, 594
BspANI GGCC 4 cut(s) 102, 491, 738, 777
BspCNI CTCAG 2 cut(s) 105, 645
BspLI GGNNCC 5 cut(s) 206, 242, 352, 733, 739
BspPI GGATC 4 cut(s) 151, 260, 368, 764
BspT107I GGYRCC 2 cut(s) 350, 731
BsrDI GCAATG 1 cut(s) 27
BsrFI RCCGGY 3 cut(s) 333, 728, 734
BsrGI TGTACA 1 cut(s) 325
BssAI RCCGGY 3 cut(s) 333, 728, 734
BssECI CCNNGG 4 cut(s) 208, 227, 492, 589
BssMI GATC 6 cut(s) 143, 265, 360, 642, 666, 769
BssNI GRCGYC 1 cut(s) 351
BssT1I CCWWGG 1 cut(s) 227
Bst2UI CCWGG 3 cut(s) 249, 525, 591
Bst4CI ACNGT 1 cut(s) 787
BstACI GRCGYC 1 cut(s) 351
BstAUI TGTACA 1 cut(s) 325
BstC8I GCNNGC 2 cut(s) 53, 596
BstDEI CTNAG 3 cut(s) 113, 653, 807
BstDSI CCRYGG 1 cut(s) 227
BstF5I GGATG 4 cut(s) 366, 393, 513, 623
BstH2I RGCGCY 1 cut(s) 354
BstHHI GCGC 1 cut(s) 353
BstKTI GATC 6 cut(s) 146, 268, 363, 645, 669, 772
BstMAI GTCTC 1 cut(s) 246
BstMBI GATC 6 cut(s) 143, 265, 360, 642, 666, 769
BstMWI GCNNNNNNNGC 8 cut(s) 23, 32, 68, 77, 86, 179, 692, 764
BstNI CCWGG 3 cut(s) 249, 525, 591
BstSCI CCNGG 8 cut(s) 207, 208, 247, 356, 523, 569, 589, 772
BstV1I GCAGC 4 cut(s) 44, 89, 143, 166
BstV2I GAAGAC 1 cut(s) 33
BstX2I RGATCY 1 cut(s) 360
BstXI CCANNNNNNTGG 1 cut(s) 618
BstYI RGATCY 1 cut(s) 360
BsuI GTATCC 1 cut(s) 578
BsuRI GGCC 4 cut(s) 102, 491, 738, 777
BtgI CCRYGG 1 cut(s) 227
BtgZI GCGATG 1 cut(s) 356
BtsCI GGATG 4 cut(s) 366, 393, 513, 623
BtsI GCAGTG 1 cut(s) 328
BtsIMutI CAGTG 3 cut(s) 328, 441, 783
Cac8I GCNNGC 2 cut(s) 53, 596
CfoI GCGC 1 cut(s) 353
Cfr10I RCCGGY 3 cut(s) 333, 728, 734
Cfr13I GGNCC 2 cut(s) 489, 737
Cfr9I CCCGGG 1 cut(s) 208
Csp6I GTAC 6 cut(s) 326, 415, 436, 732, 801, 811
CspAI ACCGGT 1 cut(s) 728
CspCI CAANNNNNGTGG 2 cut(s) 772, 807
CviAII CATG 3 cut(s) 228, 411, 708
CviQI GTAC 6 cut(s) 326, 415, 436, 732, 801, 811
DdeI CTNAG 3 cut(s) 113, 653, 807
DinI GGCGCC 1 cut(s) 352
DpnI GATC 6 cut(s) 145, 267, 362, 644, 668, 771
DpnII GATC 6 cut(s) 143, 265, 360, 642, 666, 769
DraIII CACNNNGTG 1 cut(s) 140
EaeI YGGCCR 2 cut(s) 100, 775
Eco130I CCWWGG 1 cut(s) 227
Eco24I GRGCYC 1 cut(s) 600
Eco88I CYCGRG 2 cut(s) 208, 635
EcoRI GAATTC 1 cut(s) 374
EcoRII CCWGG 3 cut(s) 247, 523, 589
EcoT14I CCWWGG 1 cut(s) 227
EcoT38I GRGCYC 1 cut(s) 600
EgeI GGCGCC 1 cut(s) 352
EheI GGCGCC 1 cut(s) 352
ErhI CCWWGG 1 cut(s) 227
FaeI CATG 3 cut(s) 231, 414, 711
FaiI YATR 5 cut(s) 202, 229, 412, 689, 709
FalI AAGNNNNNCTT 2 cut(s) 306, 338
FaqI GGGAC 1 cut(s) 586
FatI CATG 3 cut(s) 227, 410, 707
FauI CCCGC 1 cut(s) 587
Fnu4HI GCNGC 5 cut(s) 33, 78, 132, 180, 354
FokI GGATG 4 cut(s) 353, 380, 500, 630
FriOI GRGCYC 1 cut(s) 600
Fsp4HI GCNGC 5 cut(s) 33, 78, 132, 180, 354
FspBI CTAG 2 cut(s) 233, 816
GlaI GCGC 1 cut(s) 352
GluI GCNGC 5 cut(s) 33, 78, 132, 180, 354
GsaI CCCAGC 2 cut(s) 51, 66
HaeII RGCGCY 1 cut(s) 354
HaeIII GGCC 4 cut(s) 102, 491, 738, 777
HapII CCGG 8 cut(s) 103, 209, 334, 357, 570, 729, 735, 774
HhaI GCGC 1 cut(s) 353
Hin1I GRCGYC 1 cut(s) 351
Hin1II CATG 3 cut(s) 231, 414, 711
Hin6I GCGC 1 cut(s) 351
HinP1I GCGC 1 cut(s) 351
HincII GTYRAC 1 cut(s) 535
HindII GTYRAC 1 cut(s) 535
HpaI GTTAAC 1 cut(s) 535
HpaII CCGG 8 cut(s) 103, 209, 334, 357, 570, 729, 735, 774
HphI GGTGA 3 cut(s) 559, 624, 752
Hpy166II GTNNAC 4 cut(s) 328, 417, 535, 813
Hpy188I TCNGA 1 cut(s) 286
Hpy188III TCNNGA 2 cut(s) 379, 670
Hpy8I GTNNAC 4 cut(s) 328, 417, 535, 813
HpyAV CCTTC 2 cut(s) 254, 417
HpyCH4III ACNGT 1 cut(s) 787
HpyCH4IV ACGT 2 cut(s) 126, 579
HpyCH4V TGCA 3 cut(s) 32, 707, 794
HpyF10VI GCNNNNNNNGC 8 cut(s) 23, 32, 68, 77, 86, 179, 692, 764
HpyF3I CTNAG 3 cut(s) 113, 653, 807
HpySE526I ACGT 2 cut(s) 126, 579
Hsp92I GRCGYC 1 cut(s) 351
Hsp92II CATG 3 cut(s) 231, 414, 711
HspAI GCGC 1 cut(s) 351
KasI GGCGCC 1 cut(s) 350
KpnI GGTACC 1 cut(s) 735
KspAI GTTAAC 1 cut(s) 535
Kzo9I GATC 6 cut(s) 143, 265, 360, 642, 666, 769
LmnI GCTCC 2 cut(s) 240, 649
Lsp1109I GCAGC 4 cut(s) 44, 89, 143, 166
LweI GCATC 1 cut(s) 402
MaeI CTAG 2 cut(s) 233, 816
MaeII ACGT 2 cut(s) 126, 579
MalI GATC 6 cut(s) 145, 267, 362, 644, 668, 771
MboI GATC 6 cut(s) 143, 265, 360, 642, 666, 769
MboII GAAGA 4 cut(s) 33, 355, 541, 652
MflI RGATCY 1 cut(s) 360
MhlI GDGCHC 1 cut(s) 600
MluCI AATT 2 cut(s) 374, 819
Mly113I GGCGCC 1 cut(s) 351
MnlI CCTC 8 cut(s) 99, 231, 234, 487, 492, 527, 648, 761
MseI TTAA 1 cut(s) 534
MslI CAYNNNNRTG 1 cut(s) 616
MspA1I CMGCKG 1 cut(s) 35
MspI CCGG 8 cut(s) 103, 209, 334, 357, 570, 729, 735, 774
MspR9I CCNGG 8 cut(s) 209, 210, 249, 358, 525, 571, 591, 774
MvaI CCWGG 3 cut(s) 249, 525, 591
MwoI GCNNNNNNNGC 8 cut(s) 23, 32, 68, 77, 86, 179, 692, 764
NarI GGCGCC 1 cut(s) 351
NciI CCSGG 5 cut(s) 209, 210, 358, 571, 774
NcoI CCATGG 1 cut(s) 227
NdeII GATC 6 cut(s) 143, 265, 360, 642, 666, 769
NlaIII CATG 3 cut(s) 231, 414, 711
NlaIV GGNNCC 5 cut(s) 206, 242, 352, 733, 739
NmeAIII GCCGAG 2 cut(s) 343, 517
PcsI WCGNNNNNNNCGW 1 cut(s) 489
PfoI TCCNGGA 1 cut(s) 247
PinAI ACCGGT 1 cut(s) 728
PkrI GCNGC 5 cut(s) 34, 79, 133, 181, 355
PluTI GGCGCC 1 cut(s) 354
Psp6I CCWGG 3 cut(s) 247, 523, 589
PspFI CCCAGC 2 cut(s) 47, 62
PspGI CCWGG 3 cut(s) 247, 523, 589
PspN4I GGNNCC 5 cut(s) 206, 242, 352, 733, 739
PspPI GGNCC 2 cut(s) 489, 737
PsuI RGATCY 1 cut(s) 360
PvuII CAGCTG 1 cut(s) 35
RsaI GTAC 6 cut(s) 327, 416, 437, 733, 802, 812
RsaNI GTAC 6 cut(s) 326, 415, 436, 732, 801, 811
RseI CAYNNNNRTG 1 cut(s) 616
SaqAI TTAA 1 cut(s) 534
SatI GCNGC 5 cut(s) 33, 78, 132, 180, 354
Sau3AI GATC 6 cut(s) 143, 265, 360, 642, 666, 769
Sau96I GGNCC 2 cut(s) 489, 737
ScaI AGTACT 2 cut(s) 437, 802
ScrFI CCNGG 8 cut(s) 209, 210, 249, 358, 525, 571, 591, 774
SduI GDGCHC 1 cut(s) 600
SfaNI GCATC 1 cut(s) 402
SfoI GGCGCC 1 cut(s) 352
SmaI CCCGGG 1 cut(s) 210
SmiMI CAYNNNNRTG 1 cut(s) 616
SmlI CTYRAG 1 cut(s) 518
SmoI CTYRAG 1 cut(s) 518
Sse9I AATT 2 cut(s) 374, 819
SsiI CCGC 3 cut(s) 269, 354, 594
SspDI GGCGCC 1 cut(s) 350
SspMI CTAG 2 cut(s) 233, 816
StyD4I CCNGG 8 cut(s) 207, 208, 247, 356, 523, 569, 589, 772
StyI CCWWGG 1 cut(s) 227
TaaI ACNGT 1 cut(s) 787
TaiI ACGT 2 cut(s) 129, 582
TaqI TCGA 1 cut(s) 606
TasI AATT 2 cut(s) 374, 819
TatI WGTACW 4 cut(s) 325, 435, 800, 810
TauI GCSGC 1 cut(s) 356
Tru1I TTAA 1 cut(s) 534
Tru9I TTAA 1 cut(s) 534
TscAI CASTG 3 cut(s) 335, 448, 790
TseI GCWGC 4 cut(s) 32, 77, 131, 179
TspDTI ATGAA 6 cut(s) 9, 270, 355, 399, 451, 469
TspMI CCCGGG 1 cut(s) 208
TspRI CASTG 3 cut(s) 335, 448, 790
XapI RAATTY 1 cut(s) 374
XcmI CCANNNNNNNNNTGG 1 cut(s) 597
XmaI CCCGGG 1 cut(s) 208
XspI CTAG 2 cut(s) 233, 816
ZrmI AGTACT 2 cut(s) 437, 802
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.