MD13G1119100.v1.1

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0013316
Physical Location & Seq
Forward (+)
8734032 .. 8736151
2120 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1119100.v1.1.491

Sequence Viewer

Length: 1011 bp
ATGAAGGGCCCACTCTCAGATTCTGCATGCCACATGGCACCCCAAAAGCCAATCGGACACCACTCTCCTATCCTACAAGATAAGCCCCTTCAATTCTTTACATTAACTCATCTGCGTCTCTCTCCCCAAACACTCCAAACCCCATACAGTTTCACAGATCAAATAAGCAACAAAGTTTGGTCGAAGCCTCGAAAAATGGCCTCCGCCTGGGCTACCTCTTCCGCCATTGCAGCCGTCGCTGTATCGTCGCGCTCCCAGAAGGGTGGGTCTTCTTTGGCGGCAACTAAGGCTTCTTTCTTTGGTGGGAGGAAGCTGAGAGTGAGAAGCTTCACAGCCACCAAAGGATCATCGTCATCTTTTACAGTACGTGCGGCTGCTGCTGACCCCGATAGACCTCTGTGGTTTCCAGGAAGCACCCCTCCCCCATGGCTCGATGGAAGCCTGCCAGGAGACTTCGGCTTCGATCCTCTTGGTCTTTCATCTGACCCAGACAGCCTGAAATGGAACCAGCAAGCAGAGCTTGTACACTGCAGATGGGCAATGCTCGGCGCAGCCGGAATCTTCATCCCCGAATTCTTGACCAAAATCGGCATTCTAAACACCCCGTCATGGTACACAGCCGGAGAGCAAGAGTACTTCACAGACACCACCACTCTCTTCGTCGTTGAGCTTGTTTTGATCGGGTGGGCCGAGGGGAGGAGATGGGCCGACATCCTCAAGCCCGGCTCCGTTAACACCGACCCAATCTTCCCCAACAACAAGCTCACCGGGACAGATGTAGGGTACCCGGGAGGGCTCTGGTTCGACCCACTTGGATGGGGAAGCGGCTCGCCTGAGAAGATCAAGGAGTTGAGGACAAAGGAGATTAAGAACGGAAGGCTAGCTATGTTGGCTGTGATGGGGGCTTGGTTTCAACACATTTACACTGGGACTGGCCCCATCGACAACCTCTTCGCTCACCTCGCTGATCCCGGCCATGCCACCATTTTCGCTTCTTTCTCCCCCAAGTGA

Protein Analysis

337

Amino Acids

36.52

Weight (kDa)

9.26

Isoelectric Point (pI)

43.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chloroa_b-bind PF00504 140 - 306 2e-53 Chlorophyll A-B binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61470
fragaria_vesca FvH4_4g23750 FvH4_4g23750
malus_domestica MD13G1119100.v1.1 MD16G1119500.v1.1
prunus_persica Prupe.1G225700_v2.0.a1
pyrus_communis pycom13g10390 pycom16g10220
rosa_chinensis RchiOBHm_Chr4g0430241
rosa_laevigata RLG00000006992
rosa_multiflora Rmu_sc0001089.1_g000008
rosa_roxburghii Rroxscaffold_5G00372030
rosa_rugosa Rorug04G0241800
rosa_samantha Rh4AG298200 Rh4BG304800 Rh4CG320100 Rh4DG302100
rosa_wichuraiana Rw4G025870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 783
AccB1I GGYRCC 2 cut(s) 37, 783
AccII CGCG 1 cut(s) 250
AciI CCGC 5 cut(s) 204, 222, 278, 371, 825
AclWI GGATC 3 cut(s) 352, 458, 962
AcoI YGGCCR 1 cut(s) 973
AcsI RAATTY 1 cut(s) 572
AfaI GTAC 5 cut(s) 366, 525, 614, 635, 785
AfiI CCNNNNNNNGG 3 cut(s) 207, 609, 696
AgsI TTSAA 2 cut(s) 92, 914
AjnI CCWGG 3 cut(s) 206, 406, 445
AluBI AGCT 6 cut(s) 313, 327, 520, 670, 763, 884
AluI AGCT 6 cut(s) 313, 327, 520, 670, 763, 884
Alw26I GTCTC 2 cut(s) 122, 444
AlwI GGATC 3 cut(s) 352, 458, 962
AlwNI CAGNNNCTG 1 cut(s) 23
Ama87I CYCGRG 1 cut(s) 787
AoxI GGCC 6 cut(s) 7, 198, 687, 705, 934, 973
ApaI GGGCCC 1 cut(s) 11
ApeKI GCWGC 4 cut(s) 230, 374, 377, 551
ApoI RAATTY 1 cut(s) 572
ArsI GACNNNNNNTTYG 4 cut(s) 443, 475, 935, 967
Asp718I GGTACC 1 cut(s) 783
AspLEI GCGC 2 cut(s) 252, 551
AspS9I GGNCC 5 cut(s) 7, 8, 687, 705, 935
AsuC2I CCSGG 5 cut(s) 723, 769, 788, 789, 972
AsuHPI GGTGA 2 cut(s) 757, 950
AsuNHI GCTAGC 1 cut(s) 880
AvaI CYCGRG 1 cut(s) 787
BaeGI GKGCMC 1 cut(s) 11
BanI GGYRCC 2 cut(s) 37, 783
BanII GRGCYC 2 cut(s) 11, 798
BbsI GAAGAC 1 cut(s) 261
BbvI GCAGC 4 cut(s) 242, 361, 364, 563
BccI CCATC 6 cut(s) 428, 528, 696, 810, 892, 947
BceAI ACGGC 1 cut(s) 218
BciT130I CCWGG 3 cut(s) 208, 408, 447
BcnI CCSGG 5 cut(s) 723, 769, 788, 789, 972
BcoDI GTCTC 2 cut(s) 122, 444
BfaI CTAG 1 cut(s) 881
BfmI CTRYAG 1 cut(s) 529
BisI GCNGC 7 cut(s) 231, 279, 372, 375, 378, 552, 826
BlsI GCNGC 7 cut(s) 232, 280, 373, 376, 379, 553, 827
BmcAI AGTACT 1 cut(s) 635
Bme1390I CCNGG 8 cut(s) 208, 408, 447, 723, 769, 788, 789, 972
BmeT110I CYCGRG 1 cut(s) 787
BmgT120I GGNCC 5 cut(s) 7, 8, 687, 705, 935
BmiI GGNNCC 6 cut(s) 9, 39, 506, 727, 785, 937
BmrFI CCNGG 8 cut(s) 208, 408, 447, 723, 769, 788, 789, 972
BmrI ACTGGG 1 cut(s) 936
BmtI GCTAGC 1 cut(s) 884
BmuI ACTGGG 1 cut(s) 936
BpiI GAAGAC 1 cut(s) 261
BpuEI CTTGAG 1 cut(s) 701
BpuMI CCSGG 5 cut(s) 723, 769, 788, 789, 972
BsaAI YACGTR 1 cut(s) 368
BsaJI CCNNGG 4 cut(s) 207, 425, 690, 787
Bsc4I CCNNNNNNNGG 3 cut(s) 207, 609, 696
Bse1I ACTGG 2 cut(s) 931, 937
Bse3DI GCAATG 2 cut(s) 225, 546
BseBI CCWGG 3 cut(s) 208, 408, 447
BseDI CCNNGG 4 cut(s) 207, 425, 690, 787
BseGI GGATG 3 cut(s) 564, 711, 821
BseLI CCNNNNNNNGG 3 cut(s) 207, 609, 696
BseMI GCAATG 2 cut(s) 225, 546
BseMII CTCAG 3 cut(s) 30, 305, 825
BseNI ACTGG 2 cut(s) 931, 937
BseRI GAGGAG 1 cut(s) 712
BseSI GKGCMC 1 cut(s) 11
BseXI GCAGC 4 cut(s) 242, 361, 364, 563
Bsh1236I CGCG 1 cut(s) 250
BshFI GGCC 6 cut(s) 9, 200, 689, 707, 936, 975
BshNI GGYRCC 2 cut(s) 37, 783
BsiHKCI CYCGRG 1 cut(s) 787
BsiSI CCGG 6 cut(s) 555, 621, 723, 768, 788, 972
BslFI GGGAC 2 cut(s) 784, 943
BslI CCNNNNNNNGG 3 cut(s) 207, 609, 696
BsmAI GTCTC 2 cut(s) 122, 444
BsmBI CGTCTC 1 cut(s) 122
BsmFI GGGAC 2 cut(s) 784, 943
BsmI GAATGC 1 cut(s) 591
BsnI GGCC 6 cut(s) 9, 200, 689, 707, 936, 975
BsoBI CYCGRG 1 cut(s) 787
Bsp120I GGGCCC 1 cut(s) 7
Bsp1286I GDGCHC 2 cut(s) 11, 798
Bsp1407I TGTACA 1 cut(s) 523
Bsp143I GATC 6 cut(s) 157, 344, 463, 678, 840, 967
Bsp19I CCATGG 1 cut(s) 425
BspACI CCGC 5 cut(s) 204, 222, 278, 371, 825
BspANI GGCC 6 cut(s) 9, 200, 689, 707, 936, 975
BspCNI CTCAG 3 cut(s) 29, 306, 826
BspFNI CGCG 1 cut(s) 250
BspLI GGNNCC 6 cut(s) 9, 39, 506, 727, 785, 937
BspMAI CTGCAG 1 cut(s) 533
BspOI GCTAGC 1 cut(s) 884
BspPI GGATC 3 cut(s) 352, 458, 962
BspT107I GGYRCC 2 cut(s) 37, 783
BsrDI GCAATG 2 cut(s) 225, 546
BsrGI TGTACA 1 cut(s) 523
BsrI ACTGG 2 cut(s) 931, 937
BssECI CCNNGG 4 cut(s) 207, 425, 690, 787
BssMI GATC 6 cut(s) 157, 344, 463, 678, 840, 967
BssT1I CCWWGG 1 cut(s) 425
Bst2UI CCWGG 3 cut(s) 208, 408, 447
Bst4CI ACNGT 2 cut(s) 149, 364
Bst6I CTCTTC 3 cut(s) 223, 662, 956
BstAUI TGTACA 1 cut(s) 523
BstBAI YACGTR 1 cut(s) 368
BstC8I GCNNGC 5 cut(s) 28, 443, 513, 830, 882
BstDEI CTNAG 4 cut(s) 16, 285, 314, 834
BstDSI CCRYGG 1 cut(s) 425
BstF5I GGATG 3 cut(s) 564, 711, 821
BstFNI CGCG 1 cut(s) 250
BstHHI GCGC 2 cut(s) 252, 551
BstKTI GATC 6 cut(s) 160, 347, 466, 681, 843, 970
BstMAI GTCTC 2 cut(s) 122, 444
BstMBI GATC 6 cut(s) 157, 344, 463, 678, 840, 967
BstMWI GCNNNNNNNGC 7 cut(s) 230, 236, 287, 377, 517, 890, 962
BstNI CCWGG 3 cut(s) 208, 408, 447
BstNSI RCATGY 1 cut(s) 30
BstSCI CCNGG 8 cut(s) 206, 406, 445, 721, 767, 786, 787, 970
BstSFI CTRYAG 1 cut(s) 529
BstSLI GKGCMC 1 cut(s) 11
BstUI CGCG 1 cut(s) 250
BstV1I GCAGC 4 cut(s) 242, 361, 364, 563
BstV2I GAAGAC 1 cut(s) 261
BstXI CCANNNNNNTGG 2 cut(s) 263, 816
BsuRI GGCC 6 cut(s) 9, 200, 689, 707, 936, 975
BtgI CCRYGG 1 cut(s) 425
BtsCI GGATG 3 cut(s) 564, 711, 821
BtsI GCAGTG 1 cut(s) 526
BtsIMutI CAGTG 2 cut(s) 526, 924
Cac8I GCNNGC 5 cut(s) 28, 443, 513, 830, 882
CaiI CAGNNNCTG 1 cut(s) 23
CfoI GCGC 2 cut(s) 252, 551
Cfr13I GGNCC 5 cut(s) 7, 8, 687, 705, 935
Cfr9I CCCGGG 1 cut(s) 787
CseI GACGC 1 cut(s) 104
Csp6I GTAC 5 cut(s) 365, 524, 613, 634, 784
CviAII CATG 5 cut(s) 27, 34, 426, 609, 977
CviQI GTAC 5 cut(s) 365, 524, 613, 634, 784
DdeI CTNAG 4 cut(s) 16, 285, 314, 834
DpnI GATC 6 cut(s) 159, 346, 465, 680, 842, 969
DpnII GATC 6 cut(s) 157, 344, 463, 678, 840, 967
EaeI YGGCCR 1 cut(s) 973
Eam1104I CTCTTC 3 cut(s) 223, 662, 956
EarI CTCTTC 3 cut(s) 223, 662, 956
EciI GGCGGA 2 cut(s) 193, 211
Eco130I CCWWGG 1 cut(s) 425
Eco24I GRGCYC 2 cut(s) 11, 798
Eco88I CYCGRG 1 cut(s) 787
EcoO109I RGGNCCY 1 cut(s) 7
EcoRI GAATTC 1 cut(s) 572
EcoRII CCWGG 3 cut(s) 206, 406, 445
EcoT14I CCWWGG 1 cut(s) 425
EcoT38I GRGCYC 2 cut(s) 11, 798
ErhI CCWWGG 1 cut(s) 425
Esp3I CGTCTC 1 cut(s) 122
FaeI CATG 5 cut(s) 30, 37, 429, 612, 980
FaiI YATR 7 cut(s) 28, 35, 145, 427, 610, 887, 978
FalI AAGNNNNNCTT 2 cut(s) 504, 536
FaqI GGGAC 2 cut(s) 784, 943
FatI CATG 5 cut(s) 26, 33, 425, 608, 976
Fnu4HI GCNGC 7 cut(s) 231, 279, 372, 375, 378, 552, 826
FokI GGATG 3 cut(s) 551, 698, 828
FriOI GRGCYC 2 cut(s) 11, 798
Fsp4HI GCNGC 7 cut(s) 231, 279, 372, 375, 378, 552, 826
FspBI CTAG 1 cut(s) 881
GlaI GCGC 2 cut(s) 251, 550
GluI GCNGC 7 cut(s) 231, 279, 372, 375, 378, 552, 826
HaeIII GGCC 6 cut(s) 9, 200, 689, 707, 936, 975
HapII CCGG 6 cut(s) 555, 621, 723, 768, 788, 972
HgaI GACGC 1 cut(s) 104
HhaI GCGC 2 cut(s) 252, 551
Hin1II CATG 5 cut(s) 30, 37, 429, 612, 980
Hin6I GCGC 2 cut(s) 250, 549
HinP1I GCGC 2 cut(s) 250, 549
HincII GTYRAC 1 cut(s) 733
HindII GTYRAC 1 cut(s) 733
HindIII AAGCTT 1 cut(s) 325
HinfI GANTC 2 cut(s) 20, 558
HpaI GTTAAC 1 cut(s) 733
HpaII CCGG 6 cut(s) 555, 621, 723, 768, 788, 972
HphI GGTGA 2 cut(s) 757, 950
Hpy166II GTNNAC 3 cut(s) 526, 615, 733
Hpy188I TCNGA 3 cut(s) 19, 56, 484
Hpy188III TCNNGA 1 cut(s) 577
Hpy8I GTNNAC 3 cut(s) 526, 615, 733
Hpy99I CGWCG 3 cut(s) 239, 250, 665
HpyAV CCTTC 3 cut(s) 98, 253, 870
HpyCH4III ACNGT 2 cut(s) 149, 364
HpyCH4IV ACGT 1 cut(s) 367
HpyCH4V TGCA 3 cut(s) 26, 230, 531
HpyF10VI GCNNNNNNNGC 7 cut(s) 230, 236, 287, 377, 517, 890, 962
HpyF3I CTNAG 4 cut(s) 16, 285, 314, 834
HpySE526I ACGT 1 cut(s) 367
Hsp92II CATG 5 cut(s) 30, 37, 429, 612, 980
HspAI GCGC 2 cut(s) 250, 549
KpnI GGTACC 1 cut(s) 787
KspAI GTTAAC 1 cut(s) 733
Kzo9I GATC 6 cut(s) 157, 344, 463, 678, 840, 967
LmnI GCTCC 2 cut(s) 257, 731
Lsp1109I GCAGC 4 cut(s) 242, 361, 364, 563
MaeI CTAG 1 cut(s) 881
MaeII ACGT 1 cut(s) 367
MalI GATC 6 cut(s) 159, 346, 465, 680, 842, 969
MboI GATC 6 cut(s) 157, 344, 463, 678, 840, 967
MboII GAAGA 7 cut(s) 210, 261, 553, 649, 739, 850, 943
MhlI GDGCHC 2 cut(s) 11, 798
MluCI AATT 2 cut(s) 92, 572
MseI TTAA 3 cut(s) 104, 732, 867
MslI CAYNNNNRTG 1 cut(s) 814
MspI CCGG 6 cut(s) 555, 621, 723, 768, 788, 972
MspR9I CCNGG 8 cut(s) 208, 408, 447, 723, 769, 788, 789, 972
Mva1269I GAATGC 1 cut(s) 591
MvaI CCWGG 3 cut(s) 208, 408, 447
MvnI CGCG 1 cut(s) 250
MwoI GCNNNNNNNGC 7 cut(s) 230, 236, 287, 377, 517, 890, 962
NciI CCSGG 5 cut(s) 723, 769, 788, 789, 972
NcoI CCATGG 1 cut(s) 425
NdeII GATC 6 cut(s) 157, 344, 463, 678, 840, 967
NheI GCTAGC 1 cut(s) 880
NlaIII CATG 5 cut(s) 30, 37, 429, 612, 980
NlaIV GGNNCC 6 cut(s) 9, 39, 506, 727, 785, 937
NmeAIII GCCGAG 2 cut(s) 525, 715
NspI RCATGY 1 cut(s) 30
PaeI GCATGC 1 cut(s) 30
PcsI WCGNNNNNNNCGW 1 cut(s) 687
PctI GAATGC 1 cut(s) 591
PfeI GAWTC 2 cut(s) 20, 558
PfoI TCCNGGA 1 cut(s) 406
PkrI GCNGC 7 cut(s) 232, 280, 373, 376, 379, 553, 827
Ppu21I YACGTR 1 cut(s) 368
Psp6I CCWGG 3 cut(s) 206, 406, 445
PspGI CCWGG 3 cut(s) 206, 406, 445
PspN4I GGNNCC 6 cut(s) 9, 39, 506, 727, 785, 937
PspOMI GGGCCC 1 cut(s) 7
PspPI GGNCC 5 cut(s) 7, 8, 687, 705, 935
PstI CTGCAG 1 cut(s) 533
PstNI CAGNNNCTG 1 cut(s) 23
RsaI GTAC 5 cut(s) 366, 525, 614, 635, 785
RsaNI GTAC 5 cut(s) 365, 524, 613, 634, 784
RseI CAYNNNNRTG 1 cut(s) 814
SaqAI TTAA 3 cut(s) 104, 732, 867
SatI GCNGC 7 cut(s) 231, 279, 372, 375, 378, 552, 826
Sau3AI GATC 6 cut(s) 157, 344, 463, 678, 840, 967
Sau96I GGNCC 5 cut(s) 7, 8, 687, 705, 935
ScaI AGTACT 1 cut(s) 635
ScrFI CCNGG 8 cut(s) 208, 408, 447, 723, 769, 788, 789, 972
SduI GDGCHC 2 cut(s) 11, 798
SfcI CTRYAG 1 cut(s) 529
SmaI CCCGGG 1 cut(s) 789
SmiMI CAYNNNNRTG 1 cut(s) 814
SmlI CTYRAG 1 cut(s) 716
SmoI CTYRAG 1 cut(s) 716
SphI GCATGC 1 cut(s) 30
Sse9I AATT 2 cut(s) 92, 572
SsiI CCGC 5 cut(s) 204, 222, 278, 371, 825
SspMI CTAG 1 cut(s) 881
StyD4I CCNGG 8 cut(s) 206, 406, 445, 721, 767, 786, 787, 970
StyI CCWWGG 1 cut(s) 425
TaaI ACNGT 2 cut(s) 149, 364
TaiI ACGT 1 cut(s) 370
TaqI TCGA 6 cut(s) 182, 190, 432, 462, 804, 942
TasI AATT 2 cut(s) 92, 572
TatI WGTACW 2 cut(s) 523, 633
TauI GCSGC 3 cut(s) 281, 374, 828
TfiI GAWTC 2 cut(s) 20, 558
Tru1I TTAA 3 cut(s) 104, 732, 867
Tru9I TTAA 3 cut(s) 104, 732, 867
TscAI CASTG 2 cut(s) 533, 931
TseI GCWGC 4 cut(s) 230, 374, 377, 551
TspDTI ATGAA 3 cut(s) 17, 468, 553
TspGWI ACGGA 2 cut(s) 718, 888
TspMI CCCGGG 1 cut(s) 787
TspRI CASTG 2 cut(s) 533, 931
XapI RAATTY 1 cut(s) 572
XceI RCATGY 1 cut(s) 30
XmaI CCCGGG 1 cut(s) 787
XspI CTAG 1 cut(s) 881
ZrmI AGTACT 1 cut(s) 635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.