pycom13g10390

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Forward (+)
6960748 .. 6963674
2927 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g10390.2

Sequence Viewer

Length: 1053 bp
ATGATGACATGTTTGCCACATCAGCTTAAGAATATATTTAATATTTTGAAAGTAATATTAGATATCTACTTGGGCCTCCTTATACGATGCCGTCATTGGTTGCGATCAGTTCTCAGATATATCGGTGGCTCTGACTTGCAATCTAAGCCACCAGCTTGTGATTTTTCCAGGAAAGCTCAACAACTGGACGTGGAAGGAATGAAGGGCCCACTCTCAGATTCTGCATGCCACATGGCACCCCAAAAGCCAATCGGACACCACTCTCCTATCCTACAAGATAAGCCCCTTCAATTCTGTACATTAACTCATCTGCGTCTCTCTCCCCAAACACTCCAAACCCCATACAATTTCACAGATCAAATAAGCAACAGAGTTTGGTCGAAGCCTCGAAAAATGGCCTCCGCCTGGGCTTCCTCTTCCGCCATTGCAGCCGTCGCTGTATCCTCCCAGAAGGGCGGGTCTTCTTTGGCGGCAACTAAGGCTTCTTTCTTTGGTGGGAGGAAGCTGAGAGTGAGAAGCTTCACAGCCGCCACAGGATCATCGTCATCTTTTACAGTACGTGCGGCTGCTGCTGACCCTGATAGGCCTCTGTGGTTTCCAGGAAGCACCCCTCCCCCATGGCTCGATGGAAGCCTCCCAGGAGACTTCGGCTTCGATCCTCTTGGTCTTTCATCTGACCCAGACAGCCTGAAATGGAACCAGCAAGCAGAGCTTGTACACTGCAGATGGGCAATGCTCGGCGCAGCCGGAATCTTCATCCCCGAATTCTTGACCAAAATCGGCATTCTAAACACCCCCTCATGGTACACAGCCGGAGAGCAAGAGTACTTCACAGACACCACCACTCTCTTCGTCGTTGAGCTTGTTTTGATCGGGTGGGCCGAGGGGAGGAGATGGGCCGACATCCTCAAGCCGGGTTCAGTTAACACGGACCCAATCTTCCCCAACAACAAGCTCACCGGGACAGATGTAGGGTACCCGGGAGGGCTCTGGTTCGATCCACTTGGATGGGGAAGCGGCTCGCCTGAGAAGCGGGATCGATCAAGGAGTTGA

Protein Analysis

351

Amino Acids

38.42

Weight (kDa)

9.22

Isoelectric Point (pI)

56.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013316)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 975
AccB1I GGYRCC 2 cut(s) 235, 975
AciI CCGC 8 cut(s) 402, 420, 456, 470, 528, 563, 1017, 1033
AclWI GGATC 4 cut(s) 544, 650, 992, 1044
AcsI RAATTY 1 cut(s) 764
AfaI GTAC 6 cut(s) 298, 558, 717, 806, 827, 977
AfiI CCNNNNNNNGG 4 cut(s) 405, 801, 888, 913
AflII CTTAAG 1 cut(s) 26
AflIII ACRYGT 1 cut(s) 8
AgsI TTSAA 2 cut(s) 49, 290
AjiI CACGTC 1 cut(s) 190
AjnI CCWGG 4 cut(s) 167, 404, 598, 637
AluBI AGCT 8 cut(s) 25, 155, 176, 505, 519, 712, 862, 955
AluI AGCT 8 cut(s) 25, 155, 176, 505, 519, 712, 862, 955
Alw26I GTCTC 2 cut(s) 320, 636
AlwI GGATC 4 cut(s) 544, 650, 992, 1044
AlwNI CAGNNNCTG 1 cut(s) 221
Ama87I CYCGRG 1 cut(s) 979
AoxI GGCC 6 cut(s) 73, 205, 396, 584, 879, 897
ApaI GGGCCC 1 cut(s) 209
ApeKI GCWGC 4 cut(s) 428, 566, 569, 743
ApoI RAATTY 1 cut(s) 764
ArsI GACNNNNNNTTYG 2 cut(s) 635, 667
Asp718I GGTACC 1 cut(s) 975
AspLEI GCGC 1 cut(s) 743
AspS9I GGNCC 6 cut(s) 73, 205, 206, 879, 897, 931
AsuC2I CCSGG 4 cut(s) 915, 961, 980, 981
AsuHPI GGTGA 1 cut(s) 949
AvaI CYCGRG 1 cut(s) 979
AvaII GGWCC 1 cut(s) 931
BaeGI GKGCMC 1 cut(s) 209
BanI GGYRCC 2 cut(s) 235, 975
BanII GRGCYC 2 cut(s) 209, 990
BbsI GAAGAC 1 cut(s) 453
BbvI GCAGC 4 cut(s) 440, 553, 556, 755
BccI CCATC 4 cut(s) 620, 720, 888, 1002
BceAI ACGGC 2 cut(s) 75, 416
BciT130I CCWGG 4 cut(s) 169, 406, 600, 639
BciVI GTATCC 1 cut(s) 451
BcnI CCSGG 4 cut(s) 915, 961, 980, 981
BcoDI GTCTC 2 cut(s) 320, 636
BfmI CTRYAG 1 cut(s) 721
BfrI CTTAAG 1 cut(s) 26
BfuI GTATCC 1 cut(s) 451
BisI GCNGC 8 cut(s) 429, 471, 528, 564, 567, 570, 744, 1018
BlsI GCNGC 8 cut(s) 430, 472, 529, 565, 568, 571, 745, 1019
BmcAI AGTACT 1 cut(s) 827
Bme1390I CCNGG 8 cut(s) 169, 406, 600, 639, 915, 961, 980, 981
Bme18I GGWCC 1 cut(s) 931
BmeT110I CYCGRG 1 cut(s) 979
BmgBI CACGTC 1 cut(s) 190
BmgT120I GGNCC 6 cut(s) 73, 205, 206, 879, 897, 931
BmiI GGNNCC 5 cut(s) 207, 237, 698, 933, 977
BmrFI CCNGG 8 cut(s) 169, 406, 600, 639, 915, 961, 980, 981
BmsI GCATC 1 cut(s) 77
BpiI GAAGAC 1 cut(s) 453
BpuEI CTTGAG 1 cut(s) 893
BpuMI CCSGG 4 cut(s) 915, 961, 980, 981
Bsa29I ATCGAT 1 cut(s) 1039
BsaAI YACGTR 1 cut(s) 560
BsaJI CCNNGG 5 cut(s) 405, 617, 637, 882, 979
Bsc4I CCNNNNNNNGG 4 cut(s) 405, 801, 888, 913
Bse1I ACTGG 1 cut(s) 189
Bse3DI GCAATG 2 cut(s) 423, 738
BseBI CCWGG 4 cut(s) 169, 406, 600, 639
BseCI ATCGAT 1 cut(s) 1039
BseDI CCNNGG 5 cut(s) 405, 617, 637, 882, 979
BseGI GGATG 3 cut(s) 756, 903, 1013
BseLI CCNNNNNNNGG 4 cut(s) 405, 801, 888, 913
BseMI GCAATG 2 cut(s) 423, 738
BseMII CTCAG 4 cut(s) 127, 228, 497, 1017
BseNI ACTGG 1 cut(s) 189
BseRI GAGGAG 1 cut(s) 904
BseSI GKGCMC 1 cut(s) 209
BseXI GCAGC 4 cut(s) 440, 553, 556, 755
BshFI GGCC 6 cut(s) 75, 207, 398, 586, 881, 899
BshNI GGYRCC 2 cut(s) 235, 975
BshVI ATCGAT 1 cut(s) 1039
BsiHKCI CYCGRG 1 cut(s) 979
BsiSI CCGG 5 cut(s) 747, 813, 914, 960, 980
BslFI GGGAC 1 cut(s) 976
BslI CCNNNNNNNGG 4 cut(s) 405, 801, 888, 913
BsmAI GTCTC 2 cut(s) 320, 636
BsmBI CGTCTC 1 cut(s) 320
BsmFI GGGAC 1 cut(s) 976
BsmI GAATGC 1 cut(s) 783
BsnI GGCC 6 cut(s) 75, 207, 398, 586, 881, 899
BsoBI CYCGRG 1 cut(s) 979
Bsp120I GGGCCC 1 cut(s) 205
Bsp1286I GDGCHC 2 cut(s) 209, 990
Bsp1407I TGTACA 2 cut(s) 296, 715
Bsp143I GATC 8 cut(s) 104, 355, 536, 655, 870, 997, 1036, 1040
Bsp19I CCATGG 1 cut(s) 617
BspACI CCGC 8 cut(s) 402, 420, 456, 470, 528, 563, 1017, 1033
BspANI GGCC 6 cut(s) 75, 207, 398, 586, 881, 899
BspCNI CTCAG 4 cut(s) 126, 227, 498, 1018
BspDI ATCGAT 1 cut(s) 1039
BspLI GGNNCC 5 cut(s) 207, 237, 698, 933, 977
BspMAI CTGCAG 1 cut(s) 725
BspPI GGATC 4 cut(s) 544, 650, 992, 1044
BspT107I GGYRCC 2 cut(s) 235, 975
BspTI CTTAAG 1 cut(s) 26
BsrDI GCAATG 2 cut(s) 423, 738
BsrGI TGTACA 2 cut(s) 296, 715
BsrI ACTGG 1 cut(s) 189
BssECI CCNNGG 5 cut(s) 405, 617, 637, 882, 979
BssMI GATC 8 cut(s) 104, 355, 536, 655, 870, 997, 1036, 1040
BssT1I CCWWGG 1 cut(s) 617
Bst2UI CCWGG 4 cut(s) 169, 406, 600, 639
Bst4CI ACNGT 1 cut(s) 556
Bst6I CTCTTC 2 cut(s) 421, 854
BstAFI CTTAAG 1 cut(s) 26
BstAUI TGTACA 2 cut(s) 296, 715
BstBAI YACGTR 1 cut(s) 560
BstC8I GCNNGC 3 cut(s) 226, 705, 1022
BstDEI CTNAG 6 cut(s) 113, 144, 214, 477, 506, 1026
BstDSI CCRYGG 1 cut(s) 617
BstF5I GGATG 3 cut(s) 756, 903, 1013
BstHHI GCGC 1 cut(s) 743
BstKTI GATC 8 cut(s) 107, 358, 539, 658, 873, 1000, 1039, 1043
BstMAI GTCTC 2 cut(s) 320, 636
BstMBI GATC 8 cut(s) 104, 355, 536, 655, 870, 997, 1036, 1040
BstMWI GCNNNNNNNGC 8 cut(s) 22, 145, 428, 434, 479, 569, 709, 1030
BstNI CCWGG 4 cut(s) 169, 406, 600, 639
BstNSI RCATGY 2 cut(s) 12, 228
BstSCI CCNGG 8 cut(s) 167, 404, 598, 637, 913, 959, 978, 979
BstSFI CTRYAG 1 cut(s) 721
BstSLI GKGCMC 1 cut(s) 209
BstV1I GCAGC 4 cut(s) 440, 553, 556, 755
BstV2I GAAGAC 1 cut(s) 453
BstXI CCANNNNNNTGG 1 cut(s) 1008
Bsu15I ATCGAT 1 cut(s) 1039
BsuI GTATCC 1 cut(s) 451
BsuRI GGCC 6 cut(s) 75, 207, 398, 586, 881, 899
BsuTUI ATCGAT 1 cut(s) 1039
BtgI CCRYGG 1 cut(s) 617
BtrI CACGTC 1 cut(s) 190
BtsCI GGATG 3 cut(s) 756, 903, 1013
BtsI GCAGTG 1 cut(s) 718
BtsIMutI CAGTG 1 cut(s) 718
Cac8I GCNNGC 3 cut(s) 226, 705, 1022
CaiI CAGNNNCTG 1 cut(s) 221
CfoI GCGC 1 cut(s) 743
Cfr13I GGNCC 6 cut(s) 73, 205, 206, 879, 897, 931
Cfr9I CCCGGG 1 cut(s) 979
ClaI ATCGAT 1 cut(s) 1039
CseI GACGC 1 cut(s) 302
Csp6I GTAC 6 cut(s) 297, 557, 716, 805, 826, 976
CviAII CATG 5 cut(s) 9, 225, 232, 618, 801
CviQI GTAC 6 cut(s) 297, 557, 716, 805, 826, 976
DdeI CTNAG 6 cut(s) 113, 144, 214, 477, 506, 1026
DpnI GATC 8 cut(s) 106, 357, 538, 657, 872, 999, 1038, 1042
DpnII GATC 8 cut(s) 104, 355, 536, 655, 870, 997, 1036, 1040
Eam1104I CTCTTC 2 cut(s) 421, 854
EarI CTCTTC 2 cut(s) 421, 854
EciI GGCGGA 2 cut(s) 391, 409
Eco130I CCWWGG 1 cut(s) 617
Eco147I AGGCCT 1 cut(s) 586
Eco24I GRGCYC 2 cut(s) 209, 990
Eco32I GATATC 1 cut(s) 64
Eco47I GGWCC 1 cut(s) 931
Eco88I CYCGRG 1 cut(s) 979
EcoO109I RGGNCCY 1 cut(s) 205
EcoRI GAATTC 1 cut(s) 764
EcoRII CCWGG 4 cut(s) 167, 404, 598, 637
EcoRV GATATC 1 cut(s) 64
EcoT14I CCWWGG 1 cut(s) 617
EcoT38I GRGCYC 2 cut(s) 209, 990
ErhI CCWWGG 1 cut(s) 617
Esp3I CGTCTC 1 cut(s) 320
FaeI CATG 5 cut(s) 12, 228, 235, 621, 804
FaiI YATR 9 cut(s) 10, 35, 83, 120, 226, 233, 343, 619, 802
FalI AAGNNNNNCTT 2 cut(s) 696, 728
FaqI GGGAC 1 cut(s) 976
FatI CATG 5 cut(s) 8, 224, 231, 617, 800
FauI CCCGC 2 cut(s) 449, 1026
Fnu4HI GCNGC 8 cut(s) 429, 471, 528, 564, 567, 570, 744, 1018
FokI GGATG 3 cut(s) 743, 890, 1020
FriOI GRGCYC 2 cut(s) 209, 990
Fsp4HI GCNGC 8 cut(s) 429, 471, 528, 564, 567, 570, 744, 1018
GlaI GCGC 1 cut(s) 742
GluI GCNGC 8 cut(s) 429, 471, 528, 564, 567, 570, 744, 1018
HaeIII GGCC 6 cut(s) 75, 207, 398, 586, 881, 899
HapII CCGG 5 cut(s) 747, 813, 914, 960, 980
HgaI GACGC 1 cut(s) 302
HhaI GCGC 1 cut(s) 743
Hin1II CATG 5 cut(s) 12, 228, 235, 621, 804
Hin6I GCGC 1 cut(s) 741
HinP1I GCGC 1 cut(s) 741
HincII GTYRAC 1 cut(s) 925
HindII GTYRAC 1 cut(s) 925
HindIII AAGCTT 1 cut(s) 517
HinfI GANTC 2 cut(s) 218, 750
HpaI GTTAAC 1 cut(s) 925
HpaII CCGG 5 cut(s) 747, 813, 914, 960, 980
HphI GGTGA 1 cut(s) 949
Hpy166II GTNNAC 3 cut(s) 718, 807, 925
Hpy188I TCNGA 5 cut(s) 116, 133, 217, 254, 676
Hpy188III TCNNGA 1 cut(s) 769
Hpy8I GTNNAC 3 cut(s) 718, 807, 925
Hpy99I CGWCG 2 cut(s) 437, 857
HpyAV CCTTC 4 cut(s) 188, 196, 296, 445
HpyCH4III ACNGT 1 cut(s) 556
HpyCH4IV ACGT 2 cut(s) 189, 559
HpyCH4V TGCA 4 cut(s) 139, 224, 428, 723
HpyF10VI GCNNNNNNNGC 8 cut(s) 22, 145, 428, 434, 479, 569, 709, 1030
HpyF3I CTNAG 6 cut(s) 113, 144, 214, 477, 506, 1026
HpySE526I ACGT 2 cut(s) 189, 559
Hsp92II CATG 5 cut(s) 12, 228, 235, 621, 804
HspAI GCGC 1 cut(s) 741
KpnI GGTACC 1 cut(s) 979
KspAI GTTAAC 1 cut(s) 925
Kzo9I GATC 8 cut(s) 104, 355, 536, 655, 870, 997, 1036, 1040
Lsp1109I GCAGC 4 cut(s) 440, 553, 556, 755
LweI GCATC 1 cut(s) 77
MaeII ACGT 2 cut(s) 189, 559
MalI GATC 8 cut(s) 106, 357, 538, 657, 872, 999, 1038, 1042
MboI GATC 8 cut(s) 104, 355, 536, 655, 870, 997, 1036, 1040
MboII GAAGA 5 cut(s) 408, 453, 745, 841, 931
MhlI GDGCHC 2 cut(s) 209, 990
MluCI AATT 3 cut(s) 290, 346, 764
MseI TTAA 4 cut(s) 27, 39, 302, 924
MslI CAYNNNNRTG 1 cut(s) 1006
MspCI CTTAAG 1 cut(s) 26
MspI CCGG 5 cut(s) 747, 813, 914, 960, 980
MspR9I CCNGG 8 cut(s) 169, 406, 600, 639, 915, 961, 980, 981
Mva1269I GAATGC 1 cut(s) 783
MvaI CCWGG 4 cut(s) 169, 406, 600, 639
MwoI GCNNNNNNNGC 8 cut(s) 22, 145, 428, 434, 479, 569, 709, 1030
NciI CCSGG 4 cut(s) 915, 961, 980, 981
NcoI CCATGG 1 cut(s) 617
NdeII GATC 8 cut(s) 104, 355, 536, 655, 870, 997, 1036, 1040
NlaIII CATG 5 cut(s) 12, 228, 235, 621, 804
NlaIV GGNNCC 5 cut(s) 207, 237, 698, 933, 977
NmeAIII GCCGAG 2 cut(s) 717, 907
NspI RCATGY 2 cut(s) 12, 228
PaeI GCATGC 1 cut(s) 228
PceI AGGCCT 1 cut(s) 586
PciI ACATGT 1 cut(s) 8
PcsI WCGNNNNNNNCGW 1 cut(s) 879
PctI GAATGC 1 cut(s) 783
PfeI GAWTC 2 cut(s) 218, 750
PfoI TCCNGGA 2 cut(s) 167, 598
PkrI GCNGC 8 cut(s) 430, 472, 529, 565, 568, 571, 745, 1019
Ppu21I YACGTR 1 cut(s) 560
PscI ACATGT 1 cut(s) 8
Psp6I CCWGG 4 cut(s) 167, 404, 598, 637
PspGI CCWGG 4 cut(s) 167, 404, 598, 637
PspN4I GGNNCC 5 cut(s) 207, 237, 698, 933, 977
PspOMI GGGCCC 1 cut(s) 205
PspPI GGNCC 6 cut(s) 73, 205, 206, 879, 897, 931
PstI CTGCAG 1 cut(s) 725
PstNI CAGNNNCTG 1 cut(s) 221
RsaI GTAC 6 cut(s) 298, 558, 717, 806, 827, 977
RsaNI GTAC 6 cut(s) 297, 557, 716, 805, 826, 976
RseI CAYNNNNRTG 1 cut(s) 1006
SaqAI TTAA 4 cut(s) 27, 39, 302, 924
SatI GCNGC 8 cut(s) 429, 471, 528, 564, 567, 570, 744, 1018
Sau3AI GATC 8 cut(s) 104, 355, 536, 655, 870, 997, 1036, 1040
Sau96I GGNCC 6 cut(s) 73, 205, 206, 879, 897, 931
ScaI AGTACT 1 cut(s) 827
ScrFI CCNGG 8 cut(s) 169, 406, 600, 639, 915, 961, 980, 981
SduI GDGCHC 2 cut(s) 209, 990
SfaNI GCATC 1 cut(s) 77
SfcI CTRYAG 1 cut(s) 721
SinI GGWCC 1 cut(s) 931
SmaI CCCGGG 1 cut(s) 981
SmiMI CAYNNNNRTG 1 cut(s) 1006
SmlI CTYRAG 2 cut(s) 26, 908
SmoI CTYRAG 2 cut(s) 26, 908
SphI GCATGC 1 cut(s) 228
Sse9I AATT 3 cut(s) 290, 346, 764
SseBI AGGCCT 1 cut(s) 586
SsiI CCGC 8 cut(s) 402, 420, 456, 470, 528, 563, 1017, 1033
SspI AATATT 2 cut(s) 43, 57
StuI AGGCCT 1 cut(s) 586
StyD4I CCNGG 8 cut(s) 167, 404, 598, 637, 913, 959, 978, 979
StyI CCWWGG 1 cut(s) 617
TaaI ACNGT 1 cut(s) 556
TaiI ACGT 2 cut(s) 192, 562
TaqI TCGA 6 cut(s) 380, 388, 624, 654, 996, 1039
TasI AATT 3 cut(s) 290, 346, 764
TatI WGTACW 3 cut(s) 296, 715, 825
TauI GCSGC 4 cut(s) 473, 530, 566, 1020
TfiI GAWTC 2 cut(s) 218, 750
Tru1I TTAA 4 cut(s) 27, 39, 302, 924
Tru9I TTAA 4 cut(s) 27, 39, 302, 924
TscAI CASTG 1 cut(s) 725
TseI GCWGC 4 cut(s) 428, 566, 569, 743
TspDTI ATGAA 3 cut(s) 215, 660, 745
TspGWI ACGGA 1 cut(s) 944
TspMI CCCGGG 1 cut(s) 979
TspRI CASTG 1 cut(s) 725
Vha464I CTTAAG 1 cut(s) 26
VpaK11BI GGWCC 1 cut(s) 931
XapI RAATTY 1 cut(s) 764
XceI RCATGY 2 cut(s) 12, 228
XmaI CCCGGG 1 cut(s) 979
ZrmI AGTACT 1 cut(s) 827
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.