Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0013316

Physical Location & Seq

Genomic Coordinates Reverse (-)

23908446 .. 23910213

Gene Structure 1768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G225700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGCTTCCGCTTGGGCTTCTTCTTCTGCCATTGCAGCCGTTGCCATATCTTCTCCCAGCTCCCAGAAGGCTGGGTCTACTTTGGCAGCAACAAAGGCTTCTTTCTTTGGTGGGAGGAAGCTCAGAGTGAGGAACTTGACAGCGTCCTCTGGATCATCAACATCTTTCACAGTACGTGCTGCTGCAGCTGACCCTGATAGACCCTTGTGGTTCCCAGGCAGCACCCCTCCTCCATGGCTCGATGGAAGCCTCCCAGGAGACTTTGGCTTTGATCCCCTTGGTCTTTCATCTGACCCTGACAGCTTGAGATGGAACCAGCAAGCAGAACTTGTACACTGCAGATGGGCTATGTTAGGTGCAGCTGGCATCTTCATCCCAGAATTCTTGACCAAAATTGGCATTCTAAACACCCCTTCATGGTACACAGCTGGAGAACAAGAGTACTTCACAGACACCACCACTCTGTTTGTTGTTGAGCTGGTTTTGATTGGGTGGGCCGAGGGCAGGAGATGGGCCGACATCCTCAAGCCTGGGTCTGTTAACACCGACCCGATCTTCCCCAACAACAAGCTCACCGGGACAGATGTTGGGTACCCAGGCGGGCTTTGGTTTGACCCACTTGGATGGGGAAGTGGTTCACCTGAAAAGGTCAAGGAGCTGAGGACAAAGGAGATTAAGAATGGGAGACTGGCTATGTTGGCTGTGATGGGGGCTTGGTTCCAACACATTTACACTGGCACTGGCCCAATTGACAACCTCTTTGCTCACCTTGCTGATCCGGGCCATGCCACCATCTTTGCTGCTTTTACTCCCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 map00196

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

273

Amino Acids

29.15

Weight (kDa)

6.42

Isoelectric Point (pI)

36.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61470
fragaria_vesca	FvH4_4g23750 FvH4_4g23750
malus_domestica	MD13G1119100.v1.1 MD16G1119500.v1.1
prunus_persica	Prupe.1G225700_v2.0.a1
pyrus_communis	pycom13g10390 pycom16g10220
rosa_chinensis	RchiOBHm_Chr4g0430241
rosa_laevigata	RLG00000006992
rosa_multiflora	Rmu_sc0001089.1_g000008
rosa_roxburghii	Rroxscaffold_5G00372030
rosa_rugosa	Rorug04G0241800
rosa_samantha	Rh4AG298200 Rh4BG304800 Rh4CG320100 Rh4DG302100
rosa_wichuraiana	Rw4G025870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	591
AccB1I	GGYRCC	1 cut(s)	591
AccI	GTMKAC	1 cut(s)	77
AciI	CCGC	2 cut(s)	9, 600
AclWI	GGATC	3 cut(s)	160, 266, 770
AcsI	RAATTY	1 cut(s)	380
AfaI	GTAC	5 cut(s)	174, 333, 422, 443, 593
AfiI	CCNNNNNNNGG	2 cut(s)	417, 504
AjnI	CCWGG	4 cut(s)	214, 253, 529, 595
AluBI	AGCT	9 cut(s)	60, 121, 188, 303, 362, 428, 478, 571, 658
AluI	AGCT	9 cut(s)	60, 121, 188, 303, 362, 428, 478, 571, 658
Alw26I	GTCTC	2 cut(s)	252, 679
AlwI	GGATC	3 cut(s)	160, 266, 770
AoxI	GGCC	4 cut(s)	495, 513, 742, 781
ApeKI	GCWGC	8 cut(s)	35, 86, 179, 182, 185, 219, 359, 800
ApoI	RAATTY	1 cut(s)	380
ArsI	GACNNNNNNTTYG	4 cut(s)	251, 283, 743, 775
Asp700I	GAANNNNTTC	1 cut(s)	634
Asp718I	GGTACC	1 cut(s)	591
AspS9I	GGNCC	4 cut(s)	495, 513, 743, 781
AsuC2I	CCSGG	2 cut(s)	577, 780
AsuHPI	GGTGA	3 cut(s)	565, 630, 758
BanI	GGYRCC	1 cut(s)	591
BbvCI	CCTCAGC	1 cut(s)	659
BbvI	GCAGC	8 cut(s)	47, 98, 166, 169, 197, 231, 371, 787
BccI	CCATC	7 cut(s)	236, 303, 336, 504, 618, 700, 800
BceAI	ACGGC	1 cut(s)	23
BciT130I	CCWGG	4 cut(s)	216, 255, 531, 597
BcnI	CCSGG	2 cut(s)	577, 780
BcoDI	GTCTC	2 cut(s)	252, 679
BfmI	CTRYAG	2 cut(s)	183, 337
BisI	GCNGC	8 cut(s)	36, 87, 180, 183, 186, 220, 360, 801
BlsI	GCNGC	8 cut(s)	37, 88, 181, 184, 187, 221, 361, 802
BmcAI	AGTACT	1 cut(s)	443
Bme1390I	CCNGG	6 cut(s)	216, 255, 531, 577, 597, 780
BmgT120I	GGNCC	4 cut(s)	495, 513, 743, 781
BmiI	GGNNCC	4 cut(s)	212, 314, 593, 719
BmrFI	CCNGG	6 cut(s)	216, 255, 531, 577, 597, 780
BmsI	GCATC	1 cut(s)	375
BpmI	CTGGAG	1 cut(s)	450
Bpu10I	CCTNAGC	1 cut(s)	659
BpuEI	CTTGAG	2 cut(s)	325, 509
BpuMI	CCSGG	2 cut(s)	577, 780
BsaAI	YACGTR	1 cut(s)	176
BsaJI	CCNNGG	7 cut(s)	214, 233, 253, 277, 498, 530, 595
BsaXI	ACNNNNNCTCC	2 cut(s)	214, 244
Bsc4I	CCNNNNNNNGG	2 cut(s)	417, 504
Bse1I	ACTGG	3 cut(s)	693, 739, 745
Bse3DI	GCAATG	1 cut(s)	30
BseBI	CCWGG	4 cut(s)	216, 255, 531, 597
BseDI	CCNNGG	7 cut(s)	214, 233, 253, 277, 498, 530, 595
BseGI	GGATG	3 cut(s)	372, 519, 629
BseLI	CCNNNNNNNGG	2 cut(s)	417, 504
BseMI	GCAATG	1 cut(s)	30
BseMII	CTCAG	2 cut(s)	136, 650
BseNI	ACTGG	3 cut(s)	693, 739, 745
BseRI	GAGGAG	1 cut(s)	219
BseXI	GCAGC	8 cut(s)	47, 98, 166, 169, 197, 231, 371, 787
BseYI	CCCAGC	2 cut(s)	56, 71
BsgI	GTGCAG	1 cut(s)	378
BshFI	GGCC	4 cut(s)	497, 515, 744, 783
BshNI	GGYRCC	1 cut(s)	591
BsiSI	CCGG	2 cut(s)	576, 779
BslFI	GGGAC	1 cut(s)	592
BslI	CCNNNNNNNGG	2 cut(s)	417, 504
BsmAI	GTCTC	2 cut(s)	252, 679
BsmFI	GGGAC	1 cut(s)	592
BsmI	GAATGC	1 cut(s)	399
BsnI	GGCC	4 cut(s)	497, 515, 744, 783
Bsp1407I	TGTACA	1 cut(s)	331
Bsp143I	GATC	4 cut(s)	152, 271, 552, 775
Bsp19I	CCATGG	1 cut(s)	233
BspACI	CCGC	2 cut(s)	9, 600
BspANI	GGCC	4 cut(s)	497, 515, 744, 783
BspCNI	CTCAG	2 cut(s)	135, 651
BspLI	GGNNCC	4 cut(s)	212, 314, 593, 719
BspMAI	CTGCAG	2 cut(s)	187, 341
BspPI	GGATC	3 cut(s)	160, 266, 770
BspT107I	GGYRCC	1 cut(s)	591
BsrDI	GCAATG	1 cut(s)	30
BsrGI	TGTACA	1 cut(s)	331
BsrI	ACTGG	3 cut(s)	693, 739, 745
BssECI	CCNNGG	7 cut(s)	214, 233, 253, 277, 498, 530, 595
BssMI	GATC	4 cut(s)	152, 271, 552, 775
BssT1I	CCWWGG	2 cut(s)	233, 277
Bst2UI	CCWGG	4 cut(s)	216, 255, 531, 597
Bst4CI	ACNGT	1 cut(s)	172
BstAPI	GCANNNNNTGC	1 cut(s)	41
BstAUI	TGTACA	1 cut(s)	331
BstBAI	YACGTR	1 cut(s)	176
BstC8I	GCNNGC	3 cut(s)	321, 364, 602
BstDEI	CTNAG	2 cut(s)	122, 659
BstDSI	CCRYGG	1 cut(s)	233
BstF5I	GGATG	3 cut(s)	372, 519, 629
BstKTI	GATC	4 cut(s)	155, 274, 555, 778
BstMAI	GTCTC	2 cut(s)	252, 679
BstMBI	GATC	4 cut(s)	152, 271, 552, 775
BstMWI	GCNNNNNNNGC	6 cut(s)	35, 41, 95, 185, 698, 770
BstNI	CCWGG	4 cut(s)	216, 255, 531, 597
BstSCI	CCNGG	6 cut(s)	214, 253, 529, 575, 595, 778
BstSFI	CTRYAG	2 cut(s)	183, 337
BstV1I	GCAGC	8 cut(s)	47, 98, 166, 169, 197, 231, 371, 787
BstXI	CCANNNNNNTGG	2 cut(s)	71, 624
BsuRI	GGCC	4 cut(s)	497, 515, 744, 783
BtgI	CCRYGG	1 cut(s)	233
BtsCI	GGATG	3 cut(s)	372, 519, 629
BtsI	GCAGTG	1 cut(s)	334
BtsIMutI	CAGTG	3 cut(s)	334, 732, 738
Cac8I	GCNNGC	3 cut(s)	321, 364, 602
Cfr13I	GGNCC	4 cut(s)	495, 513, 743, 781
CseI	GACGC	1 cut(s)	132
Csp6I	GTAC	5 cut(s)	173, 332, 421, 442, 592
CspCI	CAANNNNNGTGG	4 cut(s)	448, 483, 778, 813
CviAII	CATG	3 cut(s)	234, 417, 785
CviQI	GTAC	5 cut(s)	173, 332, 421, 442, 592
DdeI	CTNAG	2 cut(s)	122, 659
DpnI	GATC	4 cut(s)	154, 273, 554, 777
DpnII	GATC	4 cut(s)	152, 271, 552, 775
Eco130I	CCWWGG	2 cut(s)	233, 277
EcoRI	GAATTC	1 cut(s)	380
EcoRII	CCWGG	4 cut(s)	214, 253, 529, 595
EcoT14I	CCWWGG	2 cut(s)	233, 277
ErhI	CCWWGG	2 cut(s)	233, 277
FaeI	CATG	3 cut(s)	237, 420, 788
FaiI	YATR	6 cut(s)	47, 235, 350, 418, 695, 786
FalI	AAGNNNNNCTT	2 cut(s)	312, 344
FaqI	GGGAC	1 cut(s)	592
FatI	CATG	3 cut(s)	233, 416, 784
FauI	CCCGC	1 cut(s)	593
FblI	GTMKAC	1 cut(s)	77
Fnu4HI	GCNGC	8 cut(s)	36, 87, 180, 183, 186, 220, 360, 801
FokI	GGATG	3 cut(s)	359, 506, 636
Fsp4HI	GCNGC	8 cut(s)	36, 87, 180, 183, 186, 220, 360, 801
GluI	GCNGC	8 cut(s)	36, 87, 180, 183, 186, 220, 360, 801
GsaI	CCCAGC	2 cut(s)	60, 75
GsuI	CTGGAG	1 cut(s)	450
HaeIII	GGCC	4 cut(s)	497, 515, 744, 783
HapII	CCGG	2 cut(s)	576, 779
HgaI	GACGC	1 cut(s)	132
Hin1II	CATG	3 cut(s)	237, 420, 788
HincII	GTYRAC	1 cut(s)	541
HindII	GTYRAC	1 cut(s)	541
HpaI	GTTAAC	1 cut(s)	541
HpaII	CCGG	2 cut(s)	576, 779
HphI	GGTGA	3 cut(s)	565, 630, 758
Hpy166II	GTNNAC	5 cut(s)	78, 334, 423, 541, 638
Hpy188I	TCNGA	2 cut(s)	125, 292
Hpy188III	TCNNGA	2 cut(s)	150, 385
Hpy8I	GTNNAC	5 cut(s)	78, 334, 423, 541, 638
HpyAV	CCTTC	2 cut(s)	61, 423
HpyCH4III	ACNGT	1 cut(s)	172
HpyCH4IV	ACGT	1 cut(s)	175
HpyCH4V	TGCA	4 cut(s)	35, 185, 339, 359
HpyF10VI	GCNNNNNNNGC	6 cut(s)	35, 41, 95, 185, 698, 770
HpyF3I	CTNAG	2 cut(s)	122, 659
HpySE526I	ACGT	1 cut(s)	175
Hsp92II	CATG	3 cut(s)	237, 420, 788
KpnI	GGTACC	1 cut(s)	595
KspAI	GTTAAC	1 cut(s)	541
Kzo9I	GATC	4 cut(s)	152, 271, 552, 775
LmnI	GCTCC	2 cut(s)	65, 655
Lsp1109I	GCAGC	8 cut(s)	47, 98, 166, 169, 197, 231, 371, 787
LweI	GCATC	1 cut(s)	375
MaeII	ACGT	1 cut(s)	175
MalI	GATC	4 cut(s)	154, 273, 554, 777
MboI	GATC	4 cut(s)	152, 271, 552, 775
MboII	GAAGA	5 cut(s)	12, 15, 42, 361, 547
MfeI	CAATTG	1 cut(s)	747
MluCI	AATT	3 cut(s)	380, 393, 747
MmeI	TCCRAC	1 cut(s)	745
MroXI	GAANNNNTTC	1 cut(s)	634
MseI	TTAA	2 cut(s)	540, 675
MslI	CAYNNNNRTG	1 cut(s)	622
MspA1I	CMGCKG	3 cut(s)	188, 362, 428
MspI	CCGG	2 cut(s)	576, 779
MspR9I	CCNGG	6 cut(s)	216, 255, 531, 577, 597, 780
MunI	CAATTG	1 cut(s)	747
Mva1269I	GAATGC	1 cut(s)	399
MvaI	CCWGG	4 cut(s)	216, 255, 531, 597
MwoI	GCNNNNNNNGC	6 cut(s)	35, 41, 95, 185, 698, 770
NciI	CCSGG	2 cut(s)	577, 780
NcoI	CCATGG	1 cut(s)	233
NdeII	GATC	4 cut(s)	152, 271, 552, 775
NlaIII	CATG	3 cut(s)	237, 420, 788
NlaIV	GGNNCC	4 cut(s)	212, 314, 593, 719
NmeAIII	GCCGAG	1 cut(s)	523
PctI	GAATGC	1 cut(s)	399
PdmI	GAANNNNTTC	1 cut(s)	634
PflFI	GACNNNGTC	1 cut(s)	142
PkrI	GCNGC	8 cut(s)	37, 88, 181, 184, 187, 221, 361, 802
Ppu21I	YACGTR	1 cut(s)	176
Psp6I	CCWGG	4 cut(s)	214, 253, 529, 595
PspFI	CCCAGC	2 cut(s)	56, 71
PspGI	CCWGG	4 cut(s)	214, 253, 529, 595
PspN4I	GGNNCC	4 cut(s)	212, 314, 593, 719
PspPI	GGNCC	4 cut(s)	495, 513, 743, 781
PstI	CTGCAG	2 cut(s)	187, 341
PsyI	GACNNNGTC	1 cut(s)	142
PvuII	CAGCTG	3 cut(s)	188, 362, 428
RsaI	GTAC	5 cut(s)	174, 333, 422, 443, 593
RsaNI	GTAC	5 cut(s)	173, 332, 421, 442, 592
RseI	CAYNNNNRTG	1 cut(s)	622
SaqAI	TTAA	2 cut(s)	540, 675
SatI	GCNGC	8 cut(s)	36, 87, 180, 183, 186, 220, 360, 801
Sau3AI	GATC	4 cut(s)	152, 271, 552, 775
Sau96I	GGNCC	4 cut(s)	495, 513, 743, 781
ScaI	AGTACT	1 cut(s)	443
ScrFI	CCNGG	6 cut(s)	216, 255, 531, 577, 597, 780
SfaNI	GCATC	1 cut(s)	375
SfcI	CTRYAG	2 cut(s)	183, 337
SmiMI	CAYNNNNRTG	1 cut(s)	622
SmlI	CTYRAG	2 cut(s)	304, 524
SmoI	CTYRAG	2 cut(s)	304, 524
Sse9I	AATT	3 cut(s)	380, 393, 747
SsiI	CCGC	2 cut(s)	9, 600
StyD4I	CCNGG	6 cut(s)	214, 253, 529, 575, 595, 778
StyI	CCWWGG	2 cut(s)	233, 277
TaaI	ACNGT	1 cut(s)	172
TaiI	ACGT	1 cut(s)	178
TaqI	TCGA	1 cut(s)	240
TasI	AATT	3 cut(s)	380, 393, 747
TatI	WGTACW	2 cut(s)	331, 441
Tru1I	TTAA	2 cut(s)	540, 675
Tru9I	TTAA	2 cut(s)	540, 675
TscAI	CASTG	3 cut(s)	341, 739, 745
TseI	GCWGC	8 cut(s)	35, 86, 179, 182, 185, 219, 359, 800
TspDTI	ATGAA	3 cut(s)	276, 361, 405
TspRI	CASTG	3 cut(s)	341, 739, 745
Tth111I	GACNNNGTC	1 cut(s)	142
XapI	RAATTY	1 cut(s)	380
XcmI	CCANNNNNNNNNTGG	1 cut(s)	603
XmiI	GTMKAC	1 cut(s)	77
XmnI	GAANNNNTTC	1 cut(s)	634
ZrmI	AGTACT	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.