Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0013316

Physical Location & Seq

Genomic Coordinates Forward (+)

8572390 .. 8574105

Gene Structure 1716 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1119500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGCCTCCGCTTGGGCTTCCTCTTCCGCCATTGCAACCTTCGCCGTATCTTCACGCTCCCAGAAGGGTGGGGCTACTTTGGCAGTGACCAAGGCTTCTTTCTTTGGTGGAAGGAAGCTGAGAGTGAGAAGCTTCACAGCACCCACCGGATCATCGTCATCTTTTACAGTACGTGCTGCTGCTGCTGACCCTGATAGACCTCTGTGGTTTCCGGGAAGCACCCCTCCACCATGGCTCGATGGAAGCCTCCCAGGAGACTTTGGCTTTGATCCGCTTGGTCTTTCATCTGACCCAGACAGCCTGAAATGGAACCAGCAAGCGGAGCTTGTACACTGCAGATGGGCAATGCTCGGCGCAGCCGGAATCTTCATCCCCGAATTCTTGACCAAAATTGGCATTCTAAACACCCCATCATGGTACACAGCCGGAGAGCAAGAGTACTTCACAGACACCACCACTCTCTTCGTCGTTGAGCTTGTTTTGATCGGGTGGGCCGAGGGAAGGAGATGGGCGGACATCCTCAAGCCCGGGTCTGTTAACACAGACCCAATCTTCCCCAACAACAAGCTCACCGGGACAGATGTTGGGTACCCGGGAGGGCTCTGGTTCGACCCACTTGGATGGGGAAGCGGCTCGCCTGAGAAGATCAAGGAGTTGAGGACAAAGGAGATCAAGAACGGAAGGCTGGCTATGTTGGCTGTGATGGGAGCTTGGTTCCAACACATTTACACTGGGACTGGCCCCATTGACAACCTCTTCGCTCACCTCGCCGATCCCGGCCATGCCACCATTTTTGTCTTTTTCCCCGAAGTGAGGAAAGAAGGAGAATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 map00196

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

278

Amino Acids

30.04

Weight (kDa)

6.1

Isoelectric Point (pI)

35.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	75 - 241	1.2e-53	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61470
fragaria_vesca	FvH4_4g23750 FvH4_4g23750
malus_domestica	MD13G1119100.v1.1 MD16G1119500.v1.1
prunus_persica	Prupe.1G225700_v2.0.a1
pyrus_communis	pycom13g10390 pycom16g10220
rosa_chinensis	RchiOBHm_Chr4g0430241
rosa_laevigata	RLG00000006992
rosa_multiflora	Rmu_sc0001089.1_g000008
rosa_roxburghii	Rroxscaffold_5G00372030
rosa_rugosa	Rorug04G0241800
rosa_samantha	Rh4AG298200 Rh4BG304800 Rh4CG320100 Rh4DG302100
rosa_wichuraiana	Rw4G025870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	588
AccB1I	GGYRCC	1 cut(s)	588
AciI	CCGC	6 cut(s)	9, 27, 272, 320, 512, 630
AclWI	GGATC	3 cut(s)	157, 263, 767
AcoI	YGGCCR	1 cut(s)	778
AcsI	RAATTY	2 cut(s)	377, 827
AfaI	GTAC	5 cut(s)	171, 330, 419, 440, 590
AfiI	CCNNNNNNNGG	5 cut(s)	12, 319, 414, 501, 813
AjnI	CCWGG	1 cut(s)	250
AjuI	GAANNNNNNNTTGG	2 cut(s)	83, 115
AluBI	AGCT	6 cut(s)	118, 132, 325, 475, 568, 710
AluI	AGCT	6 cut(s)	118, 132, 325, 475, 568, 710
Alw26I	GTCTC	1 cut(s)	249
AlwI	GGATC	3 cut(s)	157, 263, 767
Ama87I	CYCGRG	2 cut(s)	527, 592
AoxI	GGCC	4 cut(s)	3, 492, 739, 778
ApeKI	GCWGC	4 cut(s)	176, 179, 182, 356
ApoI	RAATTY	2 cut(s)	377, 827
ArsI	GACNNNNNNTTYG	4 cut(s)	248, 280, 740, 772
Asp718I	GGTACC	1 cut(s)	588
AspLEI	GCGC	1 cut(s)	356
AspS9I	GGNCC	2 cut(s)	492, 740
AsuC2I	CCSGG	7 cut(s)	213, 528, 529, 574, 593, 594, 777
AsuHPI	GGTGA	2 cut(s)	562, 755
AvaI	CYCGRG	2 cut(s)	527, 592
BanI	GGYRCC	1 cut(s)	588
BanII	GRGCYC	1 cut(s)	603
BbvI	GCAGC	4 cut(s)	163, 166, 169, 368
BccI	CCATC	6 cut(s)	233, 333, 418, 501, 615, 697
BceAI	ACGGC	1 cut(s)	29
BciT130I	CCWGG	1 cut(s)	252
BcnI	CCSGG	7 cut(s)	213, 528, 529, 574, 593, 594, 777
BcoDI	GTCTC	1 cut(s)	249
BfmI	CTRYAG	1 cut(s)	334
BisI	GCNGC	5 cut(s)	177, 180, 183, 357, 631
BlsI	GCNGC	5 cut(s)	178, 181, 184, 358, 632
BmcAI	AGTACT	1 cut(s)	440
Bme1390I	CCNGG	8 cut(s)	213, 252, 528, 529, 574, 593, 594, 777
BmeT110I	CYCGRG	2 cut(s)	527, 592
BmgT120I	GGNCC	2 cut(s)	492, 740
BmiI	GGNNCC	4 cut(s)	311, 590, 716, 742
BmrFI	CCNGG	8 cut(s)	213, 252, 528, 529, 574, 593, 594, 777
BmrI	ACTGGG	1 cut(s)	741
BmuI	ACTGGG	1 cut(s)	741
BpuEI	CTTGAG	1 cut(s)	506
BpuMI	CCSGG	7 cut(s)	213, 528, 529, 574, 593, 594, 777
BsaAI	YACGTR	1 cut(s)	173
BsaJI	CCNNGG	6 cut(s)	90, 230, 250, 495, 527, 592
BsaWI	WCCGGW	1 cut(s)	146
Bsc4I	CCNNNNNNNGG	5 cut(s)	12, 319, 414, 501, 813
Bse1I	ACTGG	2 cut(s)	736, 742
Bse3DI	GCAATG	2 cut(s)	30, 351
BseBI	CCWGG	1 cut(s)	252
BseDI	CCNNGG	6 cut(s)	90, 230, 250, 495, 527, 592
BseGI	GGATG	3 cut(s)	369, 516, 626
BseLI	CCNNNNNNNGG	5 cut(s)	12, 319, 414, 501, 813
BseMI	GCAATG	2 cut(s)	30, 351
BseMII	CTCAG	2 cut(s)	110, 630
BseNI	ACTGG	2 cut(s)	736, 742
BseXI	GCAGC	4 cut(s)	163, 166, 169, 368
BshFI	GGCC	4 cut(s)	5, 494, 741, 780
BshNI	GGYRCC	1 cut(s)	588
BsiHKCI	CYCGRG	2 cut(s)	527, 592
BsiSI	CCGG	8 cut(s)	147, 212, 360, 426, 528, 573, 593, 777
BslFI	GGGAC	2 cut(s)	589, 748
BslI	CCNNNNNNNGG	5 cut(s)	12, 319, 414, 501, 813
BsmAI	GTCTC	1 cut(s)	249
BsmFI	GGGAC	2 cut(s)	589, 748
BsmI	GAATGC	1 cut(s)	396
BsnI	GGCC	4 cut(s)	5, 494, 741, 780
BsoBI	CYCGRG	2 cut(s)	527, 592
Bsp1286I	GDGCHC	1 cut(s)	603
Bsp1407I	TGTACA	1 cut(s)	328
Bsp143I	GATC	6 cut(s)	149, 268, 483, 645, 669, 772
Bsp19I	CCATGG	1 cut(s)	230
BspACI	CCGC	6 cut(s)	9, 27, 272, 320, 512, 630
BspANI	GGCC	4 cut(s)	5, 494, 741, 780
BspCNI	CTCAG	2 cut(s)	111, 631
BspLI	GGNNCC	4 cut(s)	311, 590, 716, 742
BspMAI	CTGCAG	1 cut(s)	338
BspPI	GGATC	3 cut(s)	157, 263, 767
BspT107I	GGYRCC	1 cut(s)	588
BsrDI	GCAATG	2 cut(s)	30, 351
BsrGI	TGTACA	1 cut(s)	328
BsrI	ACTGG	2 cut(s)	736, 742
BssECI	CCNNGG	6 cut(s)	90, 230, 250, 495, 527, 592
BssMI	GATC	6 cut(s)	149, 268, 483, 645, 669, 772
BssT1I	CCWWGG	2 cut(s)	90, 230
Bst2UI	CCWGG	1 cut(s)	252
Bst4CI	ACNGT	1 cut(s)	169
Bst6I	CTCTTC	3 cut(s)	28, 467, 761
BstAUI	TGTACA	1 cut(s)	328
BstBAI	YACGTR	1 cut(s)	173
BstC8I	GCNNGC	3 cut(s)	318, 635, 687
BstDEI	CTNAG	2 cut(s)	119, 639
BstDSI	CCRYGG	1 cut(s)	230
BstF5I	GGATG	3 cut(s)	369, 516, 626
BstHHI	GCGC	1 cut(s)	356
BstKTI	GATC	6 cut(s)	152, 271, 486, 648, 672, 775
BstMAI	GTCTC	1 cut(s)	249
BstMBI	GATC	6 cut(s)	149, 268, 483, 645, 669, 772
BstMWI	GCNNNNNNNGC	6 cut(s)	41, 80, 182, 322, 695, 767
BstNI	CCWGG	1 cut(s)	252
BstSCI	CCNGG	8 cut(s)	211, 250, 526, 527, 572, 591, 592, 775
BstSFI	CTRYAG	1 cut(s)	334
BstV1I	GCAGC	4 cut(s)	163, 166, 169, 368
BstXI	CCANNNNNNTGG	2 cut(s)	68, 621
BsuRI	GGCC	4 cut(s)	5, 494, 741, 780
BtgI	CCRYGG	1 cut(s)	230
BtsCI	GGATG	3 cut(s)	369, 516, 626
BtsI	GCAGTG	2 cut(s)	90, 331
BtsIMutI	CAGTG	3 cut(s)	90, 331, 729
Cac8I	GCNNGC	3 cut(s)	318, 635, 687
CfoI	GCGC	1 cut(s)	356
Cfr13I	GGNCC	2 cut(s)	492, 740
Cfr9I	CCCGGG	2 cut(s)	527, 592
Csp6I	GTAC	5 cut(s)	170, 329, 418, 439, 589
CspCI	CAANNNNNGTGG	2 cut(s)	775, 810
CviAII	CATG	3 cut(s)	231, 414, 782
CviQI	GTAC	5 cut(s)	170, 329, 418, 439, 589
DdeI	CTNAG	2 cut(s)	119, 639
DpnI	GATC	6 cut(s)	151, 270, 485, 647, 671, 774
DpnII	GATC	6 cut(s)	149, 268, 483, 645, 669, 772
EaeI	YGGCCR	1 cut(s)	778
Eam1104I	CTCTTC	3 cut(s)	28, 467, 761
EarI	CTCTTC	3 cut(s)	28, 467, 761
EciI	GGCGGA	2 cut(s)	16, 527
Eco130I	CCWWGG	2 cut(s)	90, 230
Eco24I	GRGCYC	1 cut(s)	603
Eco88I	CYCGRG	2 cut(s)	527, 592
EcoRI	GAATTC	2 cut(s)	377, 827
EcoRII	CCWGG	1 cut(s)	250
EcoT14I	CCWWGG	2 cut(s)	90, 230
EcoT38I	GRGCYC	1 cut(s)	603
ErhI	CCWWGG	2 cut(s)	90, 230
FaeI	CATG	3 cut(s)	234, 417, 785
FaiI	YATR	4 cut(s)	232, 415, 692, 783
FalI	AAGNNNNNCTT	2 cut(s)	309, 341
FaqI	GGGAC	2 cut(s)	589, 748
FatI	CATG	3 cut(s)	230, 413, 781
Fnu4HI	GCNGC	5 cut(s)	177, 180, 183, 357, 631
FokI	GGATG	3 cut(s)	356, 503, 633
FriOI	GRGCYC	1 cut(s)	603
Fsp4HI	GCNGC	5 cut(s)	177, 180, 183, 357, 631
GlaI	GCGC	1 cut(s)	355
GluI	GCNGC	5 cut(s)	177, 180, 183, 357, 631
HaeIII	GGCC	4 cut(s)	5, 494, 741, 780
HapII	CCGG	8 cut(s)	147, 212, 360, 426, 528, 573, 593, 777
HhaI	GCGC	1 cut(s)	356
Hin1II	CATG	3 cut(s)	234, 417, 785
Hin6I	GCGC	1 cut(s)	354
HinP1I	GCGC	1 cut(s)	354
HincII	GTYRAC	1 cut(s)	538
HindII	GTYRAC	1 cut(s)	538
HindIII	AAGCTT	1 cut(s)	130
HinfI	GANTC	1 cut(s)	363
HpaI	GTTAAC	1 cut(s)	538
HpaII	CCGG	8 cut(s)	147, 212, 360, 426, 528, 573, 593, 777
HphI	GGTGA	2 cut(s)	562, 755
Hpy166II	GTNNAC	3 cut(s)	331, 420, 538
Hpy188I	TCNGA	1 cut(s)	289
Hpy188III	TCNNGA	2 cut(s)	382, 673
Hpy8I	GTNNAC	3 cut(s)	331, 420, 538
Hpy99I	CGWCG	1 cut(s)	470
HpyAV	CCTTC	6 cut(s)	49, 58, 105, 495, 675, 815
HpyCH4III	ACNGT	1 cut(s)	169
HpyCH4IV	ACGT	1 cut(s)	172
HpyCH4V	TGCA	2 cut(s)	35, 336
HpyF10VI	GCNNNNNNNGC	6 cut(s)	41, 80, 182, 322, 695, 767
HpyF3I	CTNAG	2 cut(s)	119, 639
HpySE526I	ACGT	1 cut(s)	172
Hsp92II	CATG	3 cut(s)	234, 417, 785
HspAI	GCGC	1 cut(s)	354
KpnI	GGTACC	1 cut(s)	592
KspAI	GTTAAC	1 cut(s)	538
Kzo9I	GATC	6 cut(s)	149, 268, 483, 645, 669, 772
LmnI	GCTCC	3 cut(s)	62, 322, 707
Lsp1109I	GCAGC	4 cut(s)	163, 166, 169, 368
MaeII	ACGT	1 cut(s)	172
MaeIII	GTNAC	1 cut(s)	85
MalI	GATC	6 cut(s)	151, 270, 485, 647, 671, 774
MboI	GATC	6 cut(s)	149, 268, 483, 645, 669, 772
MboII	GAAGA	7 cut(s)	15, 42, 358, 454, 544, 655, 748
MhlI	GDGCHC	1 cut(s)	603
MluCI	AATT	3 cut(s)	377, 390, 827
MmeI	TCCRAC	1 cut(s)	742
MseI	TTAA	1 cut(s)	537
MslI	CAYNNNNRTG	1 cut(s)	619
MspI	CCGG	8 cut(s)	147, 212, 360, 426, 528, 573, 593, 777
MspR9I	CCNGG	8 cut(s)	213, 252, 528, 529, 574, 593, 594, 777
Mva1269I	GAATGC	1 cut(s)	396
MvaI	CCWGG	1 cut(s)	252
MwoI	GCNNNNNNNGC	6 cut(s)	41, 80, 182, 322, 695, 767
NciI	CCSGG	7 cut(s)	213, 528, 529, 574, 593, 594, 777
NcoI	CCATGG	1 cut(s)	230
NdeII	GATC	6 cut(s)	149, 268, 483, 645, 669, 772
NlaIII	CATG	3 cut(s)	234, 417, 785
NlaIV	GGNNCC	4 cut(s)	311, 590, 716, 742
NmeAIII	GCCGAG	2 cut(s)	330, 520
NmuCI	GTSAC	1 cut(s)	85
PcsI	WCGNNNNNNNCGW	1 cut(s)	492
PctI	GAATGC	1 cut(s)	396
PfeI	GAWTC	1 cut(s)	363
PfoI	TCCNGGA	1 cut(s)	211
PkrI	GCNGC	5 cut(s)	178, 181, 184, 358, 632
Ppu21I	YACGTR	1 cut(s)	173
Psp6I	CCWGG	1 cut(s)	250
PspGI	CCWGG	1 cut(s)	250
PspN4I	GGNNCC	4 cut(s)	311, 590, 716, 742
PspPI	GGNCC	2 cut(s)	492, 740
PstI	CTGCAG	1 cut(s)	338
RsaI	GTAC	5 cut(s)	171, 330, 419, 440, 590
RsaNI	GTAC	5 cut(s)	170, 329, 418, 439, 589
RseI	CAYNNNNRTG	1 cut(s)	619
SaqAI	TTAA	1 cut(s)	537
SatI	GCNGC	5 cut(s)	177, 180, 183, 357, 631
Sau3AI	GATC	6 cut(s)	149, 268, 483, 645, 669, 772
Sau96I	GGNCC	2 cut(s)	492, 740
ScaI	AGTACT	1 cut(s)	440
ScrFI	CCNGG	8 cut(s)	213, 252, 528, 529, 574, 593, 594, 777
SduI	GDGCHC	1 cut(s)	603
SfcI	CTRYAG	1 cut(s)	334
SmaI	CCCGGG	2 cut(s)	529, 594
SmiMI	CAYNNNNRTG	1 cut(s)	619
SmlI	CTYRAG	1 cut(s)	521
SmoI	CTYRAG	1 cut(s)	521
Sse9I	AATT	3 cut(s)	377, 390, 827
SsiI	CCGC	6 cut(s)	9, 27, 272, 320, 512, 630
StyD4I	CCNGG	8 cut(s)	211, 250, 526, 527, 572, 591, 592, 775
StyI	CCWWGG	2 cut(s)	90, 230
TaaI	ACNGT	1 cut(s)	169
TaiI	ACGT	1 cut(s)	175
TaqI	TCGA	2 cut(s)	237, 609
TasI	AATT	3 cut(s)	377, 390, 827
TatI	WGTACW	2 cut(s)	328, 438
TauI	GCSGC	1 cut(s)	633
TfiI	GAWTC	1 cut(s)	363
Tru1I	TTAA	1 cut(s)	537
Tru9I	TTAA	1 cut(s)	537
TscAI	CASTG	3 cut(s)	90, 338, 736
TseFI	GTSAC	1 cut(s)	85
TseI	GCWGC	4 cut(s)	176, 179, 182, 356
Tsp45I	GTSAC	1 cut(s)	85
TspDTI	ATGAA	2 cut(s)	273, 358
TspGWI	ACGGA	1 cut(s)	693
TspMI	CCCGGG	2 cut(s)	527, 592
TspRI	CASTG	3 cut(s)	90, 338, 736
XapI	RAATTY	2 cut(s)	377, 827
XmaI	CCCGGG	2 cut(s)	527, 592
ZrmI	AGTACT	1 cut(s)	440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.