Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006718

Physical Location & Seq

Genomic Coordinates Forward (+)

22791898 .. 22794710

Gene Structure 2813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G61590.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGGAAGCAGAAACGTCTTGGACCAATTATCCGTACAGCTACATTACATATGTCCCTGAAGCTGAATCATACCGTGAGCAGAGCGACGATGAAGCCAAAGTCGAAACCTTTTCAATGGATTCTCTTCTCCCTGACGATTTATTAGAACGAATCCTCTCGTTTCTACCCATTGCAAGCATCTTCAGAGCTGGTACTGTCTGCAAAAGATGGAACGAGATTGTATCTTCTCGGAGGTTCTTATGTAATTTCTCCAACAATTCGGTTTCCCAAAGGCCTTGGTACTTCATGTTCACTACCACGGATGATCCATCTGGTTATGCTTATGACCCCATTATCCGCAAATGGTACAGTTTCGATCTCCCTTGTATCGAAACATCCAATTGGTTTGTTGCTTCCTCTTGTGGATTGGTTTGCTTCATGGACAATGATTGCAGAAACAAGATTTATGTCTCAAATCCAATTACCAAACAATGGAGGACGCTTATTGAACCTCCTGGTCACAAATCGACAGATTACACGGCAATGTCTACCTCCGTAAACCGAGCGAACCAAGCAGTAAACCGCGCAAACCGGAGTTACTCAGTCTCGATAGTGAAATCGAAGCAAGTTCCAGGGAATTTCTTCCAATGGGATCTCTCTATTCATCTCTACAGCTCTGAAACAATGACTTGGACAACATTAGTAAACGATGTCTTATCCGGATGGAGAGGAGGGAACGAGAGTGTGATCTGCAACAATGTTCTTTACTTCATGATATACTCAACGGGAGGCTCAGATCATCGCCACGGCTTGATCGCTTCGAATCTATCCTCGATAGGATCACCGTCAAGCGGAATCTTGATGAGGAGTTTCATTCCAATGCCGTGTTCTTTAACCTGCGGGAGATTGATGAATCTAAGAGAGAGGCTTGTGATTGTCGGAGGAATCGGGAAACATGATCGACCAGAGGTTATAAAAGGGATAGGGATTTGGGTTTTGAAAGGGAAGGAATGGGTAGAGATGGCGAAAATGCCTCAAAGATTCTTCCAAGGTTTTGGTGAATTCGACGAGGTTTTCGCGAGTAGTGGCACGGATGATTTGGTTTACATTCAAAGCTATGGATCTCCCGCGCTTCTCACGTTCGACATGAATCTCAAGTATTGGAGATGGTCTCAGAAATGTCCTGTTACTAAAAAGTTCCCTCTTCAGCTCTTTACTGGGTTTTGCTTCGAACCAAGACTCGAGATTGCTCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048731 GO:0048856 GO:0070647 GO:0071704 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

411

Amino Acids

46.97

Weight (kDa)

6.54

Isoelectric Point (pI)

43.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	49 - 89	3.8e-11	F-box domain
F-box-like	PF12937	50 - 85	3.3e-10	F-box-like
b-prop_At3g26010-like	PF24750	136 - 274	5.3e-12	F-box protein At3g26010-like, beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006718)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61590 AT3G61590 AT3G61590 AT3G61590
fragaria_vesca	FvH4_7g15730 FvH4_7g15730 FvH4_7g15730
malus_domestica	MD01G1073800.v1.1 MD07G1142500.v1.1
prunus_persica	Prupe.2G181900_v2.0.a1 Prupe.2G181900_v2.0.a1
pyrus_communis	pycom01g10300 pycom07g14130
rosa_chinensis	RchiOBHm_Chr1g0358441
rosa_laevigata	RLG00000002357 RLG00000027959
rosa_multiflora	Rmu_co8469433.1_g000001 Rmu_sc0008220.1_g000002
rosa_roxburghii	Rroxscaffold_4G00297920
rosa_rugosa	Rorug01G0262000
rosa_samantha	Rh1AG276300 Rh1BG242900 Rh1CG260000 Rh1DG271300
rosa_wichuraiana	Rw1G024590 Rw7G028420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	953
Acc36I	ACCTGC	1 cut(s)	884
AccB7I	CCANNNNNTGG	1 cut(s)	471
AccI	GTMKAC	1 cut(s)	527
AccII	CGCG	3 cut(s)	564, 1058, 1109
AccIII	TCCGGA	1 cut(s)	698
AciI	CCGC	5 cut(s)	337, 562, 831, 879, 1107
AclWI	GGATC	4 cut(s)	299, 639, 826, 1108
AcsI	RAATTY	2 cut(s)	616, 1040
AcuI	CTGAAG	3 cut(s)	78, 166, 1169
AfaI	GTAC	4 cut(s)	35, 193, 281, 347
AfiI	CCNNNNNNNGG	2 cut(s)	471, 830
AgsI	TTSAA	4 cut(s)	114, 488, 979, 1091
AjnI	CCWGG	2 cut(s)	493, 610
AjuI	GAANNNNNNNTTGG	2 cut(s)	850, 882
AluBI	AGCT	6 cut(s)	39, 62, 188, 654, 1095, 1189
AluI	AGCT	6 cut(s)	39, 62, 188, 654, 1095, 1189
Alw26I	GTCTC	3 cut(s)	454, 589, 1155
AlwI	GGATC	4 cut(s)	299, 639, 826, 1108
Ama87I	CYCGRG	1 cut(s)	1220
Aor13HI	TCCGGA	1 cut(s)	698
AoxI	GGCC	1 cut(s)	272
ApoI	RAATTY	2 cut(s)	616, 1040
ArsI	GACNNNNNNTTYG	2 cut(s)	1037, 1069
Asp700I	GAANNNNTTC	1 cut(s)	620
AspLEI	GCGC	2 cut(s)	566, 1111
AspS9I	GGNCC	1 cut(s)	21
AsuHPI	GGTGA	2 cut(s)	813, 1049
AsuII	TTCGAA	2 cut(s)	800, 1209
AvaI	CYCGRG	1 cut(s)	1220
AvaII	GGWCC	1 cut(s)	21
BccI	CCATC	5 cut(s)	201, 316, 696, 994, 1140
BceAI	ACGGC	3 cut(s)	534, 802, 847
BciT130I	CCWGG	2 cut(s)	495, 612
BcoDI	GTCTC	3 cut(s)	454, 589, 1155
BfmI	CTRYAG	1 cut(s)	649
BfuAI	ACCTGC	1 cut(s)	884
Bme1390I	CCNGG	2 cut(s)	495, 612
Bme18I	GGWCC	1 cut(s)	21
BmeT110I	CYCGRG	1 cut(s)	1220
BmgT120I	GGNCC	1 cut(s)	21
BmrFI	CCNGG	2 cut(s)	495, 612
BmrI	ACTGGG	1 cut(s)	1206
BmsI	GCATC	1 cut(s)	186
BmuI	ACTGGG	1 cut(s)	1206
BplI	GAGNNNNNCTC	2 cut(s)	1135, 1167
Bpu14I	TTCGAA	2 cut(s)	800, 1209
BpuEI	CTTGAG	1 cut(s)	1118
BsaI	GGTCTC	1 cut(s)	1155
BsaJI	CCNNGG	5 cut(s)	275, 297, 611, 784, 1027
BsaWI	WCCGGW	2 cut(s)	570, 698
Bsc4I	CCNNNNNNNGG	2 cut(s)	471, 830
Bse1I	ACTGG	1 cut(s)	1201
Bse3DI	GCAATG	2 cut(s)	168, 528
BseAI	TCCGGA	1 cut(s)	698
BseBI	CCWGG	2 cut(s)	495, 612
BseDI	CCNNGG	5 cut(s)	275, 297, 611, 784, 1027
BseGI	GGATG	4 cut(s)	307, 374, 707, 1078
BseLI	CCNNNNNNNGG	2 cut(s)	471, 830
BseMI	GCAATG	2 cut(s)	168, 528
BseMII	CTCAG	3 cut(s)	594, 786, 1166
BseNI	ACTGG	1 cut(s)	1201
BseRI	GAGGAG	2 cut(s)	723, 859
Bsh1236I	CGCG	3 cut(s)	564, 1058, 1109
BshFI	GGCC	1 cut(s)	274
BsiHKCI	CYCGRG	1 cut(s)	1220
BsiSI	CCGG	2 cut(s)	571, 699
BslFI	GGGAC	1 cut(s)	38
BslI	CCNNNNNNNGG	2 cut(s)	471, 830
BsmAI	GTCTC	3 cut(s)	454, 589, 1155
BsmFI	GGGAC	1 cut(s)	38
BsnI	GGCC	1 cut(s)	274
Bso31I	GGTCTC	1 cut(s)	1155
BsoBI	CYCGRG	1 cut(s)	1220
Bsp119I	TTCGAA	2 cut(s)	800, 1209
Bsp13I	TCCGGA	1 cut(s)	698
Bsp143I	GATC	9 cut(s)	304, 355, 631, 726, 775, 792, 818, 937, 1100
Bsp68I	TCGCGA	1 cut(s)	1058
BspACI	CCGC	5 cut(s)	337, 562, 831, 879, 1107
BspANI	GGCC	1 cut(s)	274
BspCNI	CTCAG	3 cut(s)	593, 785, 1165
BspEI	TCCGGA	1 cut(s)	698
BspFNI	CGCG	3 cut(s)	564, 1058, 1109
BspHI	TCATGA	1 cut(s)	750
BspMI	ACCTGC	1 cut(s)	884
BspPI	GGATC	4 cut(s)	299, 639, 826, 1108
BspT104I	TTCGAA	2 cut(s)	800, 1209
BspTNI	GGTCTC	1 cut(s)	1155
BsrDI	GCAATG	2 cut(s)	168, 528
BsrI	ACTGG	1 cut(s)	1201
BssECI	CCNNGG	5 cut(s)	275, 297, 611, 784, 1027
BssMI	GATC	9 cut(s)	304, 355, 631, 726, 775, 792, 818, 937, 1100
BssT1I	CCWWGG	2 cut(s)	275, 1027
Bst2UI	CCWGG	2 cut(s)	495, 612
Bst4CI	ACNGT	4 cut(s)	74, 196, 350, 825
Bst6I	CTCTTC	2 cut(s)	129, 1188
BstBI	TTCGAA	2 cut(s)	800, 1209
BstC8I	GCNNGC	1 cut(s)	175
BstDEI	CTNAG	5 cut(s)	580, 772, 896, 1152, 1233
BstDSI	CCRYGG	2 cut(s)	297, 784
BstF5I	GGATG	4 cut(s)	307, 374, 707, 1078
BstFNI	CGCG	3 cut(s)	564, 1058, 1109
BstHHI	GCGC	2 cut(s)	566, 1111
BstKTI	GATC	9 cut(s)	307, 358, 634, 729, 778, 795, 821, 940, 1103
BstMAI	GTCTC	3 cut(s)	454, 589, 1155
BstMBI	GATC	9 cut(s)	304, 355, 631, 726, 775, 792, 818, 937, 1100
BstMWI	GCNNNNNNNGC	1 cut(s)	551
BstNI	CCWGG	2 cut(s)	495, 612
BstSCI	CCNGG	2 cut(s)	493, 610
BstSFI	CTRYAG	1 cut(s)	649
BstUI	CGCG	3 cut(s)	564, 1058, 1109
BstX2I	RGATCY	2 cut(s)	631, 1100
BstXI	CCANNNNNNTGG	1 cut(s)	1034
BstYI	RGATCY	2 cut(s)	631, 1100
BsuRI	GGCC	1 cut(s)	274
BtgI	CCRYGG	2 cut(s)	297, 784
BtgZI	GCGATG	1 cut(s)	764
BtsCI	GGATG	4 cut(s)	307, 374, 707, 1078
BtuMI	TCGCGA	1 cut(s)	1058
BveI	ACCTGC	1 cut(s)	884
Cac8I	GCNNGC	1 cut(s)	175
CciI	TCATGA	1 cut(s)	750
CfoI	GCGC	2 cut(s)	566, 1111
Cfr13I	GGNCC	1 cut(s)	21
CseI	GACGC	1 cut(s)	487
Csp6I	GTAC	4 cut(s)	34, 192, 280, 346
CviAII	CATG	5 cut(s)	286, 418, 751, 935, 1126
CviQI	GTAC	4 cut(s)	34, 192, 280, 346
DdeI	CTNAG	5 cut(s)	580, 772, 896, 1152, 1233
DpnI	GATC	9 cut(s)	306, 357, 633, 728, 777, 794, 820, 939, 1102
DpnII	GATC	9 cut(s)	304, 355, 631, 726, 775, 792, 818, 937, 1100
Eam1104I	CTCTTC	2 cut(s)	129, 1188
EarI	CTCTTC	2 cut(s)	129, 1188
Eco130I	CCWWGG	2 cut(s)	275, 1027
Eco147I	AGGCCT	1 cut(s)	274
Eco31I	GGTCTC	1 cut(s)	1155
Eco47I	GGWCC	1 cut(s)	21
Eco57I	CTGAAG	3 cut(s)	78, 166, 1169
Eco88I	CYCGRG	1 cut(s)	1220
EcoRI	GAATTC	1 cut(s)	1040
EcoRII	CCWGG	2 cut(s)	493, 610
EcoT14I	CCWWGG	2 cut(s)	275, 1027
ErhI	CCWWGG	2 cut(s)	275, 1027
FaeI	CATG	5 cut(s)	289, 421, 754, 938, 1129
FaqI	GGGAC	1 cut(s)	38
FatI	CATG	5 cut(s)	285, 417, 750, 934, 1125
FauI	CCCGC	2 cut(s)	872, 1114
FauNDI	CATATG	1 cut(s)	49
FblI	GTMKAC	1 cut(s)	527
FokI	GGATG	4 cut(s)	314, 361, 714, 1085
GlaI	GCGC	2 cut(s)	565, 1110
HaeIII	GGCC	1 cut(s)	274
HapII	CCGG	2 cut(s)	571, 699
HgaI	GACGC	1 cut(s)	487
HhaI	GCGC	2 cut(s)	566, 1111
Hin1II	CATG	5 cut(s)	289, 421, 754, 938, 1129
Hin6I	GCGC	2 cut(s)	564, 1109
HinP1I	GCGC	2 cut(s)	564, 1109
HpaII	CCGG	2 cut(s)	571, 699
HphI	GGTGA	2 cut(s)	813, 1049
Hpy166II	GTNNAC	6 cut(s)	291, 528, 538, 559, 685, 1084
Hpy188I	TCNGA	6 cut(s)	185, 231, 658, 775, 920, 1155
Hpy188III	TCNNGA	7 cut(s)	586, 699, 751, 838, 928, 1057, 1222
Hpy8I	GTNNAC	6 cut(s)	291, 528, 538, 559, 685, 1084
Hpy99I	CGWCG	2 cut(s)	89, 1049
HpyAV	CCTTC	1 cut(s)	979
HpyCH4III	ACNGT	4 cut(s)	74, 196, 350, 825
HpyCH4IV	ACGT	2 cut(s)	14, 1118
HpyCH4V	TGCA	4 cut(s)	173, 201, 432, 732
HpyF10VI	GCNNNNNNNGC	1 cut(s)	551
HpyF3I	CTNAG	5 cut(s)	580, 772, 896, 1152, 1233
HpySE526I	ACGT	2 cut(s)	14, 1118
Hsp92II	CATG	5 cut(s)	289, 421, 754, 938, 1129
HspAI	GCGC	2 cut(s)	564, 1109
Kpn2I	TCCGGA	1 cut(s)	698
Kzo9I	GATC	9 cut(s)	304, 355, 631, 726, 775, 792, 818, 937, 1100
LmnI	GCTCC	1 cut(s)	1234
LweI	GCATC	1 cut(s)	186
MaeII	ACGT	2 cut(s)	14, 1118
MaeIII	GTNAC	3 cut(s)	497, 575, 1165
MalI	GATC	9 cut(s)	306, 357, 633, 728, 777, 794, 820, 939, 1102
MboI	GATC	9 cut(s)	304, 355, 631, 726, 775, 792, 818, 937, 1100
MboII	GAAGA	6 cut(s)	116, 172, 216, 613, 1015, 1175
MfeI	CAATTG	1 cut(s)	379
MflI	RGATCY	2 cut(s)	631, 1100
MluCI	AATT	7 cut(s)	25, 244, 256, 379, 459, 616, 1040
MlyI	GAGTC	1 cut(s)	1212
MmeI	TCCRAC	2 cut(s)	276, 898
MroI	TCCGGA	1 cut(s)	698
MroXI	GAANNNNTTC	1 cut(s)	620
MseI	TTAA	1 cut(s)	872
MslI	CAYNNNNRTG	2 cut(s)	521, 857
MspI	CCGG	2 cut(s)	571, 699
MspR9I	CCNGG	2 cut(s)	495, 612
MunI	CAATTG	1 cut(s)	379
MvaI	CCWGG	2 cut(s)	495, 612
MvnI	CGCG	3 cut(s)	564, 1058, 1109
MwoI	GCNNNNNNNGC	1 cut(s)	551
NdeI	CATATG	1 cut(s)	49
NdeII	GATC	9 cut(s)	304, 355, 631, 726, 775, 792, 818, 937, 1100
NlaIII	CATG	5 cut(s)	289, 421, 754, 938, 1129
NmuCI	GTSAC	1 cut(s)	497
NruI	TCGCGA	1 cut(s)	1058
NspV	TTCGAA	2 cut(s)	800, 1209
PaeR7I	CTCGAG	1 cut(s)	1220
PagI	TCATGA	1 cut(s)	750
PceI	AGGCCT	1 cut(s)	274
PdmI	GAANNNNTTC	1 cut(s)	620
PfeI	GAWTC	9 cut(s)	65, 119, 150, 802, 834, 892, 924, 1020, 1129
PflMI	CCANNNNNTGG	1 cut(s)	471
PleI	GAGTC	1 cut(s)	1212
PpsI	GAGTC	1 cut(s)	1212
PsiI	TTATAA	1 cut(s)	953
Psp6I	CCWGG	2 cut(s)	493, 610
PspGI	CCWGG	2 cut(s)	493, 610
PspPI	GGNCC	1 cut(s)	21
PsrI	GAACNNNNNNTAC	2 cut(s)	272, 304
PsuI	RGATCY	2 cut(s)	631, 1100
RruI	TCGCGA	1 cut(s)	1058
RsaI	GTAC	4 cut(s)	35, 193, 281, 347
RsaNI	GTAC	4 cut(s)	34, 192, 280, 346
RseI	CAYNNNNRTG	2 cut(s)	521, 857
SaqAI	TTAA	1 cut(s)	872
Sau3AI	GATC	9 cut(s)	304, 355, 631, 726, 775, 792, 818, 937, 1100
Sau96I	GGNCC	1 cut(s)	21
SchI	GAGTC	1 cut(s)	1212
ScrFI	CCNGG	2 cut(s)	495, 612
SfaNI	GCATC	1 cut(s)	186
SfcI	CTRYAG	1 cut(s)	649
Sfr274I	CTCGAG	1 cut(s)	1220
SfuI	TTCGAA	2 cut(s)	800, 1209
SinI	GGWCC	1 cut(s)	21
SlaI	CTCGAG	1 cut(s)	1220
SmiMI	CAYNNNNRTG	2 cut(s)	521, 857
SmlI	CTYRAG	2 cut(s)	1133, 1220
SmoI	CTYRAG	2 cut(s)	1133, 1220
Sse9I	AATT	7 cut(s)	25, 244, 256, 379, 459, 616, 1040
SseBI	AGGCCT	1 cut(s)	274
SsiI	CCGC	5 cut(s)	337, 562, 831, 879, 1107
StuI	AGGCCT	1 cut(s)	274
StyD4I	CCNGG	2 cut(s)	493, 610
StyI	CCWWGG	2 cut(s)	275, 1027
TaaI	ACNGT	4 cut(s)	74, 196, 350, 825
TaiI	ACGT	2 cut(s)	17, 1121
TasI	AATT	7 cut(s)	25, 244, 256, 379, 459, 616, 1040
TfiI	GAWTC	9 cut(s)	65, 119, 150, 802, 834, 892, 924, 1020, 1129
Tru1I	TTAA	1 cut(s)	872
Tru9I	TTAA	1 cut(s)	872
TseFI	GTSAC	1 cut(s)	497
Tsp45I	GTSAC	1 cut(s)	497
TspDTI	ATGAA	8 cut(s)	105, 274, 406, 632, 739, 841, 905, 1142
TspGWI	ACGGA	4 cut(s)	21, 314, 523, 1085
Van91I	CCANNNNNTGG	1 cut(s)	471
VpaK11BI	GGWCC	1 cut(s)	21
XapI	RAATTY	2 cut(s)	616, 1040
XhoI	CTCGAG	1 cut(s)	1220
XmiI	GTMKAC	1 cut(s)	527
XmnI	GAANNNNTTC	1 cut(s)	620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.