Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0006718

Physical Location & Seq

Genomic Coordinates Forward (+)

16027509 .. 16028726

Gene Structure 1218 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g14130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGGAGGGAGAAACGTCGTGGTTTAGCCATTCCTTTGATAACATGGCAAGGCGGACTACAGAGTATGATTCATTCTCAGAGCTCAGTGATGAAGGAAATAGAGAAGCTAATGCAGTTTCAGTGGATTTGATACTTCCTGATGACCTGTTGGAACGGATATTAGCATATCTACCAGTTGCCAGCATTTTCAGAGCACGTAGTGTGTGCAAAAGGTGGTATGAGATTCTCAATTCAAGAAGGTTTATGTGGAACTTTTCGCACGTGCTATCACAAAAGCCTTGGTATTTTATGTTTACCAGCTCCAATGATCCAACTGGTTATGCATATGATCCTATCCTCAGGAAGTGGTATGGCATTGAGCTCCCCTGCATTGAGACATCCAATTGGTTTATTGCTTCATCATGCGGTTTGGTATGCTTTATGGACAACGACAGTAGAACAGAATTATATGTCTGCAACCCTATTACCAAAACATGTAGGAAGCTTCAGGAGCCCCCTGGCTTGAAATTTTCTGATTACAGCGCACTTGCAGTTTCCGTTAACAGGAAGTCACATGGTTATACAATCTCAATTGTGAAATCTAAGCAAGTTGCTGGAAATTTTTTCGAATGGGATGTCTCTGTTCATATTTATGATTCCGAAACAATGATGTGGGTGACCTCTTTGACAGAGGTTCTGACAGGATGGAGAGGTGGGGATGAGAGTGTTATCTGTGACGGGGTTTTGTACTTCTTGATTTATTCAACTGGGGGCGGGTTACCAGACAATCGTCATGGCCTAATCACATATAATCTCTCAGCACGTTCTCCTCATGGGTTATTGATACGCAGTTTTATTCCTGTACCTTCTCCTCTTACATGTGGCCGTCTGATGAACTTGAAGGAGAGGTTGGTTATAGTGGGAGGGATTGGTAAACAAGATCGGCCTGACATAATTAAGGGGATTGGTATCTGGCTTCTAAAGGGGAAGGACTGGCAAGAGATTGCGCGAATGCCTCACAAGTTCTTCCAAGGGTTTGGGGAGTTTGATGATGTTTTTGCCAGCAGCGGCACAGATGATCTCATATACATACAGAGCTACGGAGCTCCAACTCTTCTTGTATTTGACATGAACCTGAGGCATTGGAGATGGTCACAGAAGTGCCCTGTAACAAAGAGGTTCCCACTTCAGCTCTTTACTGGTTTTTGTTTCGAACCAAGGCTCGAAATTTCTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048731 GO:0048856 GO:0070647 GO:0071704 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

406

Amino Acids

46.42

Weight (kDa)

6.27

Isoelectric Point (pI)

49.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	44 - 82	1.1e-11	F-box domain
F-box-like	PF12937	45 - 83	3e-10	F-box-like
b-prop_At3g26010-like	PF24750	129 - 269	6.7e-09	F-box protein At3g26010-like, beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006718)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61590 AT3G61590 AT3G61590 AT3G61590
fragaria_vesca	FvH4_7g15730 FvH4_7g15730 FvH4_7g15730
malus_domestica	MD01G1073800.v1.1 MD07G1142500.v1.1
prunus_persica	Prupe.2G181900_v2.0.a1 Prupe.2G181900_v2.0.a1
pyrus_communis	pycom01g10300 pycom07g14130
rosa_chinensis	RchiOBHm_Chr1g0358441
rosa_laevigata	RLG00000002357 RLG00000027959
rosa_multiflora	Rmu_co8469433.1_g000001 Rmu_sc0008220.1_g000002
rosa_roxburghii	Rroxscaffold_4G00297920
rosa_rugosa	Rorug01G0262000
rosa_samantha	Rh1AG276300 Rh1BG242900 Rh1CG260000 Rh1DG271300
rosa_wichuraiana	Rw1G024590 Rw7G028420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	988
AciI	CCGC	4 cut(s)	52, 405, 753, 1047
AclWI	GGATC	2 cut(s)	302, 323
AcoI	YGGCCR	1 cut(s)	862
AcsI	RAATTY	3 cut(s)	506, 598, 1206
AcuI	CTGAAG	2 cut(s)	470, 1151
AcvI	CACGTG	1 cut(s)	262
AdeI	CACNNNGTG	1 cut(s)	200
AfaI	GTAC	2 cut(s)	728, 843
AfiI	CCNNNNNNNGG	1 cut(s)	543
AflIII	ACRYGT	2 cut(s)	473, 857
AgsI	TTSAA	4 cut(s)	234, 505, 744, 880
AjnI	CCWGG	1 cut(s)	496
AjuI	GAANNNNNNNTTGG	2 cut(s)	872, 904
AleI	CACNNNNGTG	1 cut(s)	1138
AluBI	AGCT	8 cut(s)	82, 107, 300, 361, 484, 1077, 1085, 1171
AluI	AGCT	8 cut(s)	82, 107, 300, 361, 484, 1077, 1085, 1171
Alw21I	GWGCWC	4 cut(s)	84, 196, 363, 1087
Alw26I	GTCTC	2 cut(s)	368, 622
AlwI	GGATC	2 cut(s)	302, 323
AoxI	GGCC	3 cut(s)	775, 862, 923
ApeKI	GCWGC	1 cut(s)	1044
ApoI	RAATTY	3 cut(s)	506, 598, 1206
ArsI	GACNNNNNNTTYG	2 cut(s)	600, 632
AspLEI	GCGC	2 cut(s)	524, 988
AsuHPI	GGTGA	1 cut(s)	667
AsuII	TTCGAA	2 cut(s)	606, 1191
AxyI	CCTNAGG	2 cut(s)	338, 1115
BaeGI	GKGCMC	1 cut(s)	1145
BanII	GRGCYC	4 cut(s)	84, 363, 495, 1087
BbrPI	CACGTG	1 cut(s)	262
Bbv12I	GWGCWC	4 cut(s)	84, 196, 363, 1087
BbvI	GCAGC	1 cut(s)	1056
BccI	CCATC	2 cut(s)	678, 1122
BceAI	ACGGC	1 cut(s)	849
BciT130I	CCWGG	1 cut(s)	498
BcoDI	GTCTC	2 cut(s)	368, 622
BfmI	CTRYAG	1 cut(s)	57
BisI	GCNGC	2 cut(s)	1045, 1048
BlsI	GCNGC	2 cut(s)	1046, 1049
Bme1390I	CCNGG	1 cut(s)	498
BmiI	GGNNCC	2 cut(s)	492, 1160
BmrFI	CCNGG	1 cut(s)	498
BmrI	ACTGGG	1 cut(s)	756
BmuI	ACTGGG	1 cut(s)	756
BoxI	GACNNNNGTC	1 cut(s)	768
Bpu14I	TTCGAA	2 cut(s)	606, 1191
BsaAI	YACGTR	2 cut(s)	197, 262
BsaBI	GATNNNNATC	1 cut(s)	947
BsaJI	CCNNGG	4 cut(s)	278, 496, 1009, 1196
Bsc4I	CCNNNNNNNGG	1 cut(s)	543
Bse1I	ACTGG	5 cut(s)	173, 319, 751, 977, 1183
Bse21I	CCTNAGG	2 cut(s)	338, 1115
Bse8I	GATNNNNATC	1 cut(s)	947
BseBI	CCWGG	1 cut(s)	498
BseDI	CCNNGG	4 cut(s)	278, 496, 1009, 1196
BseGI	GGATG	4 cut(s)	377, 619, 689, 703
BseJI	GATNNNNATC	1 cut(s)	947
BseLI	CCNNNNNNNGG	1 cut(s)	543
BseMII	CTCAG	5 cut(s)	90, 97, 352, 810, 1106
BseNI	ACTGG	5 cut(s)	173, 319, 751, 977, 1183
BseRI	GAGGAG	2 cut(s)	798, 840
BseSI	GKGCMC	1 cut(s)	1145
BseXI	GCAGC	1 cut(s)	1056
Bsh1236I	CGCG	1 cut(s)	988
BshFI	GGCC	3 cut(s)	777, 864, 925
BsiHKAI	GWGCWC	4 cut(s)	84, 196, 363, 1087
BslI	CCNNNNNNNGG	1 cut(s)	543
BsmAI	GTCTC	2 cut(s)	368, 622
BsmI	GAATGC	1 cut(s)	996
BsnI	GGCC	3 cut(s)	777, 864, 925
Bsp119I	TTCGAA	2 cut(s)	606, 1191
Bsp1286I	GDGCHC	6 cut(s)	84, 196, 363, 495, 1087, 1145
Bsp143I	GATC	4 cut(s)	307, 328, 919, 1057
BspACI	CCGC	4 cut(s)	52, 405, 753, 1047
BspANI	GGCC	3 cut(s)	777, 864, 925
BspCNI	CTCAG	5 cut(s)	89, 96, 351, 809, 1107
BspFNI	CGCG	1 cut(s)	988
BspLI	GGNNCC	2 cut(s)	492, 1160
BspPI	GGATC	2 cut(s)	302, 323
BspT104I	TTCGAA	2 cut(s)	606, 1191
BsrI	ACTGG	5 cut(s)	173, 319, 751, 977, 1183
BssECI	CCNNGG	4 cut(s)	278, 496, 1009, 1196
BssMI	GATC	4 cut(s)	307, 328, 919, 1057
BssT1I	CCWWGG	3 cut(s)	278, 1009, 1196
Bst2UI	CCWGG	1 cut(s)	498
Bst4CI	ACNGT	1 cut(s)	434
Bst6I	CTCTTC	1 cut(s)	1098
BstBAI	YACGTR	2 cut(s)	197, 262
BstBI	TTCGAA	2 cut(s)	606, 1191
BstC8I	GCNNGC	2 cut(s)	181, 1042
BstDEI	CTNAG	6 cut(s)	76, 83, 338, 582, 796, 1115
BstEII	GGTNACC	2 cut(s)	655, 756
BstF5I	GGATG	4 cut(s)	377, 619, 689, 703
BstFNI	CGCG	1 cut(s)	988
BstHHI	GCGC	2 cut(s)	524, 988
BstKTI	GATC	4 cut(s)	310, 331, 922, 1060
BstMAI	GTCTC	2 cut(s)	368, 622
BstMBI	GATC	4 cut(s)	307, 328, 919, 1057
BstMWI	GCNNNNNNNGC	1 cut(s)	490
BstNI	CCWGG	1 cut(s)	498
BstNSI	RCATGY	2 cut(s)	477, 861
BstPAI	GACNNNNGTC	1 cut(s)	768
BstPI	GGTNACC	2 cut(s)	655, 756
BstSCI	CCNGG	1 cut(s)	496
BstSFI	CTRYAG	1 cut(s)	57
BstSLI	GKGCMC	1 cut(s)	1145
BstUI	CGCG	1 cut(s)	988
BstV1I	GCAGC	1 cut(s)	1056
BstXI	CCANNNNNNTGG	1 cut(s)	1016
Bsu36I	CCTNAGG	2 cut(s)	338, 1115
BsuRI	GGCC	3 cut(s)	777, 864, 925
BtsCI	GGATG	4 cut(s)	377, 619, 689, 703
BtsIMutI	CAGTG	2 cut(s)	91, 126
Cac8I	GCNNGC	2 cut(s)	181, 1042
CfoI	GCGC	2 cut(s)	524, 988
Csp6I	GTAC	2 cut(s)	727, 842
CviAII	CATG	8 cut(s)	43, 402, 474, 554, 773, 812, 858, 1108
CviQI	GTAC	2 cut(s)	727, 842
DdeI	CTNAG	6 cut(s)	76, 83, 338, 582, 796, 1115
DpnI	GATC	4 cut(s)	309, 330, 921, 1059
DpnII	GATC	4 cut(s)	307, 328, 919, 1057
DraIII	CACNNNGTG	1 cut(s)	200
EaeI	YGGCCR	1 cut(s)	862
Eam1104I	CTCTTC	1 cut(s)	1098
EarI	CTCTTC	1 cut(s)	1098
EciI	GGCGGA	1 cut(s)	67
Ecl136II	GAGCTC	3 cut(s)	82, 361, 1085
Eco130I	CCWWGG	3 cut(s)	278, 1009, 1196
Eco24I	GRGCYC	4 cut(s)	84, 363, 495, 1087
Eco53kI	GAGCTC	3 cut(s)	82, 361, 1085
Eco57I	CTGAAG	2 cut(s)	470, 1151
Eco72I	CACGTG	1 cut(s)	262
Eco81I	CCTNAGG	2 cut(s)	338, 1115
Eco91I	GGTNACC	2 cut(s)	655, 756
EcoICRI	GAGCTC	3 cut(s)	82, 361, 1085
EcoO65I	GGTNACC	2 cut(s)	655, 756
EcoRII	CCWGG	1 cut(s)	496
EcoT14I	CCWWGG	3 cut(s)	278, 1009, 1196
EcoT22I	ATGCAT	1 cut(s)	325
EcoT38I	GRGCYC	4 cut(s)	84, 363, 495, 1087
ErhI	CCWWGG	3 cut(s)	278, 1009, 1196
FaeI	CATG	8 cut(s)	46, 405, 477, 557, 776, 815, 861, 1111
FatI	CATG	8 cut(s)	42, 401, 473, 553, 772, 811, 857, 1107
FauI	CCCGC	1 cut(s)	746
FauNDI	CATATG	1 cut(s)	325
Fnu4HI	GCNGC	2 cut(s)	1045, 1048
FokI	GGATG	4 cut(s)	364, 626, 696, 710
FriOI	GRGCYC	4 cut(s)	84, 363, 495, 1087
Fsp4HI	GCNGC	2 cut(s)	1045, 1048
GlaI	GCGC	2 cut(s)	523, 987
GluI	GCNGC	2 cut(s)	1045, 1048
HaeIII	GGCC	3 cut(s)	777, 864, 925
HhaI	GCGC	2 cut(s)	524, 988
Hin1II	CATG	8 cut(s)	46, 405, 477, 557, 776, 815, 861, 1111
Hin6I	GCGC	2 cut(s)	522, 986
HinP1I	GCGC	2 cut(s)	522, 986
HincII	GTYRAC	1 cut(s)	541
HindII	GTYRAC	1 cut(s)	541
HindIII	AAGCTT	1 cut(s)	482
HinfI	GANTC	3 cut(s)	68, 223, 635
HpaI	GTTAAC	1 cut(s)	541
HphI	GGTGA	1 cut(s)	667
Hpy166II	GTNNAC	3 cut(s)	294, 541, 914
Hpy188I	TCNGA	6 cut(s)	79, 191, 514, 640, 678, 870
Hpy188III	TCNNGA	5 cut(s)	137, 234, 340, 488, 733
Hpy8I	GTNNAC	3 cut(s)	294, 541, 914
Hpy99I	CGWCG	1 cut(s)	19
HpyAV	CCTTC	5 cut(s)	86, 231, 855, 874, 961
HpyCH4III	ACNGT	1 cut(s)	434
HpyCH4IV	ACGT	4 cut(s)	14, 196, 261, 802
HpyCH4V	TGCA	6 cut(s)	113, 207, 323, 369, 456, 530
HpyF10VI	GCNNNNNNNGC	1 cut(s)	490
HpyF3I	CTNAG	6 cut(s)	76, 83, 338, 582, 796, 1115
HpySE526I	ACGT	4 cut(s)	14, 196, 261, 802
Hsp92II	CATG	8 cut(s)	46, 405, 477, 557, 776, 815, 861, 1111
HspAI	GCGC	2 cut(s)	522, 986
KspAI	GTTAAC	1 cut(s)	541
Kzo9I	GATC	4 cut(s)	307, 328, 919, 1057
LmnI	GCTCC	5 cut(s)	305, 366, 490, 1082, 1090
Lsp1109I	GCAGC	1 cut(s)	1056
MaeII	ACGT	4 cut(s)	14, 196, 261, 802
MaeIII	GTNAC	6 cut(s)	549, 655, 713, 756, 1131, 1147
MalI	GATC	4 cut(s)	309, 330, 921, 1059
MboI	GATC	4 cut(s)	307, 328, 919, 1057
MboII	GAAGA	2 cut(s)	997, 1085
MfeI	CAATTG	2 cut(s)	382, 570
MhlI	GDGCHC	6 cut(s)	84, 196, 363, 495, 1087, 1145
MluCI	AATT	8 cut(s)	229, 382, 443, 506, 570, 598, 933, 1206
MmeI	TCCRAC	3 cut(s)	129, 335, 1112
Mph1103I	ATGCAT	1 cut(s)	325
MseI	TTAA	2 cut(s)	540, 936
MslI	CAYNNNNRTG	2 cut(s)	630, 1138
MspA1I	CMGCKG	1 cut(s)	1047
MspR9I	CCNGG	1 cut(s)	498
MunI	CAATTG	2 cut(s)	382, 570
Mva1269I	GAATGC	1 cut(s)	996
MvaI	CCWGG	1 cut(s)	498
MvnI	CGCG	1 cut(s)	988
MwoI	GCNNNNNNNGC	1 cut(s)	490
NdeI	CATATG	1 cut(s)	325
NdeII	GATC	4 cut(s)	307, 328, 919, 1057
NlaIII	CATG	8 cut(s)	46, 405, 477, 557, 776, 815, 861, 1111
NlaIV	GGNNCC	2 cut(s)	492, 1160
NmuCI	GTSAC	4 cut(s)	549, 655, 713, 1131
NsiI	ATGCAT	1 cut(s)	325
NspI	RCATGY	2 cut(s)	477, 861
NspV	TTCGAA	2 cut(s)	606, 1191
OliI	CACNNNNGTG	1 cut(s)	1138
PciI	ACATGT	2 cut(s)	473, 857
PctI	GAATGC	1 cut(s)	996
PfeI	GAWTC	3 cut(s)	68, 223, 635
PkrI	GCNGC	2 cut(s)	1046, 1049
PmaCI	CACGTG	1 cut(s)	262
PmlI	CACGTG	1 cut(s)	262
Ppu21I	YACGTR	2 cut(s)	197, 262
PscI	ACATGT	2 cut(s)	473, 857
PshAI	GACNNNNGTC	1 cut(s)	768
Psp124BI	GAGCTC	3 cut(s)	84, 363, 1087
Psp6I	CCWGG	1 cut(s)	496
PspCI	CACGTG	1 cut(s)	262
PspEI	GGTNACC	2 cut(s)	655, 756
PspGI	CCWGG	1 cut(s)	496
PspN4I	GGNNCC	2 cut(s)	492, 1160
RsaI	GTAC	2 cut(s)	728, 843
RsaNI	GTAC	2 cut(s)	727, 842
RseI	CAYNNNNRTG	2 cut(s)	630, 1138
SacI	GAGCTC	3 cut(s)	84, 363, 1087
SaqAI	TTAA	2 cut(s)	540, 936
SatI	GCNGC	2 cut(s)	1045, 1048
Sau3AI	GATC	4 cut(s)	307, 328, 919, 1057
ScrFI	CCNGG	1 cut(s)	498
SduI	GDGCHC	6 cut(s)	84, 196, 363, 495, 1087, 1145
SfcI	CTRYAG	1 cut(s)	57
SfuI	TTCGAA	2 cut(s)	606, 1191
SmiMI	CAYNNNNRTG	2 cut(s)	630, 1138
Sse9I	AATT	8 cut(s)	229, 382, 443, 506, 570, 598, 933, 1206
SsiI	CCGC	4 cut(s)	52, 405, 753, 1047
SstI	GAGCTC	3 cut(s)	84, 363, 1087
StyD4I	CCNGG	1 cut(s)	496
StyI	CCWWGG	3 cut(s)	278, 1009, 1196
TaaI	ACNGT	1 cut(s)	434
TaiI	ACGT	4 cut(s)	17, 199, 264, 805
TaqI	TCGA	3 cut(s)	606, 1191, 1203
TasI	AATT	8 cut(s)	229, 382, 443, 506, 570, 598, 933, 1206
TatI	WGTACW	1 cut(s)	726
TauI	GCSGC	1 cut(s)	1050
TfiI	GAWTC	3 cut(s)	68, 223, 635
Tru1I	TTAA	2 cut(s)	540, 936
Tru9I	TTAA	2 cut(s)	540, 936
TscAI	CASTG	2 cut(s)	91, 126
TseFI	GTSAC	4 cut(s)	549, 655, 713, 1131
TseI	GCWGC	1 cut(s)	1044
Tsp45I	GTSAC	4 cut(s)	549, 655, 713, 1131
TspDTI	ATGAA	6 cut(s)	60, 105, 387, 614, 887, 1124
TspGWI	ACGGA	3 cut(s)	169, 526, 1095
TspRI	CASTG	2 cut(s)	91, 126
XapI	RAATTY	3 cut(s)	506, 598, 1206
XceI	RCATGY	2 cut(s)	477, 861
Zsp2I	ATGCAT	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.