Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0006718

Physical Location & Seq

Genomic Coordinates Forward (+)

11100255 .. 11101184

Gene Structure 930 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g10300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGAGGGAGAAACTTCGTGGTTTAGCCATCCCCTTGATAACATGGCAAGAGGGACTACGGAGTATGATGCATTCTCAGAGCTCAGTGATGAAGGAAATAGAGAAGCTAATGCAGTTTTGGTGGATTTGATACTTCCTGATGACCTGTTGGAACGGATATTAGCGTATCTACCAGTTGCAAGCATTTTCAGAGCACGTAGTGTGTGCAAAAGGTGGCATGAAATTCTTAGTTCAAGAAGGTTTCTGTGGAACTTTTCGAACGTGCTATCACAAAAACCTTGGTATTTTATGTTTACAAGTTCTAATGATCCAACTGGTTATGCATATGATCCTATCCTCAGAAAGTGGTATGGTATTGAGCTCCCCCGTATTGAGACATCCAATTGGTTAATTGCGTCATCATGCGGTTTGGTTTGCTTTATGGACAATGAAAGTAGAACTGAGTTATATGTCTGCAACCCTATTACCAAAACATGCAGGAAGCTTCAGGAGCCCCCTGGCTTGAGATTTTCTGATTACAGCGCACCTGCAGTTTCCGTTAACAGGAAGTCACATGGTTATACTATCTCAATTGTGAAATCTAAGCAAGTTGCTGGAAATTTTTTCCAATGGGATGTGTCCATTCATATTTATGATTCAGAAACAATGATGTGGGTGACCTCTTTGACAGAGGTTCTGACAGGATGGAGAGGTGGAGATGAGAGTGTAATCTGTGACGGGGTTTTGTACTTCTTGATTTACTCAACTGGGGGCGGGTCACCAGACAATCGTCATGGCCTAATCACATATAATTTATCTGCTTGTTCTACCCATGGGTTGTTGATACGCAGTATAATTCCTGTACCTTGCTCTCTTACATGTGGCCGTCTGATGAACTTGAAAGAGAGGTTGGTTATGGTGGGAGGGATTGGTAAACAAGATCGAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048731 GO:0048856 GO:0070647 GO:0071704 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

310

Amino Acids

34.93

Weight (kDa)

6.1

Isoelectric Point (pI)

47.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	44 - 83	1.2e-11	F-box domain
F-box-like	PF12937	45 - 84	1e-10	F-box-like
b-prop_At3g26010-like	PF24750	129 - 270	4.6e-08	F-box protein At3g26010-like, beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006718)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61590 AT3G61590 AT3G61590 AT3G61590
fragaria_vesca	FvH4_7g15730 FvH4_7g15730 FvH4_7g15730
malus_domestica	MD01G1073800.v1.1 MD07G1142500.v1.1
prunus_persica	Prupe.2G181900_v2.0.a1 Prupe.2G181900_v2.0.a1
pyrus_communis	pycom01g10300 pycom07g14130
rosa_chinensis	RchiOBHm_Chr1g0358441
rosa_laevigata	RLG00000002357 RLG00000027959
rosa_multiflora	Rmu_co8469433.1_g000001 Rmu_sc0008220.1_g000002
rosa_roxburghii	Rroxscaffold_4G00297920
rosa_rugosa	Rorug01G0262000
rosa_samantha	Rh1AG276300 Rh1BG242900 Rh1CG260000 Rh1DG271300
rosa_wichuraiana	Rw1G024590 Rw7G028420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	535
Acc36I	ACCTGC	1 cut(s)	535
AciI	CCGC	2 cut(s)	405, 753
AclWI	GGATC	2 cut(s)	302, 323
AcoI	YGGCCR	1 cut(s)	862
AcsI	RAATTY	2 cut(s)	222, 598
AcuI	CTGAAG	1 cut(s)	470
AdeI	CACNNNGTG	1 cut(s)	200
AfaI	GTAC	2 cut(s)	728, 843
AfiI	CCNNNNNNNGG	1 cut(s)	543
AflIII	ACRYGT	1 cut(s)	857
AgsI	TTSAA	2 cut(s)	234, 880
AjnI	CCWGG	1 cut(s)	496
AjuI	GAANNNNNNNTTGG	2 cut(s)	872, 904
AluBI	AGCT	4 cut(s)	82, 107, 361, 484
AluI	AGCT	4 cut(s)	82, 107, 361, 484
Alw21I	GWGCWC	3 cut(s)	84, 196, 363
Alw26I	GTCTC	1 cut(s)	368
AlwI	GGATC	2 cut(s)	302, 323
AoxI	GGCC	2 cut(s)	775, 862
ApoI	RAATTY	2 cut(s)	222, 598
AspLEI	GCGC	1 cut(s)	524
AsuHPI	GGTGA	2 cut(s)	667, 750
AsuII	TTCGAA	1 cut(s)	257
BanII	GRGCYC	3 cut(s)	84, 363, 495
Bbv12I	GWGCWC	3 cut(s)	84, 196, 363
BccI	CCATC	2 cut(s)	36, 678
BceAI	ACGGC	1 cut(s)	849
BciT130I	CCWGG	1 cut(s)	498
BcoDI	GTCTC	1 cut(s)	368
BfmI	CTRYAG	1 cut(s)	528
BfuAI	ACCTGC	1 cut(s)	535
Bme1390I	CCNGG	1 cut(s)	498
BmiI	GGNNCC	1 cut(s)	492
BmrFI	CCNGG	1 cut(s)	498
BmrI	ACTGGG	1 cut(s)	756
BmsI	GCATC	1 cut(s)	58
BmuI	ACTGGG	1 cut(s)	756
BoxI	GACNNNNGTC	1 cut(s)	768
Bpu14I	TTCGAA	1 cut(s)	257
BpuEI	CTTGAG	1 cut(s)	523
BsaAI	YACGTR	1 cut(s)	197
BsaJI	CCNNGG	3 cut(s)	278, 496, 811
Bsc4I	CCNNNNNNNGG	1 cut(s)	543
Bse1I	ACTGG	3 cut(s)	173, 319, 751
BseBI	CCWGG	1 cut(s)	498
BseDI	CCNNGG	3 cut(s)	278, 496, 811
BseGI	GGATG	4 cut(s)	28, 377, 619, 689
BseLI	CCNNNNNNNGG	1 cut(s)	543
BseMII	CTCAG	4 cut(s)	90, 97, 352, 432
BseNI	ACTGG	3 cut(s)	173, 319, 751
BshFI	GGCC	2 cut(s)	777, 864
BsiHKAI	GWGCWC	3 cut(s)	84, 196, 363
BslFI	GGGAC	1 cut(s)	67
BslI	CCNNNNNNNGG	1 cut(s)	543
BsmAI	GTCTC	1 cut(s)	368
BsmFI	GGGAC	1 cut(s)	67
BsmI	GAATGC	1 cut(s)	71
BsnI	GGCC	2 cut(s)	777, 864
Bsp119I	TTCGAA	1 cut(s)	257
Bsp1286I	GDGCHC	4 cut(s)	84, 196, 363, 495
Bsp143I	GATC	3 cut(s)	307, 328, 919
Bsp19I	CCATGG	1 cut(s)	811
BspACI	CCGC	2 cut(s)	405, 753
BspANI	GGCC	2 cut(s)	777, 864
BspCNI	CTCAG	4 cut(s)	89, 96, 351, 433
BspLI	GGNNCC	1 cut(s)	492
BspMAI	CTGCAG	1 cut(s)	532
BspMI	ACCTGC	1 cut(s)	535
BspPI	GGATC	2 cut(s)	302, 323
BspT104I	TTCGAA	1 cut(s)	257
BsrI	ACTGG	3 cut(s)	173, 319, 751
BssECI	CCNNGG	3 cut(s)	278, 496, 811
BssMI	GATC	3 cut(s)	307, 328, 919
BssT1I	CCWWGG	2 cut(s)	278, 811
Bst2UI	CCWGG	1 cut(s)	498
BstBAI	YACGTR	1 cut(s)	197
BstBI	TTCGAA	1 cut(s)	257
BstC8I	GCNNGC	1 cut(s)	181
BstDEI	CTNAG	6 cut(s)	76, 83, 227, 338, 441, 582
BstDSI	CCRYGG	1 cut(s)	811
BstEII	GGTNACC	2 cut(s)	655, 756
BstF5I	GGATG	4 cut(s)	28, 377, 619, 689
BstHHI	GCGC	1 cut(s)	524
BstKTI	GATC	3 cut(s)	310, 331, 922
BstMAI	GTCTC	1 cut(s)	368
BstMBI	GATC	3 cut(s)	307, 328, 919
BstMWI	GCNNNNNNNGC	1 cut(s)	490
BstNI	CCWGG	1 cut(s)	498
BstNSI	RCATGY	2 cut(s)	477, 861
BstPAI	GACNNNNGTC	1 cut(s)	768
BstPI	GGTNACC	2 cut(s)	655, 756
BstSCI	CCNGG	1 cut(s)	496
BstSFI	CTRYAG	1 cut(s)	528
BsuRI	GGCC	2 cut(s)	777, 864
BtgI	CCRYGG	1 cut(s)	811
BtsCI	GGATG	4 cut(s)	28, 377, 619, 689
BtsIMutI	CAGTG	1 cut(s)	91
BveI	ACCTGC	1 cut(s)	535
Cac8I	GCNNGC	1 cut(s)	181
CfoI	GCGC	1 cut(s)	524
CseI	GACGC	1 cut(s)	384
Csp6I	GTAC	2 cut(s)	727, 842
CviAII	CATG	8 cut(s)	43, 218, 402, 474, 554, 773, 812, 858
CviQI	GTAC	2 cut(s)	727, 842
DdeI	CTNAG	6 cut(s)	76, 83, 227, 338, 441, 582
DpnI	GATC	3 cut(s)	309, 330, 921
DpnII	GATC	3 cut(s)	307, 328, 919
DraIII	CACNNNGTG	1 cut(s)	200
EaeI	YGGCCR	1 cut(s)	862
Ecl136II	GAGCTC	2 cut(s)	82, 361
Eco130I	CCWWGG	2 cut(s)	278, 811
Eco24I	GRGCYC	3 cut(s)	84, 363, 495
Eco53kI	GAGCTC	2 cut(s)	82, 361
Eco57I	CTGAAG	1 cut(s)	470
Eco91I	GGTNACC	2 cut(s)	655, 756
EcoICRI	GAGCTC	2 cut(s)	82, 361
EcoO65I	GGTNACC	2 cut(s)	655, 756
EcoRII	CCWGG	1 cut(s)	496
EcoT14I	CCWWGG	2 cut(s)	278, 811
EcoT22I	ATGCAT	2 cut(s)	73, 325
EcoT38I	GRGCYC	3 cut(s)	84, 363, 495
ErhI	CCWWGG	2 cut(s)	278, 811
FaeI	CATG	8 cut(s)	46, 221, 405, 477, 557, 776, 815, 861
FaqI	GGGAC	1 cut(s)	67
FatI	CATG	8 cut(s)	42, 217, 401, 473, 553, 772, 811, 857
FauI	CCCGC	1 cut(s)	746
FauNDI	CATATG	1 cut(s)	325
FokI	GGATG	4 cut(s)	15, 364, 626, 696
FriOI	GRGCYC	3 cut(s)	84, 363, 495
GlaI	GCGC	1 cut(s)	523
HaeIII	GGCC	2 cut(s)	777, 864
HgaI	GACGC	1 cut(s)	384
HhaI	GCGC	1 cut(s)	524
Hin1II	CATG	8 cut(s)	46, 221, 405, 477, 557, 776, 815, 861
Hin6I	GCGC	1 cut(s)	522
HinP1I	GCGC	1 cut(s)	522
HincII	GTYRAC	1 cut(s)	541
HindII	GTYRAC	1 cut(s)	541
HindIII	AAGCTT	1 cut(s)	482
HinfI	GANTC	1 cut(s)	635
HpaI	GTTAAC	1 cut(s)	541
HphI	GGTGA	2 cut(s)	667, 750
Hpy166II	GTNNAC	3 cut(s)	294, 541, 914
Hpy188I	TCNGA	7 cut(s)	79, 191, 341, 514, 640, 678, 870
Hpy188III	TCNNGA	4 cut(s)	137, 234, 488, 733
Hpy8I	GTNNAC	3 cut(s)	294, 541, 914
HpyAV	CCTTC	2 cut(s)	86, 231
HpyCH4IV	ACGT	2 cut(s)	196, 261
HpyCH4V	TGCA	8 cut(s)	71, 113, 179, 207, 323, 456, 477, 530
HpyF10VI	GCNNNNNNNGC	1 cut(s)	490
HpyF3I	CTNAG	6 cut(s)	76, 83, 227, 338, 441, 582
HpySE526I	ACGT	2 cut(s)	196, 261
Hsp92II	CATG	8 cut(s)	46, 221, 405, 477, 557, 776, 815, 861
HspAI	GCGC	1 cut(s)	522
KspAI	GTTAAC	1 cut(s)	541
Kzo9I	GATC	3 cut(s)	307, 328, 919
LmnI	GCTCC	2 cut(s)	366, 490
LweI	GCATC	1 cut(s)	58
MaeII	ACGT	2 cut(s)	196, 261
MaeIII	GTNAC	4 cut(s)	549, 655, 713, 756
MalI	GATC	3 cut(s)	309, 330, 921
MboI	GATC	3 cut(s)	307, 328, 919
MfeI	CAATTG	2 cut(s)	382, 570
MhlI	GDGCHC	4 cut(s)	84, 196, 363, 495
MluCI	AATT	7 cut(s)	222, 382, 390, 570, 598, 790, 834
MmeI	TCCRAC	2 cut(s)	129, 335
MnlI	CCTC	7 cut(s)	44, 347, 664, 670, 683, 879, 896
Mph1103I	ATGCAT	2 cut(s)	73, 325
MseI	TTAA	2 cut(s)	389, 540
MslI	CAYNNNNRTG	1 cut(s)	630
MspR9I	CCNGG	1 cut(s)	498
MunI	CAATTG	2 cut(s)	382, 570
Mva1269I	GAATGC	1 cut(s)	71
MvaI	CCWGG	1 cut(s)	498
MwoI	GCNNNNNNNGC	1 cut(s)	490
NcoI	CCATGG	1 cut(s)	811
NdeI	CATATG	1 cut(s)	325
NdeII	GATC	3 cut(s)	307, 328, 919
NlaIII	CATG	8 cut(s)	46, 221, 405, 477, 557, 776, 815, 861
NlaIV	GGNNCC	1 cut(s)	492
NmuCI	GTSAC	4 cut(s)	549, 655, 713, 756
NsiI	ATGCAT	2 cut(s)	73, 325
NspI	RCATGY	2 cut(s)	477, 861
NspV	TTCGAA	1 cut(s)	257
PaqCI	CACCTGC	1 cut(s)	535
PciI	ACATGT	1 cut(s)	857
PctI	GAATGC	1 cut(s)	71
PfeI	GAWTC	1 cut(s)	635
Ppu21I	YACGTR	1 cut(s)	197
PscI	ACATGT	1 cut(s)	857
PshAI	GACNNNNGTC	1 cut(s)	768
Psp124BI	GAGCTC	2 cut(s)	84, 363
Psp6I	CCWGG	1 cut(s)	496
PspEI	GGTNACC	2 cut(s)	655, 756
PspGI	CCWGG	1 cut(s)	496
PspN4I	GGNNCC	1 cut(s)	492
PstI	CTGCAG	1 cut(s)	532
RsaI	GTAC	2 cut(s)	728, 843
RsaNI	GTAC	2 cut(s)	727, 842
RseI	CAYNNNNRTG	1 cut(s)	630
SacI	GAGCTC	2 cut(s)	84, 363
SaqAI	TTAA	2 cut(s)	389, 540
Sau3AI	GATC	3 cut(s)	307, 328, 919
ScrFI	CCNGG	1 cut(s)	498
SduI	GDGCHC	4 cut(s)	84, 196, 363, 495
SfaNI	GCATC	1 cut(s)	58
SfcI	CTRYAG	1 cut(s)	528
SfuI	TTCGAA	1 cut(s)	257
SmiMI	CAYNNNNRTG	1 cut(s)	630
SmlI	CTYRAG	1 cut(s)	502
SmoI	CTYRAG	1 cut(s)	502
Sse9I	AATT	7 cut(s)	222, 382, 390, 570, 598, 790, 834
SsiI	CCGC	2 cut(s)	405, 753
SstI	GAGCTC	2 cut(s)	84, 363
StyD4I	CCNGG	1 cut(s)	496
StyI	CCWWGG	2 cut(s)	278, 811
TaiI	ACGT	2 cut(s)	199, 264
TaqI	TCGA	2 cut(s)	257, 922
TasI	AATT	7 cut(s)	222, 382, 390, 570, 598, 790, 834
TatI	WGTACW	1 cut(s)	726
TfiI	GAWTC	1 cut(s)	635
Tru1I	TTAA	2 cut(s)	389, 540
Tru9I	TTAA	2 cut(s)	389, 540
TscAI	CASTG	1 cut(s)	91
TseFI	GTSAC	4 cut(s)	549, 655, 713, 756
Tsp45I	GTSAC	4 cut(s)	549, 655, 713, 756
TspDTI	ATGAA	5 cut(s)	105, 234, 444, 614, 887
TspGWI	ACGGA	3 cut(s)	74, 169, 526
TspRI	CASTG	1 cut(s)	91
XapI	RAATTY	2 cut(s)	222, 598
XceI	RCATGY	2 cut(s)	477, 861
Zsp2I	ATGCAT	2 cut(s)	73, 325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.