Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0006718

Physical Location & Seq

Genomic Coordinates Forward (+)

36986556 .. 36989683

Gene Structure 3128 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG242900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGGCAGAAGAAACGTCATGGTTTAGCCATTACCTTGATGACAGGCCAAGAGAGATTGGGGAGTATGAGTCATTTGCAGAGCTGAGTGATGAAGGGAATCAAGAAGTTACTGTAGTGTCAGTTGAATCTTTCCTTCCTGATGAACTGTTGGAGCGGATAATAGCAGATCTACCAATTGCGAGCATTTTCAGAGCACAGTCTGTGTGCAAAAGGTGGAATGGCATTGTTAGTTCAAAAAAATATATATCAACCAATTCACCCTTGCCACCGCAAAAACCTTGGTACTTTATGTTTACAAGCTGCAATGAACCAATTGGTTATGCATACGATCCTGTACTTAGAAAGTGGTATGGCATTGAGCTCCCCTGCATTCAAACATCAAATTGGTCAATTGCTTCCTCATGCGGTTTGGTTTGCTTTATGGACAATGATAGTAGAAGTGAGTTATACGTCTGCAACCCTCTTACGAAAATATACAAGAAGCTTGAGGAGCCTCCTGGCTTGAGATTTTCTGATTACGGTGCACTTGCAATTTCGGCTAACAGGATCTCAAGAAGTTATACTATTACAGTGGTGAAATCTAAGCAAGTTCCTGGAAATTTTTTCCAATGGGATGTTTCTGTTCACATTTATGATTCAGAAACAACAATGTGGCTGTCCCCTGTGACAGAAGTTCTGACAGGATGGAGAGGTGGGGATGAGAGTGTGGTCTGTGATGGGGTTTTGTACTTCTTGATTTACTCTACTGGGGGTGGGACACCAGAGAATCGTCATGGCCTAATCTCCTACAATCTCTCTGCTCGCTCTTCCCATGGGCAGTTGATCCGTAGTTTCATTCCTGTACCTTGTGCTCTTACATGTGGCCGTCTAATGAACTTGAGGGAGAAGCTGGTTATGGTGGGAGGAATTGGGAAACCAGATCGCCCTGACATAATTAAGGGGATTGGTATCTGGATTCTAAATGGGAAGGTGTGGCAAGAGATTGCTCGTATGCCTCACAAGTTTTTCCAAGGATTTGGAGAATTGGATGATGTTTTTGCCAGCAGTGGTATAGATGATCTCATATACATCCAGAGCTATGGAGCTCCAGCTCTTCTTGCGTTTGACATGCACTTGAAACATTGGAGATGGTCACAGAAGTGCCCGGTAACAAAGAAGTTTCCTCTCCAGCTCTTTTCTGGTTTTTGTTTCGAACCTCGGCTTGAAGTAAATCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048731 GO:0048856 GO:0070647 GO:0071704 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

405

Amino Acids

45.88

Weight (kDa)

5.74

Isoelectric Point (pI)

47.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	45 - 80	9.2e-08	F-box domain
F-box-like	PF12937	45 - 78	3.1e-07	F-box-like
b-prop_At3g26010-like	PF24750	128 - 275	1.6e-08	F-box protein At3g26010-like, beta-propeller
FBA_1	PF07734	136 - 270	4.3e-06	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006718)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61590 AT3G61590 AT3G61590 AT3G61590
fragaria_vesca	FvH4_7g15730 FvH4_7g15730 FvH4_7g15730
malus_domestica	MD01G1073800.v1.1 MD07G1142500.v1.1
prunus_persica	Prupe.2G181900_v2.0.a1 Prupe.2G181900_v2.0.a1
pyrus_communis	pycom01g10300 pycom07g14130
rosa_chinensis	RchiOBHm_Chr1g0358441
rosa_laevigata	RLG00000002357 RLG00000027959
rosa_multiflora	Rmu_co8469433.1_g000001 Rmu_sc0008220.1_g000002
rosa_roxburghii	Rroxscaffold_4G00297920
rosa_rugosa	Rorug01G0262000
rosa_samantha	Rh1AG276300 Rh1BG242900 Rh1CG260000 Rh1DG271300
rosa_wichuraiana	Rw1G024590 Rw7G028420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	154
AciI	CCGC	3 cut(s)	154, 269, 405
AclWI	GGATC	3 cut(s)	323, 554, 817
AcoI	YGGCCR	1 cut(s)	862
AcsI	RAATTY	1 cut(s)	598
AfaI	GTAC	4 cut(s)	284, 336, 728, 843
AflIII	ACRYGT	1 cut(s)	857
AgsI	TTSAA	5 cut(s)	125, 234, 374, 1117, 1205
AjnI	CCWGG	2 cut(s)	496, 592
AleI	CACNNNNGTG	1 cut(s)	1138
AluBI	AGCT	9 cut(s)	82, 300, 361, 484, 889, 1077, 1085, 1091, 1171
AluI	AGCT	9 cut(s)	82, 300, 361, 484, 889, 1077, 1085, 1091, 1171
Alw21I	GWGCWC	5 cut(s)	196, 363, 526, 853, 1087
Alw44I	GTGCAC	1 cut(s)	522
AlwI	GGATC	3 cut(s)	323, 554, 817
AoxI	GGCC	3 cut(s)	44, 775, 862
ApaLI	GTGCAC	1 cut(s)	522
ApeKI	GCWGC	1 cut(s)	300
ApoI	RAATTY	1 cut(s)	598
AsuC2I	CCSGG	1 cut(s)	1145
AsuHPI	GGTGA	2 cut(s)	249, 586
AsuII	TTCGAA	1 cut(s)	1191
BaeGI	GKGCMC	2 cut(s)	526, 1145
BanII	GRGCYC	2 cut(s)	363, 1087
Bbv12I	GWGCWC	5 cut(s)	196, 363, 526, 853, 1087
BbvI	GCAGC	1 cut(s)	287
BccI	CCATC	3 cut(s)	678, 710, 1122
BceAI	ACGGC	1 cut(s)	849
BciT130I	CCWGG	2 cut(s)	498, 594
BcnI	CCSGG	1 cut(s)	1145
BfmI	CTRYAG	1 cut(s)	111
BglII	AGATCT	1 cut(s)	166
BisI	GCNGC	1 cut(s)	301
BlsI	GCNGC	1 cut(s)	302
Bme1390I	CCNGG	3 cut(s)	498, 594, 1145
BmiI	GGNNCC	1 cut(s)	492
BmrFI	CCNGG	3 cut(s)	498, 594, 1145
BmrI	ACTGGG	1 cut(s)	756
BmuI	ACTGGG	1 cut(s)	756
BpmI	CTGGAG	2 cut(s)	1071, 1151
Bpu14I	TTCGAA	1 cut(s)	1191
BpuEI	CTTGAG	4 cut(s)	506, 523, 535, 898
BpuMI	CCSGG	1 cut(s)	1145
BsaBI	GATNNNNATC	1 cut(s)	947
BsaJI	CCNNGG	4 cut(s)	278, 811, 1009, 1196
BsaXI	ACNNNNNCTCC	2 cut(s)	53, 83
Bse1I	ACTGG	1 cut(s)	751
Bse3DI	GCAATG	1 cut(s)	310
Bse8I	GATNNNNATC	1 cut(s)	947
BseBI	CCWGG	2 cut(s)	498, 594
BseDI	CCNNGG	4 cut(s)	278, 811, 1009, 1196
BseGI	GGATG	5 cut(s)	619, 689, 703, 1033, 1068
BseJI	GATNNNNATC	1 cut(s)	947
BseMI	GCAATG	1 cut(s)	310
BseMII	CTCAG	1 cut(s)	74
BseNI	ACTGG	1 cut(s)	751
BseRI	GAGGAG	1 cut(s)	503
BseSI	GKGCMC	2 cut(s)	526, 1145
BseXI	GCAGC	1 cut(s)	287
BshFI	GGCC	3 cut(s)	46, 777, 864
BsiHKAI	GWGCWC	5 cut(s)	196, 363, 526, 853, 1087
BsiSI	CCGG	1 cut(s)	1145
BslFI	GGGAC	2 cut(s)	643, 769
BsmFI	GGGAC	2 cut(s)	643, 769
BsmI	GAATGC	1 cut(s)	369
BsnI	GGCC	3 cut(s)	46, 777, 864
Bsp119I	TTCGAA	1 cut(s)	1191
Bsp1286I	GDGCHC	6 cut(s)	196, 363, 526, 853, 1087, 1145
Bsp143I	GATC	6 cut(s)	166, 328, 546, 822, 919, 1057
Bsp19I	CCATGG	1 cut(s)	811
BspACI	CCGC	3 cut(s)	154, 269, 405
BspANI	GGCC	3 cut(s)	46, 777, 864
BspCNI	CTCAG	1 cut(s)	75
BspLI	GGNNCC	1 cut(s)	492
BspPI	GGATC	3 cut(s)	323, 554, 817
BspQI	GCTCTTC	2 cut(s)	811, 1098
BspT104I	TTCGAA	1 cut(s)	1191
BsrBI	CCGCTC	1 cut(s)	154
BsrDI	GCAATG	1 cut(s)	310
BsrI	ACTGG	1 cut(s)	751
BssECI	CCNNGG	4 cut(s)	278, 811, 1009, 1196
BssMI	GATC	6 cut(s)	166, 328, 546, 822, 919, 1057
BssT1I	CCWWGG	3 cut(s)	278, 811, 1009
Bst2UI	CCWGG	2 cut(s)	498, 594
Bst4CI	ACNGT	5 cut(s)	112, 147, 198, 521, 571
Bst6I	CTCTTC	2 cut(s)	811, 1098
BstBI	TTCGAA	1 cut(s)	1191
BstC8I	GCNNGC	3 cut(s)	181, 802, 1042
BstDEI	CTNAG	3 cut(s)	83, 338, 582
BstDSI	CCRYGG	1 cut(s)	811
BstF5I	GGATG	5 cut(s)	619, 689, 703, 1033, 1068
BstKTI	GATC	6 cut(s)	169, 331, 549, 825, 922, 1060
BstMBI	GATC	6 cut(s)	166, 328, 546, 822, 919, 1057
BstMWI	GCNNNNNNNGC	3 cut(s)	490, 536, 1097
BstNI	CCWGG	2 cut(s)	498, 594
BstNSI	RCATGY	2 cut(s)	861, 1111
BstSCI	CCNGG	3 cut(s)	496, 592, 1143
BstSFI	CTRYAG	1 cut(s)	111
BstSLI	GKGCMC	2 cut(s)	526, 1145
BstV1I	GCAGC	1 cut(s)	287
BstX2I	RGATCY	2 cut(s)	166, 546
BstXI	CCANNNNNNTGG	2 cut(s)	1016, 1079
BstYI	RGATCY	2 cut(s)	166, 546
BsuRI	GGCC	3 cut(s)	46, 777, 864
BtgI	CCRYGG	1 cut(s)	811
BtsCI	GGATG	5 cut(s)	619, 689, 703, 1033, 1068
BtsI	GCAGTG	1 cut(s)	1051
BtsIMutI	CAGTG	2 cut(s)	576, 1051
Cac8I	GCNNGC	3 cut(s)	181, 802, 1042
Csp6I	GTAC	4 cut(s)	283, 335, 727, 842
CviAII	CATG	6 cut(s)	18, 402, 773, 812, 858, 1108
CviQI	GTAC	4 cut(s)	283, 335, 727, 842
DdeI	CTNAG	3 cut(s)	83, 338, 582
DpnI	GATC	6 cut(s)	168, 330, 548, 824, 921, 1059
DpnII	GATC	6 cut(s)	166, 328, 546, 822, 919, 1057
EaeI	YGGCCR	1 cut(s)	862
Eam1104I	CTCTTC	2 cut(s)	811, 1098
EarI	CTCTTC	2 cut(s)	811, 1098
Ecl136II	GAGCTC	2 cut(s)	361, 1085
Eco130I	CCWWGG	3 cut(s)	278, 811, 1009
Eco24I	GRGCYC	2 cut(s)	363, 1087
Eco53kI	GAGCTC	2 cut(s)	361, 1085
EcoICRI	GAGCTC	2 cut(s)	361, 1085
EcoRII	CCWGG	2 cut(s)	496, 592
EcoT14I	CCWWGG	3 cut(s)	278, 811, 1009
EcoT22I	ATGCAT	1 cut(s)	325
EcoT38I	GRGCYC	2 cut(s)	363, 1087
ErhI	CCWWGG	3 cut(s)	278, 811, 1009
FaeI	CATG	6 cut(s)	21, 405, 776, 815, 861, 1111
FaqI	GGGAC	2 cut(s)	643, 769
FatI	CATG	6 cut(s)	17, 401, 772, 811, 857, 1107
Fnu4HI	GCNGC	1 cut(s)	301
FokI	GGATG	5 cut(s)	626, 696, 710, 1040, 1055
FriOI	GRGCYC	2 cut(s)	363, 1087
Fsp4HI	GCNGC	1 cut(s)	301
GluI	GCNGC	1 cut(s)	301
GsuI	CTGGAG	2 cut(s)	1071, 1151
HaeIII	GGCC	3 cut(s)	46, 777, 864
HapII	CCGG	1 cut(s)	1145
Hin1II	CATG	6 cut(s)	21, 405, 776, 815, 861, 1111
HindIII	AAGCTT	1 cut(s)	482
HinfI	GANTC	6 cut(s)	68, 97, 125, 635, 766, 955
HpaII	CCGG	1 cut(s)	1145
HphI	GGTGA	2 cut(s)	249, 586
Hpy166II	GTNNAC	3 cut(s)	294, 524, 625
Hpy188I	TCNGA	4 cut(s)	191, 514, 640, 678
Hpy188III	TCNNGA	6 cut(s)	101, 137, 552, 733, 952, 1072
Hpy8I	GTNNAC	3 cut(s)	294, 524, 625
HpyAV	CCTTC	3 cut(s)	86, 143, 961
HpyCH4III	ACNGT	5 cut(s)	112, 147, 198, 521, 571
HpyCH4IV	ACGT	2 cut(s)	14, 450
HpyCH4V	TGCA	9 cut(s)	77, 207, 303, 323, 369, 456, 524, 530, 1111
HpyF10VI	GCNNNNNNNGC	3 cut(s)	490, 536, 1097
HpyF3I	CTNAG	3 cut(s)	83, 338, 582
HpySE526I	ACGT	2 cut(s)	14, 450
Hsp92II	CATG	6 cut(s)	21, 405, 776, 815, 861, 1111
Kzo9I	GATC	6 cut(s)	166, 328, 546, 822, 919, 1057
LguI	GCTCTTC	2 cut(s)	811, 1098
LmnI	GCTCC	5 cut(s)	151, 366, 490, 1082, 1090
Lsp1109I	GCAGC	1 cut(s)	287
MaeII	ACGT	2 cut(s)	14, 450
MaeIII	GTNAC	4 cut(s)	106, 664, 1131, 1147
MalI	GATC	6 cut(s)	168, 330, 548, 824, 921, 1059
MbiI	CCGCTC	1 cut(s)	154
MboI	GATC	6 cut(s)	166, 328, 546, 822, 919, 1057
MboII	GAAGA	3 cut(s)	20, 798, 1085
MfeI	CAATTG	3 cut(s)	174, 312, 390
MflI	RGATCY	2 cut(s)	166, 546
MhlI	GDGCHC	6 cut(s)	196, 363, 526, 853, 1087, 1145
MlyI	GAGTC	1 cut(s)	77
MmeI	TCCRAC	1 cut(s)	129
Mph1103I	ATGCAT	1 cut(s)	325
MseI	TTAA	1 cut(s)	936
MslI	CAYNNNNRTG	2 cut(s)	630, 1138
MspI	CCGG	1 cut(s)	1145
MspR9I	CCNGG	3 cut(s)	498, 594, 1145
MunI	CAATTG	3 cut(s)	174, 312, 390
Mva1269I	GAATGC	1 cut(s)	369
MvaI	CCWGG	2 cut(s)	498, 594
MwoI	GCNNNNNNNGC	3 cut(s)	490, 536, 1097
NciI	CCSGG	1 cut(s)	1145
NcoI	CCATGG	1 cut(s)	811
NdeII	GATC	6 cut(s)	166, 328, 546, 822, 919, 1057
NlaIII	CATG	6 cut(s)	21, 405, 776, 815, 861, 1111
NlaIV	GGNNCC	1 cut(s)	492
NmeAIII	GCCGAG	1 cut(s)	1177
NmuCI	GTSAC	2 cut(s)	664, 1131
NsiI	ATGCAT	1 cut(s)	325
NspI	RCATGY	2 cut(s)	861, 1111
NspV	TTCGAA	1 cut(s)	1191
OliI	CACNNNNGTG	1 cut(s)	1138
PciI	ACATGT	1 cut(s)	857
PciSI	GCTCTTC	2 cut(s)	811, 1098
PctI	GAATGC	1 cut(s)	369
PfeI	GAWTC	5 cut(s)	97, 125, 635, 766, 955
PfoI	TCCNGGA	1 cut(s)	592
PkrI	GCNGC	1 cut(s)	302
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
PscI	ACATGT	1 cut(s)	857
Psp124BI	GAGCTC	2 cut(s)	363, 1087
Psp6I	CCWGG	2 cut(s)	496, 592
PspGI	CCWGG	2 cut(s)	496, 592
PspN4I	GGNNCC	1 cut(s)	492
PsuI	RGATCY	2 cut(s)	166, 546
RsaI	GTAC	4 cut(s)	284, 336, 728, 843
RsaNI	GTAC	4 cut(s)	283, 335, 727, 842
RseI	CAYNNNNRTG	2 cut(s)	630, 1138
SacI	GAGCTC	2 cut(s)	363, 1087
SapI	GCTCTTC	2 cut(s)	811, 1098
SaqAI	TTAA	1 cut(s)	936
SatI	GCNGC	1 cut(s)	301
Sau3AI	GATC	6 cut(s)	166, 328, 546, 822, 919, 1057
SchI	GAGTC	1 cut(s)	77
ScrFI	CCNGG	3 cut(s)	498, 594, 1145
SduI	GDGCHC	6 cut(s)	196, 363, 526, 853, 1087, 1145
SfcI	CTRYAG	1 cut(s)	111
SfuI	TTCGAA	1 cut(s)	1191
SmiMI	CAYNNNNRTG	2 cut(s)	630, 1138
SmlI	CTYRAG	4 cut(s)	485, 502, 550, 877
SmoI	CTYRAG	4 cut(s)	485, 502, 550, 877
SsiI	CCGC	3 cut(s)	154, 269, 405
SstI	GAGCTC	2 cut(s)	363, 1087
StyD4I	CCNGG	3 cut(s)	496, 592, 1143
StyI	CCWWGG	3 cut(s)	278, 811, 1009
TaaI	ACNGT	5 cut(s)	112, 147, 198, 521, 571
TaiI	ACGT	2 cut(s)	17, 453
TaqI	TCGA	1 cut(s)	1191
TatI	WGTACW	2 cut(s)	334, 726
TfiI	GAWTC	5 cut(s)	97, 125, 635, 766, 955
Tru1I	TTAA	1 cut(s)	936
Tru9I	TTAA	1 cut(s)	936
TscAI	CASTG	2 cut(s)	576, 1051
TseFI	GTSAC	2 cut(s)	664, 1131
TseI	GCWGC	1 cut(s)	300
Tsp45I	GTSAC	2 cut(s)	664, 1131
TspDTI	ATGAA	5 cut(s)	105, 156, 321, 823, 887
TspGWI	ACGGA	1 cut(s)	815
TspRI	CASTG	2 cut(s)	576, 1051
VneI	GTGCAC	1 cut(s)	522
XapI	RAATTY	1 cut(s)	598
XceI	RCATGY	2 cut(s)	861, 1111
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1175
Zsp2I	ATGCAT	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.