Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0006718

Physical Location & Seq

Genomic Coordinates Forward (+)

32690969 .. 32691612

Gene Structure 644 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002357

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGACAATGATAGTAGAAGTGAGTTATACGTCTACAACCCTCTAACAAAAATATACAAGAAGATTGAGGAGCCTCCTGGCTTGAGATTTTCTGATTATGGTGCACTTGCAATTTCGGCTAACAAGATCTCAAGAAGTTACACTATTACAGTGGTGAAATCTAAGCAAGTTCCTGGAAATTTTTTCCAATGGGATGTTTCTGTTCATATTTATGATTCGCAAACAACAATGTGGCTGTCCCCTGTGACAGAAGTTCTGACAGGATGGAGAGAGAATCGTCACGGCCTAACCTCCTATAATCCCTCTGCTCGCTCTTCCCATGGGCAGTTGATCCGCAGTTTCATTCATGTACCTTGTGCTCTTAAATGTGGCAGTCTAATGAACTTTAGGGAGAAGCTGGTTATGGTAGGAGGAATTGGGAAACCAGATCACCCTGACACAATTAACGGGATTGGTATCTGGATTCTAAATGGGAAGGTGTGGCAAGAGATTGCCCGTATGCCTCACAAGTTTTTCCAAGGATTTGGAGAATTGGATGATGTTTTTGCCAGCAGTGGTATAGATAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048731 GO:0048856 GO:0070647 GO:0071704 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

190

Amino Acids

21.37

Weight (kDa)

8.85

Isoelectric Point (pI)

40.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006718)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61590 AT3G61590 AT3G61590 AT3G61590
fragaria_vesca	FvH4_7g15730 FvH4_7g15730 FvH4_7g15730
malus_domestica	MD01G1073800.v1.1 MD07G1142500.v1.1
prunus_persica	Prupe.2G181900_v2.0.a1 Prupe.2G181900_v2.0.a1
pyrus_communis	pycom01g10300 pycom07g14130
rosa_chinensis	RchiOBHm_Chr1g0358441
rosa_laevigata	RLG00000002357 RLG00000027959
rosa_multiflora	Rmu_co8469433.1_g000001 Rmu_sc0008220.1_g000002
rosa_roxburghii	Rroxscaffold_4G00297920
rosa_rugosa	Rorug01G0262000
rosa_samantha	Rh1AG276300 Rh1BG242900 Rh1CG260000 Rh1DG271300
rosa_wichuraiana	Rw1G024590 Rw7G028420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	33
AciI	CCGC	1 cut(s)	334
AclWI	GGATC	1 cut(s)	325
AcsI	RAATTY	1 cut(s)	178
AfaI	GTAC	1 cut(s)	351
AjnI	CCWGG	2 cut(s)	76, 172
AluBI	AGCT	1 cut(s)	397
AluI	AGCT	1 cut(s)	397
Alw21I	GWGCWC	2 cut(s)	106, 361
Alw44I	GTGCAC	1 cut(s)	102
AlwI	GGATC	1 cut(s)	325
AoxI	GGCC	1 cut(s)	283
ApaLI	GTGCAC	1 cut(s)	102
ApoI	RAATTY	1 cut(s)	178
AsuHPI	GGTGA	2 cut(s)	166, 422
BaeGI	GKGCMC	1 cut(s)	106
Bbv12I	GWGCWC	2 cut(s)	106, 361
BccI	CCATC	1 cut(s)	258
BceAI	ACGGC	1 cut(s)	298
BciT130I	CCWGG	2 cut(s)	78, 174
BglII	AGATCT	1 cut(s)	126
Bme1390I	CCNGG	2 cut(s)	78, 174
BmiI	GGNNCC	1 cut(s)	72
BmrFI	CCNGG	2 cut(s)	78, 174
BpuEI	CTTGAG	2 cut(s)	103, 115
BsaBI	GATNNNNATC	1 cut(s)	455
BsaJI	CCNNGG	2 cut(s)	319, 517
Bse8I	GATNNNNATC	1 cut(s)	455
BseBI	CCWGG	2 cut(s)	78, 174
BseDI	CCNNGG	2 cut(s)	319, 517
BseGI	GGATG	3 cut(s)	199, 269, 541
BseJI	GATNNNNATC	1 cut(s)	455
BseRI	GAGGAG	1 cut(s)	83
BseSI	GKGCMC	1 cut(s)	106
BshFI	GGCC	1 cut(s)	285
BsiHKAI	GWGCWC	2 cut(s)	106, 361
BslFI	GGGAC	1 cut(s)	223
BsmFI	GGGAC	1 cut(s)	223
BsnI	GGCC	1 cut(s)	285
Bsp1286I	GDGCHC	2 cut(s)	106, 361
Bsp143I	GATC	3 cut(s)	126, 330, 427
Bsp19I	CCATGG	1 cut(s)	319
BspACI	CCGC	1 cut(s)	334
BspANI	GGCC	1 cut(s)	285
BspLI	GGNNCC	1 cut(s)	72
BspPI	GGATC	1 cut(s)	325
BspQI	GCTCTTC	1 cut(s)	319
BssECI	CCNNGG	2 cut(s)	319, 517
BssMI	GATC	3 cut(s)	126, 330, 427
BssT1I	CCWWGG	2 cut(s)	319, 517
Bst2UI	CCWGG	2 cut(s)	78, 174
Bst4CI	ACNGT	1 cut(s)	151
Bst6I	CTCTTC	1 cut(s)	319
BstC8I	GCNNGC	2 cut(s)	310, 550
BstDEI	CTNAG	1 cut(s)	162
BstDSI	CCRYGG	1 cut(s)	319
BstF5I	GGATG	3 cut(s)	199, 269, 541
BstKTI	GATC	3 cut(s)	129, 333, 430
BstMBI	GATC	3 cut(s)	126, 330, 427
BstMWI	GCNNNNNNNGC	1 cut(s)	116
BstNI	CCWGG	2 cut(s)	78, 174
BstSCI	CCNGG	2 cut(s)	76, 172
BstSLI	GKGCMC	1 cut(s)	106
BstX2I	RGATCY	1 cut(s)	126
BstXI	CCANNNNNNTGG	1 cut(s)	524
BstYI	RGATCY	1 cut(s)	126
BsuRI	GGCC	1 cut(s)	285
BtgI	CCRYGG	1 cut(s)	319
BtsCI	GGATG	3 cut(s)	199, 269, 541
BtsI	GCAGTG	1 cut(s)	559
BtsIMutI	CAGTG	2 cut(s)	156, 559
Cac8I	GCNNGC	2 cut(s)	310, 550
Csp6I	GTAC	1 cut(s)	350
CviAII	CATG	2 cut(s)	320, 347
CviJI	RGCY	6 cut(s)	73, 81, 119, 235, 285, 397
CviKI_1	RGCY	6 cut(s)	73, 81, 119, 235, 285, 397
CviQI	GTAC	1 cut(s)	350
DdeI	CTNAG	1 cut(s)	162
DpnI	GATC	3 cut(s)	128, 332, 429
DpnII	GATC	3 cut(s)	126, 330, 427
Eam1104I	CTCTTC	1 cut(s)	319
EarI	CTCTTC	1 cut(s)	319
Eco130I	CCWWGG	2 cut(s)	319, 517
EcoRII	CCWGG	2 cut(s)	76, 172
EcoT14I	CCWWGG	2 cut(s)	319, 517
ErhI	CCWWGG	2 cut(s)	319, 517
FaeI	CATG	2 cut(s)	323, 350
FaqI	GGGAC	1 cut(s)	223
FatI	CATG	2 cut(s)	319, 346
FblI	GTMKAC	1 cut(s)	33
FokI	GGATG	3 cut(s)	206, 276, 548
HaeIII	GGCC	1 cut(s)	285
Hin1II	CATG	2 cut(s)	323, 350
HinfI	GANTC	3 cut(s)	215, 274, 463
HphI	GGTGA	2 cut(s)	166, 422
Hpy166II	GTNNAC	2 cut(s)	34, 104
Hpy188I	TCNGA	2 cut(s)	94, 258
Hpy188III	TCNNGA	2 cut(s)	132, 460
Hpy8I	GTNNAC	2 cut(s)	34, 104
HpyAV	CCTTC	1 cut(s)	469
HpyCH4III	ACNGT	1 cut(s)	151
HpyCH4IV	ACGT	1 cut(s)	30
HpyCH4V	TGCA	2 cut(s)	104, 110
HpyF10VI	GCNNNNNNNGC	1 cut(s)	116
HpyF3I	CTNAG	1 cut(s)	162
HpySE526I	ACGT	1 cut(s)	30
Hsp92II	CATG	2 cut(s)	323, 350
Kzo9I	GATC	3 cut(s)	126, 330, 427
LguI	GCTCTTC	1 cut(s)	319
LmnI	GCTCC	1 cut(s)	70
MaeII	ACGT	1 cut(s)	30
MaeIII	GTNAC	3 cut(s)	137, 244, 278
MalI	GATC	3 cut(s)	128, 332, 429
MboI	GATC	3 cut(s)	126, 330, 427
MboII	GAAGA	2 cut(s)	73, 306
MflI	RGATCY	1 cut(s)	126
MhlI	GDGCHC	2 cut(s)	106, 361
MluCI	AATT	5 cut(s)	111, 178, 414, 441, 530
MnlI	CCTC	7 cut(s)	51, 61, 84, 301, 313, 404, 513
MseI	TTAA	2 cut(s)	363, 444
MslI	CAYNNNNRTG	1 cut(s)	210
MspR9I	CCNGG	2 cut(s)	78, 174
MvaI	CCWGG	2 cut(s)	78, 174
MwoI	GCNNNNNNNGC	1 cut(s)	116
NcoI	CCATGG	1 cut(s)	319
NdeII	GATC	3 cut(s)	126, 330, 427
NlaIII	CATG	2 cut(s)	323, 350
NlaIV	GGNNCC	1 cut(s)	72
NmuCI	GTSAC	2 cut(s)	244, 278
PciSI	GCTCTTC	1 cut(s)	319
PfeI	GAWTC	3 cut(s)	215, 274, 463
PfoI	TCCNGGA	1 cut(s)	172
Psp6I	CCWGG	2 cut(s)	76, 172
PspGI	CCWGG	2 cut(s)	76, 172
PspN4I	GGNNCC	1 cut(s)	72
PsuI	RGATCY	1 cut(s)	126
RsaI	GTAC	1 cut(s)	351
RsaNI	GTAC	1 cut(s)	350
RseI	CAYNNNNRTG	1 cut(s)	210
SapI	GCTCTTC	1 cut(s)	319
SaqAI	TTAA	2 cut(s)	363, 444
Sau3AI	GATC	3 cut(s)	126, 330, 427
ScrFI	CCNGG	2 cut(s)	78, 174
SduI	GDGCHC	2 cut(s)	106, 361
SetI	ASST	5 cut(s)	33, 293, 355, 399, 480
SmiMI	CAYNNNNRTG	1 cut(s)	210
SmlI	CTYRAG	2 cut(s)	82, 130
SmoI	CTYRAG	2 cut(s)	82, 130
Sse9I	AATT	5 cut(s)	111, 178, 414, 441, 530
SsiI	CCGC	1 cut(s)	334
StyD4I	CCNGG	2 cut(s)	76, 172
StyI	CCWWGG	2 cut(s)	319, 517
TaaI	ACNGT	1 cut(s)	151
TaiI	ACGT	1 cut(s)	33
TasI	AATT	5 cut(s)	111, 178, 414, 441, 530
TfiI	GAWTC	3 cut(s)	215, 274, 463
Tru1I	TTAA	2 cut(s)	363, 444
Tru9I	TTAA	2 cut(s)	363, 444
TscAI	CASTG	2 cut(s)	156, 559
TseFI	GTSAC	2 cut(s)	244, 278
Tsp45I	GTSAC	2 cut(s)	244, 278
TspDTI	ATGAA	4 cut(s)	194, 331, 335, 395
TspRI	CASTG	2 cut(s)	156, 559
VneI	GTGCAC	1 cut(s)	102
XapI	RAATTY	1 cut(s)	178
XmiI	GTMKAC	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.