Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0006718

Physical Location & Seq

Genomic Coordinates Forward (+)

17932559 .. 17935748

Gene Structure 3190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1073800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGGAGGGAGAAACATCGTGGTTTAGCCATCCCTTTGATAACATGGCAAGAGGGACTACAGAGTATGATGCATTCTCGGAGCTCAGTGATGAAGGAAATAGAGAAGCTAATGCAGTTTCAGTGGATTTGATACTTCCTGATGACCTGTTGGAACGGATATTAGCGTATCTACCAGTTGCAAGCATTTTCAGAGCACGTAGTGTGTGCAAAAGGTGGCATGAAATTCTTAGTTCAAGAAGGTTTCTGTGGAACTTTTCGAACGTGCTATCTCAAAAACCTTGGTATTTTATGTTTACAAGTTCTAATGATCCAACTGGTTATGCATATGATCCTATCCTCAGAAAGTGGTATGGTATTGAGCTCCCCTGTATTGAGACATCCAATTGGTTAATTGCGTCATCATGCGGTTTGGTTTGCTTTATGGACAATGAAAGTAGAACTGAGTTATATGTCTGCAACCCTATTACCAAAACATGCAGGAAGCTTCAGGAGCCCCCTGGCTTGAGATTTTCTGATTACAGTGCACCAGCAGTTTCCGTTAACAGGAAGTCACATGGTTATACTATCTCAATTGTGAAATCTAAGCAAGTTGCTGGAAATTTTTTCCAATGGGATGTGTCCATTCATATTTATGATTCAGAAACAATGATGTGGGTGACCTCTTTGACAGAGGTTCTGACAGGATGGAGAGGTGGAGATGAGAGTGTAATCTGTGACGGGGTTTTGTACTTCTTGATTTACTCAACTGGGGGTGGGTCACCAGACAATCGTCATGGCCTAATCACATATAATTTATCTGCTTGTTCTACCCATGGGTTGTTGATACGCAGTATAATTCCTGTACCTTGCTCTCTTACATGTGGCCGTCTGATGAACTTGAAAGAGAGGTTGGTTATGGTGGGAGGGATTGGTAAACAAGATCGGCCTGACATAATTAAGGGGATTGGTATCTGGCTTCTAAAGGGGAAAGAGTGGCAAGAGATTGCACGAATGCCTCACAAGTTCTTCCAAGGGTTTGGGGAGTTTGATGATGTTTTCGCCAGCAGCGGCACAGATGATCTCATATACATTCAGAGCTACGGATCTCCTGCTCTTCTTGTATTTGACATGAACCTGAGGCATTGGAGATGGTCCCAGAAGTGCCCTGTAACAAAGAGGTTCCCACTTCAGCTCTTTACTGGTTTTTGTTTCGAACCGAGGCTCGAAATTTCTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048731 GO:0048856 GO:0070647 GO:0071704 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

406

Amino Acids

46.14

Weight (kDa)

6.1

Isoelectric Point (pI)

50.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	44 - 83	1.7e-11	F-box domain
F-box-like	PF12937	45 - 84	1.5e-10	F-box-like
b-prop_At3g26010-like	PF24750	129 - 270	1.1e-07	F-box protein At3g26010-like, beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006718)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61590 AT3G61590 AT3G61590 AT3G61590
fragaria_vesca	FvH4_7g15730 FvH4_7g15730 FvH4_7g15730
malus_domestica	MD01G1073800.v1.1 MD07G1142500.v1.1
prunus_persica	Prupe.2G181900_v2.0.a1 Prupe.2G181900_v2.0.a1
pyrus_communis	pycom01g10300 pycom07g14130
rosa_chinensis	RchiOBHm_Chr1g0358441
rosa_laevigata	RLG00000002357 RLG00000027959
rosa_multiflora	Rmu_co8469433.1_g000001 Rmu_sc0008220.1_g000002
rosa_roxburghii	Rroxscaffold_4G00297920
rosa_rugosa	Rorug01G0262000
rosa_samantha	Rh1AG276300 Rh1BG242900 Rh1CG260000 Rh1DG271300
rosa_wichuraiana	Rw1G024590 Rw7G028420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	405, 1047
AclWI	GGATC	3 cut(s)	302, 323, 1090
AcoI	YGGCCR	1 cut(s)	862
AcsI	RAATTY	3 cut(s)	222, 598, 1206
AcuI	CTGAAG	2 cut(s)	470, 1151
AdeI	CACNNNGTG	1 cut(s)	200
AfaI	GTAC	2 cut(s)	728, 843
AfiI	CCNNNNNNNGG	1 cut(s)	543
AflIII	ACRYGT	1 cut(s)	857
AgsI	TTSAA	2 cut(s)	234, 880
AjnI	CCWGG	1 cut(s)	496
AjuI	GAANNNNNNNTTGG	2 cut(s)	872, 904
AluBI	AGCT	6 cut(s)	82, 107, 361, 484, 1077, 1171
AluI	AGCT	6 cut(s)	82, 107, 361, 484, 1077, 1171
Alw21I	GWGCWC	4 cut(s)	84, 196, 363, 526
Alw26I	GTCTC	1 cut(s)	368
Alw44I	GTGCAC	1 cut(s)	522
AlwI	GGATC	3 cut(s)	302, 323, 1090
AoxI	GGCC	3 cut(s)	775, 862, 923
ApaLI	GTGCAC	1 cut(s)	522
ApeKI	GCWGC	1 cut(s)	1044
ApoI	RAATTY	3 cut(s)	222, 598, 1206
AspS9I	GGNCC	1 cut(s)	1131
AsuHPI	GGTGA	2 cut(s)	667, 750
AsuII	TTCGAA	2 cut(s)	257, 1191
AvaII	GGWCC	1 cut(s)	1131
AxyI	CCTNAGG	1 cut(s)	1115
BaeGI	GKGCMC	2 cut(s)	526, 1145
BanII	GRGCYC	3 cut(s)	84, 363, 495
Bbv12I	GWGCWC	4 cut(s)	84, 196, 363, 526
BbvI	GCAGC	1 cut(s)	1056
BccI	CCATC	3 cut(s)	36, 678, 1122
BceAI	ACGGC	1 cut(s)	849
BciT130I	CCWGG	1 cut(s)	498
BcoDI	GTCTC	1 cut(s)	368
BfmI	CTRYAG	1 cut(s)	57
BisI	GCNGC	2 cut(s)	1045, 1048
BlsI	GCNGC	2 cut(s)	1046, 1049
Bme1390I	CCNGG	1 cut(s)	498
Bme18I	GGWCC	1 cut(s)	1131
BmgT120I	GGNCC	1 cut(s)	1131
BmiI	GGNNCC	3 cut(s)	492, 1133, 1160
BmrFI	CCNGG	1 cut(s)	498
BmrI	ACTGGG	1 cut(s)	756
BmsI	GCATC	1 cut(s)	58
BmuI	ACTGGG	1 cut(s)	756
BoxI	GACNNNNGTC	1 cut(s)	768
Bpu14I	TTCGAA	2 cut(s)	257, 1191
BpuEI	CTTGAG	1 cut(s)	523
BsaAI	YACGTR	1 cut(s)	197
BsaBI	GATNNNNATC	1 cut(s)	947
BsaJI	CCNNGG	5 cut(s)	278, 496, 811, 1009, 1196
Bsc4I	CCNNNNNNNGG	1 cut(s)	543
Bse1I	ACTGG	4 cut(s)	173, 319, 751, 1183
Bse21I	CCTNAGG	1 cut(s)	1115
Bse8I	GATNNNNATC	1 cut(s)	947
BseBI	CCWGG	1 cut(s)	498
BseDI	CCNNGG	5 cut(s)	278, 496, 811, 1009, 1196
BseGI	GGATG	4 cut(s)	28, 377, 619, 689
BseJI	GATNNNNATC	1 cut(s)	947
BseLI	CCNNNNNNNGG	1 cut(s)	543
BseMII	CTCAG	4 cut(s)	97, 352, 432, 1106
BseNI	ACTGG	4 cut(s)	173, 319, 751, 1183
BseSI	GKGCMC	2 cut(s)	526, 1145
BseXI	GCAGC	1 cut(s)	1056
BshFI	GGCC	3 cut(s)	777, 864, 925
BsiHKAI	GWGCWC	4 cut(s)	84, 196, 363, 526
BslFI	GGGAC	2 cut(s)	67, 1117
BslI	CCNNNNNNNGG	1 cut(s)	543
BsmAI	GTCTC	1 cut(s)	368
BsmFI	GGGAC	2 cut(s)	67, 1117
BsmI	GAATGC	2 cut(s)	71, 996
BsnI	GGCC	3 cut(s)	777, 864, 925
Bsp119I	TTCGAA	2 cut(s)	257, 1191
Bsp1286I	GDGCHC	6 cut(s)	84, 196, 363, 495, 526, 1145
Bsp143I	GATC	5 cut(s)	307, 328, 919, 1057, 1082
Bsp19I	CCATGG	1 cut(s)	811
BspACI	CCGC	2 cut(s)	405, 1047
BspANI	GGCC	3 cut(s)	777, 864, 925
BspCNI	CTCAG	4 cut(s)	96, 351, 433, 1107
BspLI	GGNNCC	3 cut(s)	492, 1133, 1160
BspPI	GGATC	3 cut(s)	302, 323, 1090
BspQI	GCTCTTC	1 cut(s)	1098
BspT104I	TTCGAA	2 cut(s)	257, 1191
BsrI	ACTGG	4 cut(s)	173, 319, 751, 1183
BssECI	CCNNGG	5 cut(s)	278, 496, 811, 1009, 1196
BssMI	GATC	5 cut(s)	307, 328, 919, 1057, 1082
BssT1I	CCWWGG	3 cut(s)	278, 811, 1009
Bst2UI	CCWGG	1 cut(s)	498
Bst4CI	ACNGT	1 cut(s)	521
Bst6I	CTCTTC	1 cut(s)	1098
BstBAI	YACGTR	1 cut(s)	197
BstBI	TTCGAA	2 cut(s)	257, 1191
BstC8I	GCNNGC	2 cut(s)	181, 1042
BstDEI	CTNAG	6 cut(s)	83, 227, 338, 441, 582, 1115
BstDSI	CCRYGG	1 cut(s)	811
BstEII	GGTNACC	2 cut(s)	655, 756
BstF5I	GGATG	4 cut(s)	28, 377, 619, 689
BstKTI	GATC	5 cut(s)	310, 331, 922, 1060, 1085
BstMAI	GTCTC	1 cut(s)	368
BstMBI	GATC	5 cut(s)	307, 328, 919, 1057, 1082
BstMWI	GCNNNNNNNGC	1 cut(s)	490
BstNI	CCWGG	1 cut(s)	498
BstNSI	RCATGY	2 cut(s)	477, 861
BstPAI	GACNNNNGTC	1 cut(s)	768
BstPI	GGTNACC	2 cut(s)	655, 756
BstSCI	CCNGG	1 cut(s)	496
BstSFI	CTRYAG	1 cut(s)	57
BstSLI	GKGCMC	2 cut(s)	526, 1145
BstV1I	GCAGC	1 cut(s)	1056
BstX2I	RGATCY	1 cut(s)	1082
BstXI	CCANNNNNNTGG	1 cut(s)	1016
BstYI	RGATCY	1 cut(s)	1082
Bsu36I	CCTNAGG	1 cut(s)	1115
BsuRI	GGCC	3 cut(s)	777, 864, 925
BtgI	CCRYGG	1 cut(s)	811
BtsCI	GGATG	4 cut(s)	28, 377, 619, 689
BtsIMutI	CAGTG	3 cut(s)	91, 126, 526
Cac8I	GCNNGC	2 cut(s)	181, 1042
Cfr13I	GGNCC	1 cut(s)	1131
CseI	GACGC	1 cut(s)	384
Csp6I	GTAC	2 cut(s)	727, 842
CviAII	CATG	9 cut(s)	43, 218, 402, 474, 554, 773, 812, 858, 1108
CviQI	GTAC	2 cut(s)	727, 842
DdeI	CTNAG	6 cut(s)	83, 227, 338, 441, 582, 1115
DpnI	GATC	5 cut(s)	309, 330, 921, 1059, 1084
DpnII	GATC	5 cut(s)	307, 328, 919, 1057, 1082
DraIII	CACNNNGTG	1 cut(s)	200
EaeI	YGGCCR	1 cut(s)	862
Eam1104I	CTCTTC	1 cut(s)	1098
EarI	CTCTTC	1 cut(s)	1098
Ecl136II	GAGCTC	2 cut(s)	82, 361
Eco130I	CCWWGG	3 cut(s)	278, 811, 1009
Eco24I	GRGCYC	3 cut(s)	84, 363, 495
Eco47I	GGWCC	1 cut(s)	1131
Eco53kI	GAGCTC	2 cut(s)	82, 361
Eco57I	CTGAAG	2 cut(s)	470, 1151
Eco81I	CCTNAGG	1 cut(s)	1115
Eco91I	GGTNACC	2 cut(s)	655, 756
EcoICRI	GAGCTC	2 cut(s)	82, 361
EcoO65I	GGTNACC	2 cut(s)	655, 756
EcoRII	CCWGG	1 cut(s)	496
EcoT14I	CCWWGG	3 cut(s)	278, 811, 1009
EcoT22I	ATGCAT	2 cut(s)	73, 325
EcoT38I	GRGCYC	3 cut(s)	84, 363, 495
ErhI	CCWWGG	3 cut(s)	278, 811, 1009
FaeI	CATG	9 cut(s)	46, 221, 405, 477, 557, 776, 815, 861, 1111
FaqI	GGGAC	2 cut(s)	67, 1117
FatI	CATG	9 cut(s)	42, 217, 401, 473, 553, 772, 811, 857, 1107
FauNDI	CATATG	1 cut(s)	325
Fnu4HI	GCNGC	2 cut(s)	1045, 1048
FokI	GGATG	4 cut(s)	15, 364, 626, 696
FriOI	GRGCYC	3 cut(s)	84, 363, 495
Fsp4HI	GCNGC	2 cut(s)	1045, 1048
GluI	GCNGC	2 cut(s)	1045, 1048
HaeIII	GGCC	3 cut(s)	777, 864, 925
HgaI	GACGC	1 cut(s)	384
Hin1II	CATG	9 cut(s)	46, 221, 405, 477, 557, 776, 815, 861, 1111
HincII	GTYRAC	1 cut(s)	541
HindII	GTYRAC	1 cut(s)	541
HindIII	AAGCTT	1 cut(s)	482
HinfI	GANTC	1 cut(s)	635
HpaI	GTTAAC	1 cut(s)	541
HphI	GGTGA	2 cut(s)	667, 750
Hpy166II	GTNNAC	4 cut(s)	294, 524, 541, 914
Hpy188I	TCNGA	8 cut(s)	79, 191, 341, 514, 640, 678, 870, 1074
Hpy188III	TCNNGA	4 cut(s)	137, 234, 488, 733
Hpy8I	GTNNAC	4 cut(s)	294, 524, 541, 914
HpyAV	CCTTC	2 cut(s)	86, 231
HpyCH4III	ACNGT	1 cut(s)	521
HpyCH4IV	ACGT	2 cut(s)	196, 261
HpyCH4V	TGCA	9 cut(s)	71, 113, 179, 207, 323, 456, 477, 524, 986
HpyF10VI	GCNNNNNNNGC	1 cut(s)	490
HpyF3I	CTNAG	6 cut(s)	83, 227, 338, 441, 582, 1115
HpySE526I	ACGT	2 cut(s)	196, 261
Hsp92II	CATG	9 cut(s)	46, 221, 405, 477, 557, 776, 815, 861, 1111
KspAI	GTTAAC	1 cut(s)	541
Kzo9I	GATC	5 cut(s)	307, 328, 919, 1057, 1082
LguI	GCTCTTC	1 cut(s)	1098
LmnI	GCTCC	3 cut(s)	79, 366, 490
Lsp1109I	GCAGC	1 cut(s)	1056
LweI	GCATC	1 cut(s)	58
MaeII	ACGT	2 cut(s)	196, 261
MaeIII	GTNAC	5 cut(s)	549, 655, 713, 756, 1147
MalI	GATC	5 cut(s)	309, 330, 921, 1059, 1084
MboI	GATC	5 cut(s)	307, 328, 919, 1057, 1082
MboII	GAAGA	2 cut(s)	997, 1085
MfeI	CAATTG	2 cut(s)	382, 570
MflI	RGATCY	1 cut(s)	1082
MhlI	GDGCHC	6 cut(s)	84, 196, 363, 495, 526, 1145
MluCI	AATT	9 cut(s)	222, 382, 390, 570, 598, 790, 834, 933, 1206
MmeI	TCCRAC	2 cut(s)	129, 335
Mph1103I	ATGCAT	2 cut(s)	73, 325
MseI	TTAA	3 cut(s)	389, 540, 936
MslI	CAYNNNNRTG	1 cut(s)	630
MspA1I	CMGCKG	1 cut(s)	1047
MspR9I	CCNGG	1 cut(s)	498
MunI	CAATTG	2 cut(s)	382, 570
Mva1269I	GAATGC	2 cut(s)	71, 996
MvaI	CCWGG	1 cut(s)	498
MwoI	GCNNNNNNNGC	1 cut(s)	490
NcoI	CCATGG	1 cut(s)	811
NdeI	CATATG	1 cut(s)	325
NdeII	GATC	5 cut(s)	307, 328, 919, 1057, 1082
NlaIII	CATG	9 cut(s)	46, 221, 405, 477, 557, 776, 815, 861, 1111
NlaIV	GGNNCC	3 cut(s)	492, 1133, 1160
NmuCI	GTSAC	4 cut(s)	549, 655, 713, 756
NsiI	ATGCAT	2 cut(s)	73, 325
NspI	RCATGY	2 cut(s)	477, 861
NspV	TTCGAA	2 cut(s)	257, 1191
PciI	ACATGT	1 cut(s)	857
PciSI	GCTCTTC	1 cut(s)	1098
PctI	GAATGC	2 cut(s)	71, 996
PfeI	GAWTC	1 cut(s)	635
PkrI	GCNGC	2 cut(s)	1046, 1049
Ppu21I	YACGTR	1 cut(s)	197
PscI	ACATGT	1 cut(s)	857
PshAI	GACNNNNGTC	1 cut(s)	768
Psp124BI	GAGCTC	2 cut(s)	84, 363
Psp6I	CCWGG	1 cut(s)	496
PspEI	GGTNACC	2 cut(s)	655, 756
PspGI	CCWGG	1 cut(s)	496
PspN4I	GGNNCC	3 cut(s)	492, 1133, 1160
PspPI	GGNCC	1 cut(s)	1131
PsuI	RGATCY	1 cut(s)	1082
RsaI	GTAC	2 cut(s)	728, 843
RsaNI	GTAC	2 cut(s)	727, 842
RseI	CAYNNNNRTG	1 cut(s)	630
SacI	GAGCTC	2 cut(s)	84, 363
SapI	GCTCTTC	1 cut(s)	1098
SaqAI	TTAA	3 cut(s)	389, 540, 936
SatI	GCNGC	2 cut(s)	1045, 1048
Sau3AI	GATC	5 cut(s)	307, 328, 919, 1057, 1082
Sau96I	GGNCC	1 cut(s)	1131
ScrFI	CCNGG	1 cut(s)	498
SduI	GDGCHC	6 cut(s)	84, 196, 363, 495, 526, 1145
SfaNI	GCATC	1 cut(s)	58
SfcI	CTRYAG	1 cut(s)	57
SfuI	TTCGAA	2 cut(s)	257, 1191
SinI	GGWCC	1 cut(s)	1131
SmiMI	CAYNNNNRTG	1 cut(s)	630
SmlI	CTYRAG	1 cut(s)	502
SmoI	CTYRAG	1 cut(s)	502
Sse9I	AATT	9 cut(s)	222, 382, 390, 570, 598, 790, 834, 933, 1206
SsiI	CCGC	2 cut(s)	405, 1047
SstI	GAGCTC	2 cut(s)	84, 363
StyD4I	CCNGG	1 cut(s)	496
StyI	CCWWGG	3 cut(s)	278, 811, 1009
TaaI	ACNGT	1 cut(s)	521
TaiI	ACGT	2 cut(s)	199, 264
TaqI	TCGA	3 cut(s)	257, 1191, 1203
TasI	AATT	9 cut(s)	222, 382, 390, 570, 598, 790, 834, 933, 1206
TatI	WGTACW	1 cut(s)	726
TauI	GCSGC	1 cut(s)	1050
TfiI	GAWTC	1 cut(s)	635
Tru1I	TTAA	3 cut(s)	389, 540, 936
Tru9I	TTAA	3 cut(s)	389, 540, 936
TscAI	CASTG	3 cut(s)	91, 126, 526
TseFI	GTSAC	4 cut(s)	549, 655, 713, 756
TseI	GCWGC	1 cut(s)	1044
Tsp45I	GTSAC	4 cut(s)	549, 655, 713, 756
TspDTI	ATGAA	6 cut(s)	105, 234, 444, 614, 887, 1124
TspGWI	ACGGA	3 cut(s)	169, 526, 1095
TspRI	CASTG	3 cut(s)	91, 126, 526
VneI	GTGCAC	1 cut(s)	522
VpaK11BI	GGWCC	1 cut(s)	1131
XapI	RAATTY	3 cut(s)	222, 598, 1206
XceI	RCATGY	2 cut(s)	477, 861
Zsp2I	ATGCAT	2 cut(s)	73, 325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.