Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0006718

Physical Location & Seq

Genomic Coordinates Reverse (-)

17183105 .. 17186293

Gene Structure 3189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027959

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGGAAAGAGGAAAAGAAGGTTACCCCATGTGGTTTGGTATTATGGATTGCCTTGTTATAGTTGACCCATTTGGCCACACAGGTTTTTTCTGTTTACACCTCTTGATCATGGCAGAAGAAACGTCATGGTTTAGCCATTACCTTGATGACAGGCCAAGAGAGATTGGGGAGTATGAGTCATTTGCAGAGCTGAGTGATGAAGGGAATCAAGAAGTTACTGTAGTTTCGGTTGAATCTTTCCTTCCTGATGAACTGTTGGAGCGGATAATAGCATATCTACCAATTGCAAGCATTTTCAGAGCACAGTCTGTGTGCAAAAGGTGGAATGGCATTGTTAGTTCAAAAAAATATATATCGACCAATTCACCCTTGCTACCGCAAAAACCTTGGTACTTTATGTTTACAAGCTGCAATGAACCAATTGGTTATGCATACGATCCTGTACTTAAAAAGTGTGATAGTAGAAGTGAGTTATACGTCTGCAACCCTCTTACGAAAATATACAAGAAGCTTGAGGAGCCTCCTGGCTTGAGATTTTCTGATTACGGTGCACTTGCAATTTCGGCTAACAGGATCTCAAGAAGTTATACTATTACAGTGGTGAAATCTAAGCAAGTTCCTGGAAATTTTTTCCAATGGGATGTTTCTGTTCACATTTATGATTCACAAACAACAATGTGGCTGTCCCCTGTGACAGAAGTTCTGACAGGATGGAGAGGTGGGGATGAGAGTGTGGTCTGTGATGGGGTTTTGTACTTCTTGATTTACTCTACTGGGGGTGGGACACCAGAGAATCGTCATGGCCTAATCTCCTACAATCTCTCTGCTCGCTCTTCCCATGGGCAGTTGATCCGTAGTTTCATTCCTGTACCTTGTGCTCTTACATGTGGCCGTCTAATGAACTTGAGGGAGAAGCTGGTTATGGTGGGAGGAATTGGGAAACCAGATCGCCCTGACATAATTAAGGGGATTGGTATCTGGATTCTAAATGGGAAGGTGTGGCAAGAGATTGCTCGTATGCCTCACAAGTTTTTCCAAGGATTTGGAGAATTGGATGATGTTTTTGCCAGCAGTGGTATAGATGATCTCATATACATCCAGAGCTATGGAGCTCCAGCTCTTCTTGCGTTTGACATGCACTTGAAACATTGGAGATGGTCACAGAAGTGCCCGGTAACAAAGAAGTTTCCTCTCCAGCTCTTTTCTGGTTTTTGTTTCGAACCTCGGCTTGAAGTAAATCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048731 GO:0048856 GO:0070647 GO:0071704 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

415

Amino Acids

47.05

Weight (kDa)

6.17

Isoelectric Point (pI)

44.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	81 - 116	2.8e-09	F-box domain
F-box-like	PF12937	81 - 114	7.2e-09	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006718)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61590 AT3G61590 AT3G61590 AT3G61590
fragaria_vesca	FvH4_7g15730 FvH4_7g15730 FvH4_7g15730
malus_domestica	MD01G1073800.v1.1 MD07G1142500.v1.1
prunus_persica	Prupe.2G181900_v2.0.a1 Prupe.2G181900_v2.0.a1
pyrus_communis	pycom01g10300 pycom07g14130
rosa_chinensis	RchiOBHm_Chr1g0358441
rosa_laevigata	RLG00000002357 RLG00000027959
rosa_multiflora	Rmu_co8469433.1_g000001 Rmu_sc0008220.1_g000002
rosa_roxburghii	Rroxscaffold_4G00297920
rosa_rugosa	Rorug01G0262000
rosa_samantha	Rh1AG276300 Rh1BG242900 Rh1CG260000 Rh1DG271300
rosa_wichuraiana	Rw1G024590 Rw7G028420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	262
AciI	CCGC	2 cut(s)	262, 377
AclWI	GGATC	3 cut(s)	431, 581, 844
AcoI	YGGCCR	2 cut(s)	73, 889
AcsI	RAATTY	1 cut(s)	625
AfaI	GTAC	4 cut(s)	392, 444, 755, 870
AflIII	ACRYGT	1 cut(s)	884
AgsI	TTSAA	4 cut(s)	233, 342, 1144, 1232
AjnI	CCWGG	2 cut(s)	523, 619
AleI	CACNNNNGTG	1 cut(s)	1165
AluBI	AGCT	8 cut(s)	190, 408, 511, 916, 1104, 1112, 1118, 1198
AluI	AGCT	8 cut(s)	190, 408, 511, 916, 1104, 1112, 1118, 1198
Alw21I	GWGCWC	4 cut(s)	304, 553, 880, 1114
Alw44I	GTGCAC	1 cut(s)	549
AlwI	GGATC	3 cut(s)	431, 581, 844
AoxI	GGCC	4 cut(s)	73, 152, 802, 889
ApaLI	GTGCAC	1 cut(s)	549
ApeKI	GCWGC	1 cut(s)	408
ApoI	RAATTY	1 cut(s)	625
AsuC2I	CCSGG	1 cut(s)	1172
AsuHPI	GGTGA	2 cut(s)	357, 613
AsuII	TTCGAA	1 cut(s)	1218
BaeGI	GKGCMC	2 cut(s)	553, 1172
BalI	TGGCCA	1 cut(s)	75
BanII	GRGCYC	1 cut(s)	1114
Bbv12I	GWGCWC	4 cut(s)	304, 553, 880, 1114
BbvI	GCAGC	1 cut(s)	395
BccI	CCATC	3 cut(s)	705, 737, 1149
BceAI	ACGGC	1 cut(s)	876
BciT130I	CCWGG	2 cut(s)	525, 621
BclI	TGATCA	1 cut(s)	105
BcnI	CCSGG	1 cut(s)	1172
BfmI	CTRYAG	1 cut(s)	219
BisI	GCNGC	1 cut(s)	409
BlsI	GCNGC	1 cut(s)	410
Bme1390I	CCNGG	3 cut(s)	525, 621, 1172
BmiI	GGNNCC	1 cut(s)	519
BmrFI	CCNGG	3 cut(s)	525, 621, 1172
BmrI	ACTGGG	1 cut(s)	783
BmuI	ACTGGG	1 cut(s)	783
BpmI	CTGGAG	2 cut(s)	1098, 1178
Bpu14I	TTCGAA	1 cut(s)	1218
BpuEI	CTTGAG	4 cut(s)	533, 550, 562, 925
BpuMI	CCSGG	1 cut(s)	1172
BsaBI	GATNNNNATC	1 cut(s)	974
BsaJI	CCNNGG	4 cut(s)	386, 838, 1036, 1223
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
Bse1I	ACTGG	1 cut(s)	778
Bse3DI	GCAATG	1 cut(s)	418
Bse8I	GATNNNNATC	1 cut(s)	974
BseBI	CCWGG	2 cut(s)	525, 621
BseDI	CCNNGG	4 cut(s)	386, 838, 1036, 1223
BseGI	GGATG	5 cut(s)	646, 716, 730, 1060, 1095
BseJI	GATNNNNATC	1 cut(s)	974
BseMI	GCAATG	1 cut(s)	418
BseMII	CTCAG	1 cut(s)	182
BseNI	ACTGG	1 cut(s)	778
BseRI	GAGGAG	1 cut(s)	530
BseSI	GKGCMC	2 cut(s)	553, 1172
BseXI	GCAGC	1 cut(s)	395
BshFI	GGCC	4 cut(s)	75, 154, 804, 891
BsiHKAI	GWGCWC	4 cut(s)	304, 553, 880, 1114
BsiSI	CCGG	1 cut(s)	1172
BslFI	GGGAC	2 cut(s)	670, 796
BsmFI	GGGAC	2 cut(s)	670, 796
BsnI	GGCC	4 cut(s)	75, 154, 804, 891
Bsp119I	TTCGAA	1 cut(s)	1218
Bsp1286I	GDGCHC	5 cut(s)	304, 553, 880, 1114, 1172
Bsp143I	GATC	6 cut(s)	105, 436, 573, 849, 946, 1084
Bsp19I	CCATGG	1 cut(s)	838
BspACI	CCGC	2 cut(s)	262, 377
BspANI	GGCC	4 cut(s)	75, 154, 804, 891
BspCNI	CTCAG	1 cut(s)	183
BspLI	GGNNCC	1 cut(s)	519
BspPI	GGATC	3 cut(s)	431, 581, 844
BspQI	GCTCTTC	2 cut(s)	838, 1125
BspT104I	TTCGAA	1 cut(s)	1218
BsrBI	CCGCTC	1 cut(s)	262
BsrDI	GCAATG	1 cut(s)	418
BsrI	ACTGG	1 cut(s)	778
BssECI	CCNNGG	4 cut(s)	386, 838, 1036, 1223
BssMI	GATC	6 cut(s)	105, 436, 573, 849, 946, 1084
BssT1I	CCWWGG	3 cut(s)	386, 838, 1036
Bst2UI	CCWGG	2 cut(s)	525, 621
Bst4CI	ACNGT	5 cut(s)	220, 255, 306, 548, 598
Bst6I	CTCTTC	2 cut(s)	838, 1125
BstBI	TTCGAA	1 cut(s)	1218
BstC8I	GCNNGC	3 cut(s)	289, 829, 1069
BstDEI	CTNAG	2 cut(s)	191, 609
BstDSI	CCRYGG	1 cut(s)	838
BstEII	GGTNACC	1 cut(s)	20
BstF5I	GGATG	5 cut(s)	646, 716, 730, 1060, 1095
BstKTI	GATC	6 cut(s)	108, 439, 576, 852, 949, 1087
BstMBI	GATC	6 cut(s)	105, 436, 573, 849, 946, 1084
BstMWI	GCNNNNNNNGC	3 cut(s)	517, 563, 1124
BstNI	CCWGG	2 cut(s)	525, 621
BstNSI	RCATGY	2 cut(s)	888, 1138
BstPI	GGTNACC	1 cut(s)	20
BstSCI	CCNGG	3 cut(s)	523, 619, 1170
BstSFI	CTRYAG	1 cut(s)	219
BstSLI	GKGCMC	2 cut(s)	553, 1172
BstV1I	GCAGC	1 cut(s)	395
BstX2I	RGATCY	1 cut(s)	573
BstXI	CCANNNNNNTGG	2 cut(s)	1043, 1106
BstYI	RGATCY	1 cut(s)	573
BsuRI	GGCC	4 cut(s)	75, 154, 804, 891
BtgI	CCRYGG	1 cut(s)	838
BtsCI	GGATG	5 cut(s)	646, 716, 730, 1060, 1095
BtsI	GCAGTG	1 cut(s)	1078
BtsIMutI	CAGTG	2 cut(s)	603, 1078
Cac8I	GCNNGC	3 cut(s)	289, 829, 1069
Csp6I	GTAC	4 cut(s)	391, 443, 754, 869
CviAII	CATG	7 cut(s)	28, 109, 126, 800, 839, 885, 1135
CviQI	GTAC	4 cut(s)	391, 443, 754, 869
DdeI	CTNAG	2 cut(s)	191, 609
DpnI	GATC	6 cut(s)	107, 438, 575, 851, 948, 1086
DpnII	GATC	6 cut(s)	105, 436, 573, 849, 946, 1084
EaeI	YGGCCR	2 cut(s)	73, 889
Eam1104I	CTCTTC	2 cut(s)	838, 1125
EarI	CTCTTC	2 cut(s)	838, 1125
Ecl136II	GAGCTC	1 cut(s)	1112
Eco130I	CCWWGG	3 cut(s)	386, 838, 1036
Eco24I	GRGCYC	1 cut(s)	1114
Eco53kI	GAGCTC	1 cut(s)	1112
Eco91I	GGTNACC	1 cut(s)	20
EcoICRI	GAGCTC	1 cut(s)	1112
EcoO65I	GGTNACC	1 cut(s)	20
EcoRII	CCWGG	2 cut(s)	523, 619
EcoT14I	CCWWGG	3 cut(s)	386, 838, 1036
EcoT22I	ATGCAT	1 cut(s)	433
EcoT38I	GRGCYC	1 cut(s)	1114
ErhI	CCWWGG	3 cut(s)	386, 838, 1036
FaeI	CATG	7 cut(s)	31, 112, 129, 803, 842, 888, 1138
FaqI	GGGAC	2 cut(s)	670, 796
FatI	CATG	7 cut(s)	27, 108, 125, 799, 838, 884, 1134
FbaI	TGATCA	1 cut(s)	105
Fnu4HI	GCNGC	1 cut(s)	409
FokI	GGATG	5 cut(s)	653, 723, 737, 1067, 1082
FriOI	GRGCYC	1 cut(s)	1114
Fsp4HI	GCNGC	1 cut(s)	409
GluI	GCNGC	1 cut(s)	409
GsuI	CTGGAG	2 cut(s)	1098, 1178
HaeIII	GGCC	4 cut(s)	75, 154, 804, 891
HapII	CCGG	1 cut(s)	1172
Hin1II	CATG	7 cut(s)	31, 112, 129, 803, 842, 888, 1138
HincII	GTYRAC	1 cut(s)	64
HindII	GTYRAC	1 cut(s)	64
HindIII	AAGCTT	1 cut(s)	509
HinfI	GANTC	6 cut(s)	176, 205, 233, 662, 793, 982
HpaII	CCGG	1 cut(s)	1172
HphI	GGTGA	2 cut(s)	357, 613
Hpy166II	GTNNAC	5 cut(s)	64, 95, 402, 551, 652
Hpy188I	TCNGA	3 cut(s)	299, 541, 705
Hpy188III	TCNNGA	7 cut(s)	103, 209, 245, 579, 760, 979, 1099
Hpy8I	GTNNAC	5 cut(s)	64, 95, 402, 551, 652
HpyAV	CCTTC	4 cut(s)	11, 194, 251, 988
HpyCH4III	ACNGT	5 cut(s)	220, 255, 306, 548, 598
HpyCH4IV	ACGT	2 cut(s)	122, 477
HpyCH4V	TGCA	9 cut(s)	185, 287, 315, 411, 431, 483, 551, 557, 1138
HpyF10VI	GCNNNNNNNGC	3 cut(s)	517, 563, 1124
HpyF3I	CTNAG	2 cut(s)	191, 609
HpySE526I	ACGT	2 cut(s)	122, 477
Hsp92II	CATG	7 cut(s)	31, 112, 129, 803, 842, 888, 1138
Ksp22I	TGATCA	1 cut(s)	105
Kzo9I	GATC	6 cut(s)	105, 436, 573, 849, 946, 1084
LguI	GCTCTTC	2 cut(s)	838, 1125
LmnI	GCTCC	4 cut(s)	259, 517, 1109, 1117
Lsp1109I	GCAGC	1 cut(s)	395
MaeII	ACGT	2 cut(s)	122, 477
MaeIII	GTNAC	5 cut(s)	20, 214, 691, 1158, 1174
MalI	GATC	6 cut(s)	107, 438, 575, 851, 948, 1086
MbiI	CCGCTC	1 cut(s)	262
MboI	GATC	6 cut(s)	105, 436, 573, 849, 946, 1084
MboII	GAAGA	3 cut(s)	128, 825, 1112
MfeI	CAATTG	2 cut(s)	282, 420
MflI	RGATCY	1 cut(s)	573
MhlI	GDGCHC	5 cut(s)	304, 553, 880, 1114, 1172
MlsI	TGGCCA	1 cut(s)	75
MluCI	AATT	8 cut(s)	282, 361, 420, 558, 625, 933, 960, 1049
MluNI	TGGCCA	1 cut(s)	75
MlyI	GAGTC	1 cut(s)	185
MmeI	TCCRAC	1 cut(s)	237
Mox20I	TGGCCA	1 cut(s)	75
Mph1103I	ATGCAT	1 cut(s)	433
MscI	TGGCCA	1 cut(s)	75
MseI	TTAA	2 cut(s)	447, 963
MslI	CAYNNNNRTG	2 cut(s)	657, 1165
Msp20I	TGGCCA	1 cut(s)	75
MspI	CCGG	1 cut(s)	1172
MspR9I	CCNGG	3 cut(s)	525, 621, 1172
MunI	CAATTG	2 cut(s)	282, 420
MvaI	CCWGG	2 cut(s)	525, 621
MwoI	GCNNNNNNNGC	3 cut(s)	517, 563, 1124
NciI	CCSGG	1 cut(s)	1172
NcoI	CCATGG	1 cut(s)	838
NdeII	GATC	6 cut(s)	105, 436, 573, 849, 946, 1084
NlaIII	CATG	7 cut(s)	31, 112, 129, 803, 842, 888, 1138
NlaIV	GGNNCC	1 cut(s)	519
NmeAIII	GCCGAG	1 cut(s)	1204
NmuCI	GTSAC	2 cut(s)	691, 1158
NsiI	ATGCAT	1 cut(s)	433
NspI	RCATGY	2 cut(s)	888, 1138
NspV	TTCGAA	1 cut(s)	1218
OliI	CACNNNNGTG	1 cut(s)	1165
PciI	ACATGT	1 cut(s)	884
PciSI	GCTCTTC	2 cut(s)	838, 1125
PfeI	GAWTC	5 cut(s)	205, 233, 662, 793, 982
PfoI	TCCNGGA	1 cut(s)	619
PkrI	GCNGC	1 cut(s)	410
PleI	GAGTC	1 cut(s)	184
PpsI	GAGTC	1 cut(s)	184
PscI	ACATGT	1 cut(s)	884
Psp124BI	GAGCTC	1 cut(s)	1114
Psp6I	CCWGG	2 cut(s)	523, 619
PspEI	GGTNACC	1 cut(s)	20
PspGI	CCWGG	2 cut(s)	523, 619
PspN4I	GGNNCC	1 cut(s)	519
PsuI	RGATCY	1 cut(s)	573
RsaI	GTAC	4 cut(s)	392, 444, 755, 870
RsaNI	GTAC	4 cut(s)	391, 443, 754, 869
RseI	CAYNNNNRTG	2 cut(s)	657, 1165
SacI	GAGCTC	1 cut(s)	1114
SapI	GCTCTTC	2 cut(s)	838, 1125
SaqAI	TTAA	2 cut(s)	447, 963
SatI	GCNGC	1 cut(s)	409
Sau3AI	GATC	6 cut(s)	105, 436, 573, 849, 946, 1084
SchI	GAGTC	1 cut(s)	185
ScrFI	CCNGG	3 cut(s)	525, 621, 1172
SduI	GDGCHC	5 cut(s)	304, 553, 880, 1114, 1172
SfcI	CTRYAG	1 cut(s)	219
SfuI	TTCGAA	1 cut(s)	1218
SmiMI	CAYNNNNRTG	2 cut(s)	657, 1165
SmlI	CTYRAG	4 cut(s)	512, 529, 577, 904
SmoI	CTYRAG	4 cut(s)	512, 529, 577, 904
Sse9I	AATT	8 cut(s)	282, 361, 420, 558, 625, 933, 960, 1049
SsiI	CCGC	2 cut(s)	262, 377
SstI	GAGCTC	1 cut(s)	1114
StyD4I	CCNGG	3 cut(s)	523, 619, 1170
StyI	CCWWGG	3 cut(s)	386, 838, 1036
TaaI	ACNGT	5 cut(s)	220, 255, 306, 548, 598
TaiI	ACGT	2 cut(s)	125, 480
TaqI	TCGA	2 cut(s)	356, 1218
TasI	AATT	8 cut(s)	282, 361, 420, 558, 625, 933, 960, 1049
TatI	WGTACW	2 cut(s)	442, 753
TfiI	GAWTC	5 cut(s)	205, 233, 662, 793, 982
Tru1I	TTAA	2 cut(s)	447, 963
Tru9I	TTAA	2 cut(s)	447, 963
TscAI	CASTG	2 cut(s)	603, 1078
TseFI	GTSAC	2 cut(s)	691, 1158
TseI	GCWGC	1 cut(s)	408
Tsp45I	GTSAC	2 cut(s)	691, 1158
TspDTI	ATGAA	5 cut(s)	213, 264, 429, 850, 914
TspGWI	ACGGA	1 cut(s)	842
TspRI	CASTG	2 cut(s)	603, 1078
VneI	GTGCAC	1 cut(s)	549
XapI	RAATTY	1 cut(s)	625
XceI	RCATGY	2 cut(s)	888, 1138
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1202
Zsp2I	ATGCAT	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.