Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0006718

Physical Location & Seq

Genomic Coordinates Forward (+)

13563155 .. 13566549

Gene Structure 3395 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g15730.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGGCGGAAGAAACATCATGGTTCAGCCATTACCTCGATGACAGACCAAGAGAGGTTGGGGAGTATGAATCATATGCAGAGCTGAGTGATGAAGGAAGTCAAGAAGTTACTGTAGTTTCAGTTGAATCTTTCCTTCCTGATGAACTCTTGGAACGGATAATAGCATATCTACCAATTGCAAGCATTTTCAGAGCACAGTCTGTGTGCAAAAGGTGGAATGGCATTGTTAATTCAAAAAAATATATATCAACCAATTCACCCTTGCCACCACAAAAACCTTGGTACTTTATGTTTACAAGCTGCAGTGAACCGATTGGTTATGCATATGATCCTGTACTTAGAAAGTGGTATGCCATTGAGCTGCCCTGCATTCAGACATCAAATTGGTGCATTGCTTCCTCATGTGGTTTGGTTTGCTTTATGGACAATGATAGTAGAAGTGAGTTATACGTCTGCAACCCTCTTACCAAAATATACAAGAAGCTTGAGGAGCTTCCTGGCTTGAGATTTTCGGATTGTTACAGTGCACTTGCGTTTTGGGCTAACAGGGTCTCAAGAAGTTATACTATCACAGTGGTGAAATCTAAGCAAGTTGCTGGAAATTTTTTCCAATGGGATGTTTCTGTTCATATATATGATTCACAGACAACAATGTGGCTTTCCCCTGTGACAGAAGTTCTGACAGGATGGAGAGGTGGCGATGAGAGTGTGGTATGTGATGGGGTTTTGTACTTCTTAATTTACTCAACAGGGGGTGGGGCACCAGAGAATCGTCATGGCCTACTCTCCTACAATCTCTCTGCTCGCTCTTCCCATGGGCAGTTGATCCGTAGTTTCATTCCTGTACCTTGTGCTCTTACATGTGGCCGTCTAATGAACTTGAGGGAGAAGCTGGTTATGGTGGGAGGAATTGGGAAACCAGATCGCCCTGACATAATTAAGGGGATTGGTATATGGGTCCTAAATGGGAGTGTGTGGCAAGAGATTGCCCGTATGCCTCACAAGTATTTCCAAGGATTTGGAGAATTCGATGAAGTTTTTGCTAGCAGTGGTGCAGATGATCTCATATACATCCAGAGTTATGGAGGTCCGGCTCTTCTTCTGTTTGACATGCGCTTGAAACATTGGAGATGGTCACAGAAGTGCCCGATAACCAAGAGGTTCCCTCTCCAGCTCTTTACTGGTTTTTGTTTCGAACCTCGACTTGAAGTAAATCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048731 GO:0048856 GO:0070647 GO:0071704 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

407

Amino Acids

46.21

Weight (kDa)

5.95

Isoelectric Point (pI)

47.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	45 - 78	5.4e-09	F-box-like
F-box	PF00646	45 - 80	2.2e-09	F-box domain
b-prop_At3g26010-like	PF24750	128 - 276	1.8e-07	F-box protein At3g26010-like, beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006718)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61590 AT3G61590 AT3G61590 AT3G61590
fragaria_vesca	FvH4_7g15730 FvH4_7g15730 FvH4_7g15730
malus_domestica	MD01G1073800.v1.1 MD07G1142500.v1.1
prunus_persica	Prupe.2G181900_v2.0.a1 Prupe.2G181900_v2.0.a1
pyrus_communis	pycom01g10300 pycom07g14130
rosa_chinensis	RchiOBHm_Chr1g0358441
rosa_laevigata	RLG00000002357 RLG00000027959
rosa_multiflora	Rmu_co8469433.1_g000001 Rmu_sc0008220.1_g000002
rosa_roxburghii	Rroxscaffold_4G00297920
rosa_rugosa	Rorug01G0262000
rosa_samantha	Rh1AG276300 Rh1BG242900 Rh1CG260000 Rh1DG271300
rosa_wichuraiana	Rw1G024590 Rw7G028420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	760
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	2 cut(s)	323, 820
AcoI	YGGCCR	1 cut(s)	865
AcsI	RAATTY	2 cut(s)	601, 1025
AfaI	GTAC	4 cut(s)	284, 336, 731, 846
AflIII	ACRYGT	1 cut(s)	860
AgsI	TTSAA	4 cut(s)	125, 234, 1120, 1208
AjnI	CCWGG	1 cut(s)	496
AleI	CACNNNNGTG	2 cut(s)	575, 1141
AluBI	AGCT	7 cut(s)	82, 300, 361, 484, 493, 892, 1174
AluI	AGCT	7 cut(s)	82, 300, 361, 484, 493, 892, 1174
Alw21I	GWGCWC	3 cut(s)	196, 529, 856
Alw26I	GTCTC	1 cut(s)	556
Alw44I	GTGCAC	1 cut(s)	525
AlwI	GGATC	2 cut(s)	323, 820
AoxI	GGCC	2 cut(s)	778, 865
ApaLI	GTGCAC	1 cut(s)	525
ApeKI	GCWGC	2 cut(s)	300, 361
ApoI	RAATTY	2 cut(s)	601, 1025
AspLEI	GCGC	1 cut(s)	1116
AspS9I	GGNCC	2 cut(s)	958, 1088
AsuHPI	GGTGA	2 cut(s)	249, 589
AsuII	TTCGAA	1 cut(s)	1194
AsuNHI	GCTAGC	1 cut(s)	1043
AvaII	GGWCC	2 cut(s)	958, 1088
BaeGI	GKGCMC	3 cut(s)	529, 763, 1148
BanI	GGYRCC	1 cut(s)	760
Bbv12I	GWGCWC	3 cut(s)	196, 529, 856
BbvI	GCAGC	2 cut(s)	287, 348
BccI	CCATC	3 cut(s)	681, 713, 1125
BceAI	ACGGC	1 cut(s)	852
BciT130I	CCWGG	1 cut(s)	498
BcoDI	GTCTC	1 cut(s)	556
BfaI	CTAG	1 cut(s)	1044
BfmI	CTRYAG	2 cut(s)	111, 301
BisI	GCNGC	2 cut(s)	301, 362
BlsI	GCNGC	2 cut(s)	302, 363
Bme1390I	CCNGG	1 cut(s)	498
Bme18I	GGWCC	2 cut(s)	958, 1088
BmgT120I	GGNCC	2 cut(s)	958, 1088
BmiI	GGNNCC	3 cut(s)	762, 959, 1163
BmrFI	CCNGG	1 cut(s)	498
BmtI	GCTAGC	1 cut(s)	1047
BplI	GAGNNNNNCTC	2 cut(s)	1150, 1182
BpmI	CTGGAG	1 cut(s)	1154
Bpu14I	TTCGAA	1 cut(s)	1194
BpuEI	CTTGAG	4 cut(s)	506, 523, 538, 901
BsaI	GGTCTC	1 cut(s)	556
BsaJI	CCNNGG	3 cut(s)	278, 814, 1012
Bse1I	ACTGG	1 cut(s)	1186
Bse3DI	GCAATG	1 cut(s)	390
BseBI	CCWGG	1 cut(s)	498
BseDI	CCNNGG	3 cut(s)	278, 814, 1012
BseGI	GGATG	3 cut(s)	622, 692, 1071
BseMI	GCAATG	1 cut(s)	390
BseMII	CTCAG	1 cut(s)	74
BseNI	ACTGG	1 cut(s)	1186
BseRI	GAGGAG	1 cut(s)	503
BseSI	GKGCMC	3 cut(s)	529, 763, 1148
BseXI	GCAGC	2 cut(s)	287, 348
BsgI	GTGCAG	1 cut(s)	1074
BshFI	GGCC	2 cut(s)	780, 867
BshNI	GGYRCC	1 cut(s)	760
BsiHKAI	GWGCWC	3 cut(s)	196, 529, 856
BsiSI	CCGG	1 cut(s)	1091
BsmAI	GTCTC	1 cut(s)	556
BsmI	GAATGC	1 cut(s)	369
BsnI	GGCC	2 cut(s)	780, 867
Bso31I	GGTCTC	1 cut(s)	556
Bsp119I	TTCGAA	1 cut(s)	1194
Bsp1286I	GDGCHC	5 cut(s)	196, 529, 763, 856, 1148
Bsp143I	GATC	4 cut(s)	328, 825, 922, 1060
Bsp19I	CCATGG	1 cut(s)	814
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	2 cut(s)	780, 867
BspCNI	CTCAG	1 cut(s)	75
BspLI	GGNNCC	3 cut(s)	762, 959, 1163
BspMAI	CTGCAG	1 cut(s)	305
BspOI	GCTAGC	1 cut(s)	1047
BspPI	GGATC	2 cut(s)	323, 820
BspQI	GCTCTTC	2 cut(s)	814, 1101
BspT104I	TTCGAA	1 cut(s)	1194
BspT107I	GGYRCC	1 cut(s)	760
BspTNI	GGTCTC	1 cut(s)	556
BsrDI	GCAATG	1 cut(s)	390
BsrI	ACTGG	1 cut(s)	1186
BssECI	CCNNGG	3 cut(s)	278, 814, 1012
BssMI	GATC	4 cut(s)	328, 825, 922, 1060
BssT1I	CCWWGG	3 cut(s)	278, 814, 1012
Bst2UI	CCWGG	1 cut(s)	498
Bst4CI	ACNGT	4 cut(s)	112, 198, 524, 574
Bst6I	CTCTTC	2 cut(s)	814, 1101
BstBI	TTCGAA	1 cut(s)	1194
BstC8I	GCNNGC	3 cut(s)	181, 805, 1045
BstDEI	CTNAG	3 cut(s)	83, 338, 585
BstDSI	CCRYGG	1 cut(s)	814
BstF5I	GGATG	3 cut(s)	622, 692, 1071
BstHHI	GCGC	1 cut(s)	1116
BstKTI	GATC	4 cut(s)	331, 828, 925, 1063
BstMAI	GTCTC	1 cut(s)	556
BstMBI	GATC	4 cut(s)	328, 825, 922, 1060
BstMWI	GCNNNNNNNGC	2 cut(s)	490, 539
BstNI	CCWGG	1 cut(s)	498
BstNSI	RCATGY	2 cut(s)	864, 1114
BstSCI	CCNGG	1 cut(s)	496
BstSFI	CTRYAG	2 cut(s)	111, 301
BstSLI	GKGCMC	3 cut(s)	529, 763, 1148
BstV1I	GCAGC	2 cut(s)	287, 348
BstXI	CCANNNNNNTGG	2 cut(s)	1019, 1082
BsuRI	GGCC	2 cut(s)	780, 867
BtgI	CCRYGG	1 cut(s)	814
BtgZI	GCGATG	1 cut(s)	714
BtsCI	GGATG	3 cut(s)	622, 692, 1071
BtsI	GCAGTG	2 cut(s)	310, 1054
BtsIMutI	CAGTG	4 cut(s)	310, 529, 579, 1054
Cac8I	GCNNGC	3 cut(s)	181, 805, 1045
CfoI	GCGC	1 cut(s)	1116
Cfr13I	GGNCC	2 cut(s)	958, 1088
Csp6I	GTAC	4 cut(s)	283, 335, 730, 845
CviAII	CATG	6 cut(s)	18, 402, 776, 815, 861, 1111
CviQI	GTAC	4 cut(s)	283, 335, 730, 845
DdeI	CTNAG	3 cut(s)	83, 338, 585
DpnI	GATC	4 cut(s)	330, 827, 924, 1062
DpnII	GATC	4 cut(s)	328, 825, 922, 1060
EaeI	YGGCCR	1 cut(s)	865
Eam1104I	CTCTTC	2 cut(s)	814, 1101
EarI	CTCTTC	2 cut(s)	814, 1101
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	3 cut(s)	278, 814, 1012
Eco31I	GGTCTC	1 cut(s)	556
Eco47I	GGWCC	2 cut(s)	958, 1088
EcoO109I	RGGNCCY	1 cut(s)	958
EcoRI	GAATTC	1 cut(s)	1025
EcoRII	CCWGG	1 cut(s)	496
EcoT14I	CCWWGG	3 cut(s)	278, 814, 1012
EcoT22I	ATGCAT	1 cut(s)	325
ErhI	CCWWGG	3 cut(s)	278, 814, 1012
FaeI	CATG	6 cut(s)	21, 405, 779, 818, 864, 1114
FatI	CATG	6 cut(s)	17, 401, 775, 814, 860, 1110
FauNDI	CATATG	2 cut(s)	73, 325
Fnu4HI	GCNGC	2 cut(s)	301, 362
FokI	GGATG	3 cut(s)	629, 699, 1058
Fsp4HI	GCNGC	2 cut(s)	301, 362
FspBI	CTAG	1 cut(s)	1044
GlaI	GCGC	1 cut(s)	1115
GluI	GCNGC	2 cut(s)	301, 362
GsuI	CTGGAG	1 cut(s)	1154
HaeIII	GGCC	2 cut(s)	780, 867
HapII	CCGG	1 cut(s)	1091
HhaI	GCGC	1 cut(s)	1116
Hin1II	CATG	6 cut(s)	21, 405, 779, 818, 864, 1114
Hin6I	GCGC	1 cut(s)	1114
HinP1I	GCGC	1 cut(s)	1114
HindIII	AAGCTT	1 cut(s)	482
HinfI	GANTC	4 cut(s)	68, 125, 638, 769
HpaII	CCGG	1 cut(s)	1091
HphI	GGTGA	2 cut(s)	249, 589
Hpy166II	GTNNAC	3 cut(s)	294, 308, 527
Hpy188I	TCNGA	4 cut(s)	191, 375, 514, 681
Hpy188III	TCNNGA	4 cut(s)	101, 137, 555, 1075
Hpy8I	GTNNAC	3 cut(s)	294, 308, 527
HpyAV	CCTTC	2 cut(s)	86, 143
HpyCH4III	ACNGT	4 cut(s)	112, 198, 524, 574
HpyCH4IV	ACGT	1 cut(s)	450
HpyF10VI	GCNNNNNNNGC	2 cut(s)	490, 539
HpyF3I	CTNAG	3 cut(s)	83, 338, 585
HpySE526I	ACGT	1 cut(s)	450
Hsp92II	CATG	6 cut(s)	21, 405, 779, 818, 864, 1114
HspAI	GCGC	1 cut(s)	1114
Kzo9I	GATC	4 cut(s)	328, 825, 922, 1060
LguI	GCTCTTC	2 cut(s)	814, 1101
LmnI	GCTCC	1 cut(s)	490
Lsp1109I	GCAGC	2 cut(s)	287, 348
MaeI	CTAG	1 cut(s)	1044
MaeII	ACGT	1 cut(s)	450
MaeIII	GTNAC	4 cut(s)	106, 518, 667, 1134
MalI	GATC	4 cut(s)	330, 827, 924, 1062
MboI	GATC	4 cut(s)	328, 825, 922, 1060
MboII	GAAGA	4 cut(s)	20, 801, 1088, 1091
MfeI	CAATTG	1 cut(s)	174
MhlI	GDGCHC	5 cut(s)	196, 529, 763, 856, 1148
MluCI	AATT	9 cut(s)	174, 229, 253, 382, 601, 738, 909, 936, 1025
Mph1103I	ATGCAT	1 cut(s)	325
MseI	TTAA	3 cut(s)	228, 737, 939
MslI	CAYNNNNRTG	3 cut(s)	575, 633, 1141
MspI	CCGG	1 cut(s)	1091
MspR9I	CCNGG	1 cut(s)	498
MunI	CAATTG	1 cut(s)	174
Mva1269I	GAATGC	1 cut(s)	369
MvaI	CCWGG	1 cut(s)	498
MwoI	GCNNNNNNNGC	2 cut(s)	490, 539
NcoI	CCATGG	1 cut(s)	814
NdeI	CATATG	2 cut(s)	73, 325
NdeII	GATC	4 cut(s)	328, 825, 922, 1060
NheI	GCTAGC	1 cut(s)	1043
NlaIII	CATG	6 cut(s)	21, 405, 779, 818, 864, 1114
NlaIV	GGNNCC	3 cut(s)	762, 959, 1163
NmuCI	GTSAC	2 cut(s)	667, 1134
NsiI	ATGCAT	1 cut(s)	325
NspI	RCATGY	2 cut(s)	864, 1114
NspV	TTCGAA	1 cut(s)	1194
OliI	CACNNNNGTG	2 cut(s)	575, 1141
PciI	ACATGT	1 cut(s)	860
PciSI	GCTCTTC	2 cut(s)	814, 1101
PctI	GAATGC	1 cut(s)	369
PfeI	GAWTC	4 cut(s)	68, 125, 638, 769
PkrI	GCNGC	2 cut(s)	302, 363
PpuMI	RGGWCCY	1 cut(s)	958
PscI	ACATGT	1 cut(s)	860
Psp5II	RGGWCCY	1 cut(s)	958
Psp6I	CCWGG	1 cut(s)	496
PspGI	CCWGG	1 cut(s)	496
PspN4I	GGNNCC	3 cut(s)	762, 959, 1163
PspPI	GGNCC	2 cut(s)	958, 1088
PspPPI	RGGWCCY	1 cut(s)	958
PstI	CTGCAG	1 cut(s)	305
RsaI	GTAC	4 cut(s)	284, 336, 731, 846
RsaNI	GTAC	4 cut(s)	283, 335, 730, 845
RseI	CAYNNNNRTG	3 cut(s)	575, 633, 1141
SapI	GCTCTTC	2 cut(s)	814, 1101
SaqAI	TTAA	3 cut(s)	228, 737, 939
SatI	GCNGC	2 cut(s)	301, 362
Sau3AI	GATC	4 cut(s)	328, 825, 922, 1060
Sau96I	GGNCC	2 cut(s)	958, 1088
ScrFI	CCNGG	1 cut(s)	498
SduI	GDGCHC	5 cut(s)	196, 529, 763, 856, 1148
SfcI	CTRYAG	2 cut(s)	111, 301
SfuI	TTCGAA	1 cut(s)	1194
SinI	GGWCC	2 cut(s)	958, 1088
SmiMI	CAYNNNNRTG	3 cut(s)	575, 633, 1141
SmlI	CTYRAG	4 cut(s)	485, 502, 553, 880
SmoI	CTYRAG	4 cut(s)	485, 502, 553, 880
Sse9I	AATT	9 cut(s)	174, 229, 253, 382, 601, 738, 909, 936, 1025
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	1 cut(s)	1044
StyD4I	CCNGG	1 cut(s)	496
StyI	CCWWGG	3 cut(s)	278, 814, 1012
TaaI	ACNGT	4 cut(s)	112, 198, 524, 574
TaiI	ACGT	1 cut(s)	453
TaqI	TCGA	4 cut(s)	36, 1029, 1194, 1201
TasI	AATT	9 cut(s)	174, 229, 253, 382, 601, 738, 909, 936, 1025
TatI	WGTACW	2 cut(s)	334, 729
TfiI	GAWTC	4 cut(s)	68, 125, 638, 769
Tru1I	TTAA	3 cut(s)	228, 737, 939
Tru9I	TTAA	3 cut(s)	228, 737, 939
TscAI	CASTG	4 cut(s)	310, 529, 579, 1054
TseFI	GTSAC	2 cut(s)	667, 1134
TseI	GCWGC	2 cut(s)	300, 361
Tsp45I	GTSAC	2 cut(s)	667, 1134
TspDTI	ATGAA	7 cut(s)	81, 105, 156, 617, 826, 890, 1047
TspGWI	ACGGA	2 cut(s)	169, 818
TspRI	CASTG	4 cut(s)	310, 529, 579, 1054
VneI	GTGCAC	1 cut(s)	525
VpaK11BI	GGWCC	2 cut(s)	958, 1088
XapI	RAATTY	2 cut(s)	601, 1025
XceI	RCATGY	2 cut(s)	864, 1114
XcmI	CCANNNNNNNNNTGG	2 cut(s)	276, 1178
XspI	CTAG	1 cut(s)	1044
Zsp2I	ATGCAT	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.