AT3G61730

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0014124
Physical Location & Seq
Reverse (-)
22848427 .. 22850475
2049 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G61730.1

Sequence Viewer

Length: 1080 bp
ATGAAGACGAGATCTAGTGATGCCGAAGGAGATAGTAGAGGGAAGATGATAGCTCCGGTGGGAGAAGGAAATGGTGGACGGAAGAGAAAATTGGTGCAGAGCAACGAACAGAAGAACGATATTCAGAGAGAAGAAGATGGTAGAGCTAAGAGAAGAATCGTTCAGAGCAGCGACCAGAAGAACGGGAAGATCCTCAGAGGAATTCGTGGCTGTGTATCTCCACGGTGCTCTGCTCAGACTTACCAGTCTCGCTTTTCATGGTATGAGCAAGATATATGGACATACATTTCAAGGTTTTTGGATGGTAAATCACTGGTGAAGCTGGGAGCAACAAACAAATGGTTCTATAAGATCGCAATGGAGGATACTGTTTGGAGGTTTGCCTGCTTGCGTGATCTTCAGGTCCCTGTGCCGTTTCCCGTTTCTTCCACCTGGATTAAGATTTATGCTTCAGCTTTTGATGGGAGTCACTCTTACTTGTTCCGTCAGAAGGAGAAGCATATTGATTGGATGCGGATAGGTGCCTTTGTTCTTGACTCTCGAACTTCACTCCTGACTGAGAGTTTGAGTGGTCGTCTGAAATTCCCAAGGGAAGGAACCATAGAACGGATGTTACAATCCAGTGGTTCATGTCTTATCAACGACATCAAAAGCGGTATTTGGATTGCAGATTTACAGCTTGTACGTTGCCCTGTTTGTGACCTCAGTACCTGTGATGGAACAATGCAAACTCTTGATGCTAGGCACATTGAACTCTTCCTTAGTGAAGGCTACAAAGATGGAAGCTGGGATTACAATCTGATCGGATCTCATAAGTTGCAGAAAAACGCAAGTGCAGCTTGTGGAGCCATATTTGACCTCAAACACCTTAAAGAATCTTCATATTCAGGTATTCTCAACCTCAAGTCTTGGACCGGAGAGTCAAATGATTCCCAACCTAAAGCAGTTATCGCACCCCACGCTGTTGCTGTTCACACAAGACTGCAAGAAAACGAAGGAATCCTTGTGAAGTACCACACAATGAAAGCAGGAACAGACGGTGACATTGTTTCCATCAGAATCTCCCAGCAACTTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

359

Amino Acids

40.45

Weight (kDa)

9.21

Isoelectric Point (pI)

53.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014124)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61730 AT5G36000
fragaria_vesca FvH4_7g16360 FvH4_7g16360
malus_domestica MD01G1080100.v1.1 MD07G1149100.v1.1
prunus_persica Prupe.2G187500_v2.0.a1
pyrus_communis pycom01g10840
rosa_chinensis RchiOBHm_Chr1g0359371
rosa_laevigata RLG00000027875
rosa_multiflora Rmu_co8499881.1_g000001
rosa_rugosa Rorug01G0270600
rosa_samantha Rh1AG284100 Rh1BG250200 Rh1CG268100 Rh1DG279100
rosa_wichuraiana Rw1G025220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 244, 919
AccB1I GGYRCC 1 cut(s) 521
AciI CCGC 2 cut(s) 514, 654
AclWI GGATC 2 cut(s) 184, 814
AcsI RAATTY 2 cut(s) 201, 581
AcuI CTGAAG 2 cut(s) 383, 435
AfaI GTAC 3 cut(s) 684, 709, 1013
AfiI CCNNNNNNNGG 3 cut(s) 490, 593, 606
AgsI TTSAA 2 cut(s) 291, 752
AjnI CCWGG 1 cut(s) 431
AjuI GAANNNNNNNTTGG 2 cut(s) 74, 106
AluBI AGCT 7 cut(s) 53, 146, 322, 455, 679, 786, 839
AluI AGCT 7 cut(s) 53, 146, 322, 455, 679, 786, 839
Alw21I GWGCWC 1 cut(s) 230
Alw26I GTCTC 1 cut(s) 252
AlwI GGATC 2 cut(s) 184, 814
AlwNI CAGNNNCTG 1 cut(s) 711
ApeKI GCWGC 2 cut(s) 168, 836
ApoI RAATTY 2 cut(s) 201, 581
ArsI GACNNNNNNTTYG 2 cut(s) 547, 579
AspS9I GGNCC 2 cut(s) 403, 912
AsuHPI GGTGA 2 cut(s) 328, 1052
AvaII GGWCC 2 cut(s) 403, 912
BaeI ACNNNNGTAYC 2 cut(s) 691, 724
BanI GGYRCC 1 cut(s) 521
BbsI GAAGAC 1 cut(s) 11
Bbv12I GWGCWC 1 cut(s) 230
BbvI GCAGC 2 cut(s) 180, 848
BccI CCATC 6 cut(s) 131, 296, 455, 710, 773, 1061
BceAI ACGGC 1 cut(s) 397
BciT130I CCWGG 1 cut(s) 433
BciVI GTATCC 1 cut(s) 358
BcoDI GTCTC 1 cut(s) 252
BfaI CTAG 2 cut(s) 15, 741
BfuI GTATCC 1 cut(s) 358
BglII AGATCT 1 cut(s) 11
BisI GCNGC 2 cut(s) 169, 837
BlsI GCNGC 2 cut(s) 170, 838
Bme1390I CCNGG 1 cut(s) 433
Bme18I GGWCC 2 cut(s) 403, 912
BmgT120I GGNCC 2 cut(s) 403, 912
BmiI GGNNCC 4 cut(s) 405, 523, 598, 847
BmrFI CCNGG 1 cut(s) 433
BmsI GCATC 3 cut(s) 10, 501, 727
BpiI GAAGAC 1 cut(s) 11
BpuEI CTTGAG 1 cut(s) 887
BsaBI GATNNNNATC 1 cut(s) 795
BsaJI CCNNGG 2 cut(s) 221, 587
BsaWI WCCGGW 2 cut(s) 55, 914
Bsc4I CCNNNNNNNGG 3 cut(s) 490, 593, 606
Bse1I ACTGG 3 cut(s) 244, 318, 621
Bse3DI GCAATG 1 cut(s) 363
Bse8I GATNNNNATC 1 cut(s) 795
BseBI CCWGG 1 cut(s) 433
BseDI CCNNGG 2 cut(s) 221, 587
BseGI GGATG 3 cut(s) 307, 516, 615
BseJI GATNNNNATC 1 cut(s) 795
BseLI CCNNNNNNNGG 3 cut(s) 490, 593, 606
BseMI GCAATG 1 cut(s) 363
BseMII CTCAG 4 cut(s) 208, 248, 549, 718
BseNI ACTGG 3 cut(s) 244, 318, 621
BseXI GCAGC 2 cut(s) 180, 848
BseYI CCCAGC 3 cut(s) 322, 786, 1065
BsgI GTGCAG 2 cut(s) 116, 855
BshNI GGYRCC 1 cut(s) 521
BsiHKAI GWGCWC 1 cut(s) 230
BsiSI CCGG 2 cut(s) 56, 915
BslFI GGGAC 1 cut(s) 389
BslI CCNNNNNNNGG 3 cut(s) 490, 593, 606
BsmAI GTCTC 1 cut(s) 252
BsmFI GGGAC 1 cut(s) 389
Bsp1286I GDGCHC 1 cut(s) 230
Bsp143I GATC 6 cut(s) 11, 189, 351, 394, 801, 806
BspACI CCGC 2 cut(s) 514, 654
BspCNI CTCAG 4 cut(s) 207, 247, 550, 717
BspLI GGNNCC 4 cut(s) 405, 523, 598, 847
BspPI GGATC 2 cut(s) 184, 814
BspT107I GGYRCC 1 cut(s) 521
BsrDI GCAATG 1 cut(s) 363
BsrI ACTGG 3 cut(s) 244, 318, 621
BssECI CCNNGG 2 cut(s) 221, 587
BssMI GATC 6 cut(s) 11, 189, 351, 394, 801, 806
BssT1I CCWWGG 1 cut(s) 587
Bst2UI CCWGG 1 cut(s) 433
Bst4CI ACNGT 3 cut(s) 225, 370, 1040
Bst6I CTCTTC 2 cut(s) 77, 761
BstC8I GCNNGC 2 cut(s) 385, 389
BstDEI CTNAG 6 cut(s) 147, 194, 234, 558, 704, 761
BstDSI CCRYGG 1 cut(s) 221
BstF5I GGATG 3 cut(s) 307, 516, 615
BstKTI GATC 6 cut(s) 14, 192, 354, 397, 804, 809
BstMAI GTCTC 1 cut(s) 252
BstMBI GATC 6 cut(s) 11, 189, 351, 394, 801, 806
BstMWI GCNNNNNNNGC 4 cut(s) 836, 845, 950, 959
BstNI CCWGG 1 cut(s) 433
BstSCI CCNGG 1 cut(s) 431
BstV1I GCAGC 2 cut(s) 180, 848
BstV2I GAAGAC 1 cut(s) 11
BstX2I RGATCY 3 cut(s) 11, 189, 806
BstYI RGATCY 3 cut(s) 11, 189, 806
BsuI GTATCC 1 cut(s) 358
BtgI CCRYGG 1 cut(s) 221
BtsCI GGATG 3 cut(s) 307, 516, 615
BtsIMutI CAGTG 2 cut(s) 311, 628
Cac8I GCNNGC 2 cut(s) 385, 389
CaiI CAGNNNCTG 1 cut(s) 711
Cfr13I GGNCC 2 cut(s) 403, 912
Csp6I GTAC 3 cut(s) 683, 708, 1012
CviAII CATG 2 cut(s) 258, 630
CviQI GTAC 3 cut(s) 683, 708, 1012
DdeI CTNAG 6 cut(s) 147, 194, 234, 558, 704, 761
DpnI GATC 6 cut(s) 13, 191, 353, 396, 803, 808
DpnII GATC 6 cut(s) 11, 189, 351, 394, 801, 806
DrdI GACNNNNNNGTC 2 cut(s) 244, 919
DseDI GACNNNNNNGTC 2 cut(s) 244, 919
Eam1104I CTCTTC 2 cut(s) 77, 761
EarI CTCTTC 2 cut(s) 77, 761
Eco130I CCWWGG 1 cut(s) 587
Eco47I GGWCC 2 cut(s) 403, 912
Eco57I CTGAAG 2 cut(s) 383, 435
EcoO109I RGGNCCY 1 cut(s) 403
EcoRI GAATTC 1 cut(s) 201
EcoRII CCWGG 1 cut(s) 431
EcoT14I CCWWGG 1 cut(s) 587
ErhI CCWWGG 1 cut(s) 587
FaeI CATG 2 cut(s) 261, 633
FalI AAGNNNNNCTT 4 cut(s) 823, 855, 987, 1019
FaqI GGGAC 1 cut(s) 389
FatI CATG 2 cut(s) 257, 629
Fnu4HI GCNGC 2 cut(s) 169, 837
FokI GGATG 3 cut(s) 314, 523, 622
Fsp4HI GCNGC 2 cut(s) 169, 837
FspBI CTAG 2 cut(s) 15, 741
GluI GCNGC 2 cut(s) 169, 837
GsaI CCCAGC 3 cut(s) 326, 790, 1069
HapII CCGG 2 cut(s) 56, 915
Hin1II CATG 2 cut(s) 261, 633
HinfI GANTC 8 cut(s) 156, 466, 536, 875, 920, 929, 999, 1059
HpaII CCGG 2 cut(s) 56, 915
HphI GGTGA 2 cut(s) 328, 1052
Hpy166II GTNNAC 2 cut(s) 77, 973
Hpy188III TCNNGA 4 cut(s) 533, 540, 553, 734
Hpy8I GTNNAC 2 cut(s) 77, 973
HpyAV CCTTC 6 cut(s) 20, 59, 484, 587, 761, 989
HpyCH4III ACNGT 3 cut(s) 225, 370, 1040
HpyCH4IV ACGT 1 cut(s) 685
HpyCH4V TGCA 6 cut(s) 97, 668, 727, 820, 836, 985
HpyF10VI GCNNNNNNNGC 4 cut(s) 836, 845, 950, 959
HpyF3I CTNAG 6 cut(s) 147, 194, 234, 558, 704, 761
HpySE526I ACGT 1 cut(s) 685
Hsp92II CATG 2 cut(s) 261, 633
Kzo9I GATC 6 cut(s) 11, 189, 351, 394, 801, 806
LmnI GCTCC 3 cut(s) 58, 326, 845
Lsp1109I GCAGC 2 cut(s) 180, 848
LweI GCATC 3 cut(s) 10, 501, 727
MaeI CTAG 2 cut(s) 15, 741
MaeII ACGT 1 cut(s) 685
MaeIII GTNAC 4 cut(s) 467, 612, 698, 1040
MalI GATC 6 cut(s) 13, 191, 353, 396, 803, 808
MboI GATC 6 cut(s) 11, 189, 351, 394, 801, 806
MflI RGATCY 3 cut(s) 11, 189, 806
MhlI GDGCHC 1 cut(s) 230
MluCI AATT 3 cut(s) 89, 201, 581
MlyI GAGTC 3 cut(s) 475, 530, 929
MnlI CCTC 8 cut(s) 32, 191, 203, 355, 369, 713, 869, 911
MseI TTAA 2 cut(s) 438, 870
MspI CCGG 2 cut(s) 56, 915
MspR9I CCNGG 1 cut(s) 433
MvaI CCWGG 1 cut(s) 433
MwoI GCNNNNNNNGC 4 cut(s) 836, 845, 950, 959
NdeII GATC 6 cut(s) 11, 189, 351, 394, 801, 806
NlaIII CATG 2 cut(s) 261, 633
NlaIV GGNNCC 4 cut(s) 405, 523, 598, 847
NmuCI GTSAC 3 cut(s) 467, 698, 1040
PfeI GAWTC 5 cut(s) 156, 875, 929, 999, 1059
PkrI GCNGC 2 cut(s) 170, 838
PleI GAGTC 3 cut(s) 474, 530, 928
PpsI GAGTC 3 cut(s) 474, 530, 928
PpuMI RGGWCCY 1 cut(s) 403
Psp5II RGGWCCY 1 cut(s) 403
Psp6I CCWGG 1 cut(s) 431
PspFI CCCAGC 3 cut(s) 322, 786, 1065
PspGI CCWGG 1 cut(s) 431
PspN4I GGNNCC 4 cut(s) 405, 523, 598, 847
PspPI GGNCC 2 cut(s) 403, 912
PspPPI RGGWCCY 1 cut(s) 403
PsrI GAACNNNNNNTAC 2 cut(s) 597, 629
PstNI CAGNNNCTG 1 cut(s) 711
PsuI RGATCY 3 cut(s) 11, 189, 806
RsaI GTAC 3 cut(s) 684, 709, 1013
RsaNI GTAC 3 cut(s) 683, 708, 1012
SaqAI TTAA 2 cut(s) 438, 870
SatI GCNGC 2 cut(s) 169, 837
Sau3AI GATC 6 cut(s) 11, 189, 351, 394, 801, 806
Sau96I GGNCC 2 cut(s) 403, 912
SchI GAGTC 3 cut(s) 475, 530, 929
ScrFI CCNGG 1 cut(s) 433
SduI GDGCHC 1 cut(s) 230
SfaNI GCATC 3 cut(s) 10, 501, 727
SinI GGWCC 2 cut(s) 403, 912
SmlI CTYRAG 1 cut(s) 902
SmoI CTYRAG 1 cut(s) 902
Sse9I AATT 3 cut(s) 89, 201, 581
SsiI CCGC 2 cut(s) 514, 654
SspMI CTAG 2 cut(s) 15, 741
StyD4I CCNGG 1 cut(s) 431
StyI CCWWGG 1 cut(s) 587
TaaI ACNGT 3 cut(s) 225, 370, 1040
TaiI ACGT 1 cut(s) 688
TaqI TCGA 1 cut(s) 541
TasI AATT 3 cut(s) 89, 201, 581
TfiI GAWTC 5 cut(s) 156, 875, 929, 999, 1059
Tru1I TTAA 2 cut(s) 438, 870
Tru9I TTAA 2 cut(s) 438, 870
TscAI CASTG 2 cut(s) 318, 628
TseFI GTSAC 3 cut(s) 467, 698, 1040
TseI GCWGC 2 cut(s) 168, 836
Tsp45I GTSAC 3 cut(s) 467, 698, 1040
TspDTI ATGAA 5 cut(s) 17, 246, 618, 870, 1037
TspGWI ACGGA 3 cut(s) 94, 473, 622
TspRI CASTG 2 cut(s) 318, 628
VpaK11BI GGWCC 2 cut(s) 403, 912
XapI RAATTY 2 cut(s) 201, 581
XspI CTAG 2 cut(s) 15, 741
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.